Pfam ID Description Accession Interpro ID GO ID
WD40 WD domain, G-beta repeat PF00400 IPR019781



WD40 forms interactions with

Pfam ID Description Accession Interpro ID GO ID Notes Source
Actin Actin PF00022 IPR004000
GO:0005515
 PDB 3DID ME GPE RDFF INSITE
PH PH domain PF00169 IPR001849
PDB IPFAM 3DID FUSION DIPD DOMAINGA
WD40 WD domain, G-beta repeat PF00400 IPR019781
PDB IPFAM 3DID ME PVALUE PE GPE RDFF DOMAINGA
G-alpha G-protein alpha subunit PF00503 IPR001019
GO:0004871
GO:0007186
GO:0019001
 PDB IPFAM 3DID PVALUE INSITE DOMAINGA
DEP Domain found in Dishevelled, Egl-10, and Pleckstrin PF00610 IPR000591
GO:0023034
 PDB 3DID RDFF
RGS Regulator of G protein signaling domain PF00615 IPR000342
GO:0004871
 PDB 3DID
G-gamma GGL domain PF00631 IPR015898
GO:0004871
GO:0005834
GO:0007186
 PDB IPFAM 3DID PE INSITE DOMAINGA
Lipase_GDSL GDSL-like Lipase/Acylhydrolase PF00657 IPR001087
GO:0006629
GO:0016788
 PDB IPFAM 3DID
Phosducin Phosducin PF02114
PDB IPFAM 3DID
Methyltransf_4 Putative methyltransferase PF02390 IPR003358
GO:0006400
GO:0008176
 PDB 3DID
CPSF_A CPSF A subunit region PF03178 IPR004871
GO:0003676
GO:0005634
 PDB 3DID
P16-Arc ARP2/3 complex 16 kDa subunit (p16-Arc) PF04699 IPR006789
GO:0005856
GO:0030833
 PDB 3DID
ARPC4 ARP2/3 complex 20 kDa subunit (ARPC4) PF05856 IPR008384
GO:0005856
GO:0030041
 PDB 3DID
Nucleopor_Nup85 Nup85 Nucleoporin PF07575 IPR011502
PDB 3DID DPEA PE INSITE
Mad3_BUB1_II Mad3/BUB1 homology region 2 PF08171 IPR012572
GO:0000075
GO:0005634
 PDB 3DID
eIF2A Eukaryotic translation initiation factor eIF2A PF08662 IPR013979
PDB 3DID PVALUE
DUF1899 Domain of unknown function (DUF1899) PF08953 IPR015048
PDB IPFAM 3DID
DUF1900 Domain of unknown function (DUF1900) PF08954 IPR015049
PDB IPFAM 3DID
HSP70 Hsp70 protein PF00012 IPR013126
HCP ME RCDP GPE RDFF
SH3_1 SH3 domain PF00018 IPR001452
HCP ME RDFF DOMAINGA
Homeobox Homeobox domain PF00046 IPR001356
GO:0003700
GO:0006355
GO:0043565
 HCP GPE RDFF KGIDDI DOMAINGA
Pkinase Protein kinase domain PF00069 IPR017442
GO:0004672
GO:0005524
GO:0006468
 HCP ME PVALUE FUSION PE GPE DIPD RDFF DOMAINGA
RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) PF00076 IPR000504
GO:0003676
 HCP ME PE GPE RDFF DOMAINGA
zf-C2H2 Zinc finger, C2H2 type PF00096 IPR007087
GO:0005622
GO:0008270
 HCP ME GPE RDFF DOMAINGA
zf-C3HC4 Zinc finger, C3HC4 type (RING finger) PF00097 IPR018957
HCP ME FUSION INSITE
Cpn60_TCP1 TCP-1/cpn60 chaperonin family PF00118 IPR002423
GO:0005515
GO:0005524
GO:0044267
 HCP DPEA PE GPE DIPD RDFF
Histone Core histone H2A/H2B/H3/H4 PF00125 IPR007125
GO:0003677
 HCP ME GPE RDFF INSITE
Metallophos Calcineurin-like phosphoesterase PF00149 IPR004843
GO:0016787
 HCP GPE RDFF DOMAINGA
PGK Phosphoglycerate kinase PF00162 IPR001576
GO:0004618
GO:0006096
 HCP DPEA PE DIPD RDFF INSITE
ATP-synt ATP synthase PF00231 IPR000131
GO:0015986
GO:0045261
GO:0046933
GO:0046961
 HCP PE DIPD RDFF INSITE
DEAD DEAD/DEAH box helicase PF00270 IPR011545
GO:0003676
GO:0005524
GO:0008026
 HCP RCDP RDFF DOMAINGA
Ribosomal_S2 Ribosomal protein S2 PF00318 IPR001865
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 HCP PE RDFF DOMAINGA
2-Hacid_dh D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain PF00389 IPR006139
GO:0008152
GO:0016616
GO:0051287
 HCP RCDP GPE RDFF KGIDDI
Bromodomain Bromodomain PF00439 IPR001487
HCP ME PVALUE FUSION RDFF KGIDDI DOMAINGA
HSF_DNA-bind HSF-type DNA-binding PF00447 IPR000232
GO:0003700
GO:0005634
GO:0006355
GO:0043565
 HCP PE RDFF DOMAINGA
TPR_1 Tetratricopeptide repeat PF00515 IPR001440
HCP ME RDFF DOMAINGA
HECT HECT-domain (ubiquitin-transferase) PF00632 IPR000569
GO:0005622
GO:0006464
GO:0016881
 HCP ME PE
F-box F-box domain PF00646 IPR001810
HCP ME PVALUE FUSION RDFF
Hist_deacetyl Histone deacetylase domain PF00850 IPR000286
HCP ME RDFF DOMAINGA
Ribosomal_S8e Ribosomal protein S8e PF01201 IPR022309
HCP RCDP INSITE DOMAINGA
Clat_adaptor_s Clathrin adaptor complex small chain PF01217
HCP DIPD RDFF DOMAINGA
FYVE FYVE zinc finger PF01363 IPR000306
HCP ME FUSION PE RDFF
LSM LSM domain PF01423 IPR001163
HCP ME PE GPE RDFF INSITE DOMAINGA
Adaptin_N Adaptin N terminal region PF01602 IPR002553
GO:0005515
GO:0006886
GO:0016192
GO:0030117
 HCP DIPD RDFF DOMAINGA
PC_rep Proteasome/cyclosome repeat PF01851 IPR002015
HCP PE RDFF DOMAINGA
eIF-6 eIF-6 family PF01912 IPR002769
GO:0042256
GO:0043022
 HCP ME DPEA PE RDFF
GST_N Glutathione S-transferase, N-terminal domain PF02798 IPR004045
HCP GPE RDFF DOMAINGA
HEAT HEAT repeat PF02985 IPR000357
HCP ME PE DOMAINGA
MH2 MH2 domain PF03166 IPR001132
GO:0005622
GO:0006355
 HCP ME
Nup84_Nup100 Nuclear pore protein 84 / 107 PF04121 IPR007252
GO:0005643
GO:0006810
 HCP DPEA PE INSITE DOMAINGA
AAA ATPase family associated with various cellular activities (AAA) PF00004 IPR003959
GO:0005524
 MCP GPE RDFF
GTP_EFTU Elongation factor Tu GTP binding domain PF00009 IPR000795
GO:0003924
GO:0005525
 MCP PE RDFF
KH_1 KH domain PF00013 IPR018111
GO:0003723
 MCP GPE RDFF
Myosin_head Myosin head (motor domain) PF00063 IPR001609
GO:0003774
GO:0005524
GO:0016459
 MCP GPE RDFF
adh_short short chain dehydrogenase PF00106 IPR002198
GO:0008152
GO:0016491
 MCP RDFF DOMAINGA
Cyclin_N Cyclin, N-terminal domain PF00134 IPR006671
MCP RDFF DOMAINGA
Ribosomal_S4 Ribosomal protein S4/S9 N-terminal domain PF00163 IPR001912
GO:0005622
GO:0019843
 MCP RDFF DOMAINGA
Zn_clus Fungal Zn(2)-Cys(6) binuclear cluster domain PF00172 IPR001138
GO:0003700
GO:0005634
GO:0006355
GO:0008270
 MCP PVALUE DOMAINGA
SNF2_N SNF2 family N-terminal domain PF00176 IPR000330
GO:0003677
GO:0005524
 MCP RDFF DOMAINGA
UQ_con Ubiquitin-conjugating enzyme PF00179 IPR000608
GO:0019787
GO:0043687
GO:0051246
 MCP PVALUE DOMAINGA
Iso_dh Isocitrate/isopropylmalate dehydrogenase PF00180 IPR001804
GO:0000287
GO:0016616
GO:0051287
GO:0055114
 MCP RDFF DOMAINGA
DnaJ DnaJ domain PF00226 IPR001623
GO:0031072
 MCP RDFF DOMAINGA
ubiquitin Ubiquitin family PF00240 IPR000626
MCP RDFF DOMAINGA
Flavodoxin_1 Flavodoxin PF00258 IPR008254
GO:0010181
GO:0016491
 MCP RDFF DOMAINGA
Ribonuc_red_sm Ribonucleotide reductase, small chain PF00268 IPR000358
GO:0004748
GO:0009186
GO:0055114
 MCP DIPD RDFF
Helicase_C Helicase conserved C-terminal domain PF00271 IPR001650
GO:0003676
GO:0004386
GO:0005524
 MCP RDFF DOMAINGA
Ribosomal_L3 Ribosomal protein L3 PF00297 IPR000597
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 MCP PE RDFF
ATP-synt_ab_C ATP synthase alpha/beta chain, C terminal domain PF00306 IPR000793
GO:0015986
GO:0016820
GO:0033178
 MCP GPE RDFF
Aconitase Aconitase family (aconitate hydratase) PF00330 IPR001030
GO:0008152
 MCP RDFF DOMAINGA
6PGD 6-phosphogluconate dehydrogenase, C-terminal domain PF00393 IPR006114
GO:0004616
GO:0006098
GO:0050661
GO:0055114
 MCP GPE RDFF
PGM_PMM_IV Phosphoglucomutase/phosphomannomutase, C-terminal domain PF00408 IPR005843
GO:0005975
GO:0016868
 MCP PVALUE RDFF
Ribosomal_60s 60s Acidic ribosomal protein PF00428 IPR001813
GO:0003735
GO:0005622
GO:0005840
GO:0006414
 MCP RDFF DOMAINGA
HMG_box HMG (high mobility group) box PF00505 IPR000910
GO:0003677
GO:0005634
 MCP FUSION INSITE
RNA_pol_Rpb2_6 RNA polymerase Rpb2, domain 6 PF00562 IPR007120
GO:0003677
GO:0003899
GO:0006350
 MCP RDFF DOMAINGA
S1 S1 RNA binding domain PF00575 IPR003029
GO:0003723
 MCP RDFF DOMAINGA
tRNA-synt_2b tRNA synthetase class II core domain (G, H, P, S and T) PF00587 IPR002314
GO:0000166
GO:0004812
GO:0005524
GO:0005737
GO:0006412
GO:0006418
 MCP RDFF DOMAINGA
IQ IQ calmodulin-binding motif PF00612 IPR000048
MCP RDFF DOMAINGA
SPRY SPRY domain PF00622 IPR003877
MCP PE RDFF
PHD PHD-finger PF00628 IPR019787
MCP RDFF DOMAINGA
EF1G Elongation factor 1 gamma, conserved domain PF00647 IPR001662
GO:0003746
GO:0005853
GO:0006414
 MCP GPE RDFF
Hydrolase haloacid dehalogenase-like hydrolase PF00702 IPR005834
GO:0003824
GO:0008152
 MCP RDFF DOMAINGA
SET SET domain PF00856 IPR001214
MCP RDFF DOMAINGA
Cullin Cullin family PF00888 IPR001373
GO:0006511
GO:0031461
GO:0031625
 MCP PVALUE DOMAINGA
Adap_comp_sub Adaptor complexes medium subunit family PF00928 IPR008968
GO:0005515
GO:0006886
GO:0016192
GO:0030131
 MCP PE RDFF
EMP24_GP25L emp24/gp25L/p24 family/GOLD PF01105 IPR000348
GO:0006810
GO:0016021
 MCP DPEA PE RDFF
Nol1_Nop2_Fmu NOL1/NOP2/sun family PF01189 IPR001678
MCP RDFF DOMAINGA
CAP_N Adenylate cyclase associated (CAP) N terminal PF01213 IPR013992
GO:0003779
GO:0007010
 MCP PE RDFF
CK_II_beta Casein kinase II regulatory subunit PF01214 IPR000704
GO:0005956
GO:0019887
 MCP PE RDFF
COX5B Cytochrome c oxidase subunit Vb PF01215 IPR002124
GO:0004129
GO:0005740
 MCP PE RDFF
SUI1 Translation initiation factor SUI1 PF01253 IPR001950
GO:0003743
GO:0006413
 MCP PE RDFF
Fibrillarin Fibrillarin PF01269 IPR000692
GO:0003723
GO:0006364
GO:0008033
GO:0008168
 MCP PE RDFF INSITE
Ribosomal_S26e Ribosomal protein S26e PF01283 IPR000892
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 MCP PE DOMAINGA
Kelch_1 Kelch motif PF01344 IPR006652
MCP PE RDFF
Mov34 Mov34/MPN/PAD-1 family PF01398 IPR000555
MCP PE RDFF
PCI PCI domain PF01399 IPR000717
MCP GPE RDFF
ArfGap Putative GTPase activating protein for Arf PF01412 IPR001164
GO:0008060
GO:0008270
GO:0032312
 MCP PVALUE PE RDFF
Porin_3 Eukaryotic porin PF01459 IPR001925
GO:0005741
GO:0006820
GO:0008308
GO:0055085
 MCP RDFF DOMAINGA
Skp1 Skp1 family, dimerisation domain PF01466 IPR016072
GO:0006511
 MCP PVALUE GPE
CTP_transf_2 Cytidylyltransferase PF01467 IPR004820
GO:0009058
GO:0016779
 MCP PE RDFF
PUA PUA domain PF01472 IPR002478
GO:0003723
 MCP PE RDFF
B56 Protein phosphatase 2A regulatory B subunit (B56 family) PF01603 IPR002554
GO:0000159
GO:0007165
GO:0008601
 MCP RDFF INSITE
NAC NAC domain PF01849 IPR002715
MCP PE RDFF
ERCC4 ERCC4 domain PF02732 IPR006166
GO:0003677
GO:0004518
GO:0005515
GO:0006259
 MCP PE RDFF
2-Hacid_dh_C D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PF02826 IPR006140
GO:0016616
GO:0048037
 MCP RDFF KGIDDI
ATP-synt_ab_N ATP synthase alpha/beta family, beta-barrel domain PF02874 IPR004100
GO:0015992
GO:0016469
GO:0046034
GO:0046933
GO:0046961
 MCP GPE RDFF
PGM_PMM_III Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PF02880 IPR005846
GO:0005975
GO:0016868
 MCP GPE RDFF
TAF TATA box binding protein associated factor (TAF) PF02969 IPR004823
GO:0005634
GO:0006352
GO:0016986
 MCP PVALUE RDFF
HEAT_PBS PBS lyase HEAT-like repeat PF03130 IPR004155
MCP PE DOMAINGA
Skp1_POZ Skp1 family, tetramerisation domain PF03931 IPR016073
GO:0006511
 MCP PVALUE DOMAINGA
Coatomer_WDAD Coatomer WD associated region PF04053 IPR006692
GO:0005198
GO:0005515
GO:0006886
GO:0016192
GO:0030117
 MCP GPE DIPD INSITE
Nucleoporin2 Nucleoporin autopeptidase PF04096 IPR007230
GO:0005643
GO:0006810
 MCP PE DOMAINGA
Brix Brix domain PF04427 IPR007109
MCP PE GPE
RNA_pol_Rpb2_5 RNA polymerase Rpb2, domain 5 PF04567 IPR007647
GO:0003677
GO:0003899
GO:0006350
 MCP GPE DOMAINGA
Cps15 Chromatin remodelling complex component cps15 PF05205
MCP DPEA PE INSITE
Bystin Bystin PF05291 IPR007955
MCP PE DOMAINGA
SNARE SNARE domain PF05739 IPR000727
MCP INSITE DOMAINGA
ABC_tran ABC transporter PF00005 IPR003439
GO:0005524
GO:0016887
 LCP DOMAINGA
ATP-synt_ab ATP synthase alpha/beta family, nucleotide-binding domain PF00006 IPR000194
GO:0005524
 LCP RDFF
HLH Helix-loop-helix DNA-binding domain PF00010 IPR001092
GO:0030528
GO:0045449
 LCP KGIDDI
fn3 Fibronectin type III domain PF00041 IPR003961
LCP INSITE
GST_C Glutathione S-transferase, C-terminal domain PF00043 IPR004046
LCP RDFF
Ras Ras family PF00071 IPR013753
LCP RDFF
Peptidase_S8 Subtilase family PF00082 IPR000209
GO:0004252
GO:0006508
 LCP RDFF
Sugar_tr Sugar (and other) transporter PF00083 IPR005828
GO:0005215
GO:0006810
GO:0016021
GO:0055085
 LCP RDFF
zf-CCHC Zinc knuckle PF00098 IPR001878
GO:0003676
GO:0008270
 LCP INSITE
Hormone_recep Ligand-binding domain of nuclear hormone receptor PF00104 IPR000536
GO:0003700
GO:0003707
GO:0005634
GO:0006355
 LCP KGIDDI
zf-C4 Zinc finger, C4 type (two domains) PF00105 IPR001628
GO:0003700
GO:0005634
GO:0006355
GO:0008270
GO:0043565
 LCP KGIDDI
Thiolase_N Thiolase, N-terminal domain PF00108 IPR020616
GO:0008152
GO:0016747
 LCP GPE
GATase Glutamine amidotransferase class-I PF00117 IPR000991
GO:0003824
 LCP DOMAINGA
Alpha-amylase Alpha amylase, catalytic domain PF00128 IPR006047
GO:0003824
GO:0005975
GO:0043169
 LCP DOMAINGA
Hexapep Bacterial transferase hexapeptide (three repeats) PF00132 IPR001451
LCP DOMAINGA
Mito_carr Mitochondrial carrier protein PF00153 IPR018108
LCP DOMAINGA
Pribosyltran Phosphoribosyl transferase domain PF00156 IPR000836
GO:0009116
 LCP DOMAINGA
Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD PF00160 IPR002130
GO:0003755
GO:0006457
 LCP RDFF
C2 C2 domain PF00168 IPR000008
LCP DOMAINGA
bZIP_1 bZIP transcription factor PF00170 IPR011616
GO:0003700
GO:0006355
GO:0043565
GO:0046983
 LCP RDFF
Ribosomal_S7 Ribosomal protein S7p/S5e PF00177 IPR000235
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DOMAINGA
UDPGT UDP-glucoronosyl and UDP-glucosyl transferase PF00201 IPR002213
GO:0008152
GO:0016758
 LCP PE
Aminotran_3 Aminotransferase class-III PF00202 IPR005814
GO:0008483
GO:0030170
 LCP PE
Lyase_1 Lyase PF00206 IPR022761
LCP RDFF
Cofilin_ADF Cofilin/tropomyosin-type actin-binding protein PF00241 IPR002108
GO:0003779
GO:0005622
 LCP RDFF
Alk_phosphatase Alkaline phosphatase PF00245 IPR001952
GO:0008152
GO:0016791
 LCP DOMAINGA
Myb_DNA-binding Myb-like DNA-binding domain PF00249 IPR014778
LCP RDFF
FKBP_C FKBP-type peptidyl-prolyl cis-trans isomerase PF00254 IPR001179
GO:0006457
 LCP RDFF
Citrate_synt Citrate synthase PF00285 IPR002020
GO:0044262
GO:0046912
 LCP PE
PALP Pyridoxal-phosphate dependent enzyme PF00291 IPR001926
GO:0003824
GO:0008152
GO:0030170
 LCP DOMAINGA
NUDIX NUDIX domain PF00293 IPR000086
GO:0016787
 LCP RDFF
PGAM Phosphoglycerate mutase family PF00300 IPR013078
LCP RDFF
GATase_2 Glutamine amidotransferases class-II PF00310 IPR000583
GO:0008152
 LCP RDFF
Ribosomal_S15 Ribosomal protein S15 PF00312 IPR000589
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DOMAINGA
AA_permease Amino acid permease PF00324 IPR004841
GO:0006810
GO:0016020
GO:0055085
 LCP RDFF
Ribosomal_S10 Ribosomal protein S10p/S20e PF00338 IPR001848
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DOMAINGA
Ribosomal_L6 Ribosomal protein L6 PF00347 IPR020040
GO:0003735
GO:0005840
GO:0006412
GO:0019843
 LCP PE
TBP Transcription factor TFIID (or TATA-binding protein, TBP) PF00352 IPR000814
GO:0003677
GO:0003702
GO:0006355
GO:0006367
 LCP RDFF
PFK Phosphofructokinase PF00365 IPR000023
GO:0003872
GO:0005945
GO:0006096
 LCP RDFF
Ribosomal_S17 Ribosomal protein S17 PF00366 IPR000266
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DOMAINGA
Ribosomal_S9 Ribosomal protein S9/S16 PF00380 IPR000754
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DOMAINGA
TFIIB Transcription factor TFIIB repeat PF00382 IPR013150
GO:0003743
GO:0005515
GO:0006413
 LCP RDFF
WW WW domain PF00397 IPR001202
GO:0005515
 LCP RDFF
PIR Yeast PIR protein repeat PF00399 IPR000420
LCP DOMAINGA
Ribosomal_S8 Ribosomal protein S8 PF00410 IPR000630
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DOMAINGA
Ribosomal_S11 Ribosomal protein S11 PF00411 IPR001971
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DOMAINGA
RCC1 Regulator of chromosome condensation (RCC1) PF00415 IPR000408
LCP DOMAINGA
Ribosomal_S13 Ribosomal protein S13/S18 PF00416 IPR001892
GO:0003723
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DOMAINGA
Pkinase_C Protein kinase C terminal domain PF00433 IPR017892
GO:0004674
GO:0005524
GO:0006468
 LCP RDFF
UCH Ubiquitin carboxyl-terminal hydrolase PF00443 IPR001394
GO:0004221
GO:0006511
 LCP RDFF
SRP54 SRP54-type protein, GTPase domain PF00448 IPR000897
GO:0005525
GO:0006614
 LCP RDFF
PI3_PI4_kinase Phosphatidylinositol 3- and 4-kinase PF00454 IPR000403
GO:0016773
 LCP RDFF
FHA FHA domain PF00498 IPR000253
LCP RDFF
Arm Armadillo/beta-catenin-like repeat PF00514 IPR000225
LCP RDFF
BRCT BRCA1 C Terminus (BRCT) domain PF00533 IPR001357
GO:0005622
 LCP RDFF
Glycos_transf_1 Glycosyl transferases group 1 PF00534 IPR001296
GO:0009058
 LCP RDFF
SAM_1 SAM domain (Sterile alpha motif) PF00536 IPR021129
LCP KGIDDI
Peptidase_M24 metallopeptidase family M24 PF00557 IPR000994
GO:0009987
 LCP DOMAINGA
LRR_1 Leucine Rich Repeat PF00560 IPR001611
GO:0005515
 LCP DOMAINGA
Abhydrolase_1 alpha/beta hydrolase fold PF00561 IPR000073
LCP DOMAINGA
WH1 WH1 domain PF00568 IPR000697
LCP RDFF
CBS CBS domain pair PF00571 IPR000644
LCP DOMAINGA
AhpC-TSA AhpC/TSA family PF00578 IPR000866
GO:0016209
GO:0016491
 LCP DOMAINGA
Acetyltransf_1 Acetyltransferase (GNAT) family PF00583 IPR022610
LCP RDFF
SpoU_methylase SpoU rRNA Methylase family PF00588 IPR001537
GO:0003723
GO:0006396
GO:0008173
 LCP RDFF
CARD Caspase recruitment domain PF00619 IPR001315
GO:0005515
GO:0005622
GO:0042981
 LCP FUSION
RhoGAP RhoGAP domain PF00620 IPR000198
GO:0005622
GO:0007165
 LCP DOMAINGA
RhoGEF RhoGEF domain PF00621 IPR000219
GO:0005089
GO:0005622
GO:0035023
 LCP PVALUE
RNA_pol_Rpb1_2 RNA polymerase Rpb1, domain 2 PF00623 IPR000722
GO:0003677
GO:0003899
GO:0006350
 LCP RDFF
Gelsolin Gelsolin repeat PF00626 IPR007123
LCP FUSION
UBA UBA/TS-N domain PF00627 IPR000449
LCP RDFF
HHH Helix-hairpin-helix motif PF00633 IPR000445
GO:0003677
 LCP DOMAINGA
Ribonuclease_3 RNase3 domain PF00636 IPR000999
GO:0003723
GO:0004525
GO:0006396
 LCP DOMAINGA
Clathrin Region in Clathrin and VPS PF00637
LCP FUSION
zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar) PF00642 IPR000571
GO:0003676
GO:0008270
 LCP RDFF
SRP1_TIP1 Seripauperin and TIP1 family PF00660 IPR000992
GO:0006950
 LCP DOMAINGA
E1_dh Dehydrogenase E1 component PF00676 IPR001017
GO:0008152
GO:0016624
 LCP DOMAINGA
HMGL-like HMGL-like PF00682 IPR000891
GO:0003824
 LCP DOMAINGA
Ribosomal_L1 Ribosomal protein L1p/L10e family PF00687 IPR002143
GO:0003723
GO:0006396
 LCP RDFF
Aconitase_C Aconitase C-terminal domain PF00694 IPR000573
GO:0008152
 LCP RDFF
AA_kinase Amino acid kinase family PF00696 IPR001048
GO:0008652
 LCP RDFF
Pyrophosphatase Inorganic pyrophosphatase PF00719 IPR008162
GO:0000287
GO:0004427
GO:0005737
GO:0006796
 LCP DOMAINGA
HhH-GPD HhH-GPD superfamily base excision DNA repair protein PF00730 IPR003265
GO:0006284
 LCP RDFF
AIRC AIR carboxylase PF00731 IPR000031
GO:0004638
GO:0006189
 LCP PVALUE
Septin Septin PF00735 IPR000038
GO:0005525
GO:0007049
 LCP RDFF
Lactamase_B Metallo-beta-lactamase superfamily PF00753
GO:0016787
 LCP RDFF
UBX UBX domain PF00789 IPR001012
LCP RDFF
Syntaxin Syntaxin PF00804 IPR006011
GO:0016020
 LCP DOMAINGA
PUF Pumilio-family RNA binding repeat PF00806 IPR001313
GO:0003723
 LCP PVALUE
Ribosomal_S17e Ribosomal S17 PF00833 IPR001210
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DOMAINGA
TCTP Translationally controlled tumour protein PF00838 IPR018105
LCP RDFF
MATH MATH domain PF00917 IPR002083
LCP RDFF
NB-ARC NB-ARC domain PF00931 IPR002182
GO:0005524
GO:0006915
 LCP FUSION
Glyco_transf_20 Glycosyltransferase family 20 PF00982 IPR001830
GO:0003824
GO:0005992
 LCP DOMAINGA
IF-2B Initiation factor 2 subunit family PF01008 IPR000649
GO:0044237
 LCP PE
Ribosomal_S3Ae Ribosomal S3Ae family PF01015 IPR001593
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DOMAINGA
GTP1_OBG GTP1/OBG PF01018 IPR006169
GO:0005525
 LCP RDFF
TatD_DNase TatD related DNase PF01026 IPR001130
GO:0016888
 LCP DPEA PE
UbiA UbiA prenyltransferase family PF01040 IPR000537
GO:0004659
GO:0016021
 LCP RDFF
DNA_ligase_A_M ATP dependent DNA ligase domain PF01068 IPR012310
GO:0003910
GO:0005524
GO:0006260
GO:0006281
GO:0006310
 LCP RDFF
Ribosomal_S19e Ribosomal protein S19e PF01090 IPR001266
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DOMAINGA
Ribosomal_S6e Ribosomal protein S6e PF01092 IPR001377
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DOMAINGA
G10 G10 protein PF01125 IPR001748
GO:0005634
 LCP INSITE
Tub Tub family PF01167 IPR000007
LCP FUSION
UPF0016 Uncharacterized protein family UPF0016 PF01169 IPR001727
GO:0016020
 LCP DIPD
Ribosomal_S28e Ribosomal protein S28e PF01200 IPR000289
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DOMAINGA
Oxysterol_BP Oxysterol-binding protein PF01237 IPR000648
GO:0008202
 LCP DOMAINGA
Ribosomal_L7Ae Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PF01248 IPR004038
LCP RDFF
Ribosomal_S21e Ribosomal protein S21e PF01249 IPR001931
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DOMAINGA
Ribosomal_S24e Ribosomal protein S24e PF01282 IPR001976
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DOMAINGA
Ribosomal_L13e Ribosomal protein L13e PF01294 IPR001380
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DOMAINGA
CAP_GLY CAP-Gly domain PF01302 IPR000938
LCP RDFF
tRNA_anti OB-fold nucleic acid binding domain PF01336 IPR004365
GO:0003676
 LCP RDFF
Collagen Collagen triple helix repeat (20 copies) PF01391 IPR008160
LCP FUSION
ENTH ENTH domain PF01417 IPR001026
LCP RDFF
Peptidase_M1 Peptidase family M1 PF01433 IPR014782
GO:0008237
GO:0008270
 LCP RDFF
Pentapeptide_2 Pentapeptide repeats (8 copies) PF01469 IPR002989
LCP PE
S4 S4 domain PF01479 IPR002942
GO:0003723
 LCP RDFF
Aa_trans Transmembrane amino acid transporter protein PF01490 IPR013057
LCP RDFF
PAPS_reduct Phosphoadenosine phosphosulfate reductase family PF01507 IPR002500
GO:0008152
GO:0016740
 LCP DOMAINGA
TruB_N TruB family pseudouridylate synthase (N terminal domain) PF01509 IPR002501
GO:0006396
 LCP RDFF
Glyco_hydro_47 Glycosyl hydrolase family 47 PF01532 IPR001382
GO:0004571
GO:0005509
GO:0016020
 LCP PVALUE
Peptidase_M20 Peptidase family M20/M25/M40 PF01546 IPR002933
GO:0008152
GO:0016787
 LCP FUSION
DnaJ_C DnaJ C terminal region PF01556 IPR002939
GO:0006457
GO:0051082
 LCP RDFF
GCV_T Aminomethyltransferase folate-binding domain PF01571 IPR006222
GO:0004047
GO:0005737
GO:0006546
 LCP DOMAINGA
IF4E Eukaryotic initiation factor 4E PF01652 IPR001040
GO:0003723
GO:0003743
GO:0005737
GO:0006413
 LCP PE
Ribosomal_S27e Ribosomal protein S27 PF01667 IPR000592
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DOMAINGA
IBB Importin beta binding domain PF01749 IPR002652
GO:0005634
GO:0005643
GO:0005737
GO:0006606
GO:0006886
GO:0008565
 LCP RDFF
ACOX Acyl-CoA oxidase PF01756 IPR002655
GO:0003997
GO:0005777
GO:0006635
GO:0055114
 LCP RDFF
Ribosomal_L27e Ribosomal L27e protein family PF01777 IPR001141
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DOMAINGA
Glyco_transf_15 Glycolipid 2-alpha-mannosyltransferase PF01793 IPR002685
GO:0004377
GO:0006486
GO:0016020
 LCP DOMAINGA
Nop Putative snoRNA binding domain PF01798 IPR002687
LCP RDFF
ACT ACT domain PF01842 IPR002912
GO:0008152
GO:0016597
 LCP RDFF
FF FF domain PF01846 IPR002713
LCP RDFF
DUF77 Domain of unknown function DUF77 PF01910 IPR002767
LCP DOMAINGA
vATP-synt_E ATP synthase (E/31 kDa) subunit PF01991 IPR002842
GO:0015986
GO:0033178
GO:0046961
 LCP RDFF
vATP-synt_AC39 ATP synthase (C/AC39) subunit PF01992 IPR002843
GO:0015078
GO:0015986
GO:0033177
 LCP PE
CBFB_NFYA CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B PF02045 IPR001289
GO:0003700
GO:0005634
GO:0006355
 LCP RDFF
Peptidase_M18 Aminopeptidase I zinc metalloprotease (M18) PF02127 IPR001948
GO:0004177
GO:0005773
GO:0006508
GO:0008270
 LCP RDFF
Beach Beige/BEACH domain PF02138 IPR000409
LCP FUSION
WH2 WH2 motif PF02205 IPR003124
LCP RDFF
zf-UBR Putative zinc finger in N-recognin (UBR box) PF02207 IPR003126
GO:0004842
GO:0008270
 LCP RDFF
VHP Villin headpiece domain PF02209 IPR003128
GO:0003779
GO:0007010
 LCP FUSION
PA PA domain PF02225 IPR003137
LCP RDFF
FAT FAT domain PF02259 IPR003151
LCP RDFF
FATC FATC domain PF02260 IPR003152
LCP RDFF
TFIID-31kDa Transcription initiation factor IID, 31kD subunit PF02291 IPR003162
GO:0006352
 LCP RDFF
HORMA HORMA domain PF02301 IPR003511
GO:0007067
 LCP PE
CDC48_N Cell division protein 48 (CDC48), N-terminal domain PF02359 IPR003338
GO:0005524
 LCP DOMAINGA
HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF02518 IPR003594
GO:0005524
 LCP RDFF
PhzC-PhzF Phenazine biosynthesis-like protein PF02567 IPR003719
GO:0003824
GO:0009058
 LCP INSITE
TMP-TENI Thiamine monophosphate synthase/TENI PF02581 IPR003733
GO:0004789
GO:0009228
 LCP PVALUE
SCO1-SenC SCO1/SenC PF02630 IPR003782
LCP DOMAINGA
PAH Paired amphipathic helix repeat PF02671 IPR003822
GO:0005634
GO:0006355
 LCP RDFF
DUF221 Domain of unknown function DUF221 PF02714 IPR003864
GO:0016020
 LCP RDFF
SKIP_SNW SKIP/SNW domain PF02731 IPR004015
GO:0000398
GO:0005515
GO:0005681
 LCP PE
Ku Ku70/Ku80 beta-barrel domain PF02735 IPR006164
GO:0003677
GO:0004003
GO:0006303
 LCP RDFF
Transket_pyr Transketolase, pyrimidine binding domain PF02779 IPR005475
LCP RDFF
Transketolase_C Transketolase, C-terminal domain PF02780 IPR005476
GO:0003824
GO:0008152
 LCP RDFF
UIM Ubiquitin interaction motif PF02809 IPR003903
LCP RDFF
Alpha_kinase Alpha-kinase family PF02816 IPR004166
GO:0004674
GO:0005524
GO:0006468
 LCP FUSION
PGM_PMM_I Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PF02878 IPR005844
GO:0005975
GO:0016868
 LCP RDFF
PGM_PMM_II Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PF02879 IPR005845
GO:0005975
GO:0016868
 LCP RDFF
SRP54_N SRP54-type protein, helical bundle domain PF02881 IPR013822
GO:0005515
GO:0005525
GO:0006614
 LCP RDFF
GRAM GRAM domain PF02893 IPR004182
LCP FUSION
SRP_SPB Signal peptide binding domain PF02978 IPR004125
GO:0006614
GO:0008312
GO:0048500
 LCP RDFF
Cyclin_C Cyclin, C-terminal domain PF02984 IPR004367
GO:0005634
 LCP RDFF
4HBT Thioesterase superfamily PF03061 IPR006683
LCP PE
BAR BAR domain PF03114 IPR004148
GO:0005515
GO:0005737
 LCP DIPD
HGTP_anticodon Anticodon binding domain PF03129 IPR004154
GO:0004812
GO:0005524
GO:0006412
 LCP GPE
Yippee Yippee putative zinc-binding protein PF03226 IPR004910
LCP PE
GILT Gamma interferon inducible lysosomal thiol reductase (GILT) PF03227 IPR004911
LCP PE
Ribosomal_S25 S25 ribosomal protein PF03297 IPR004977
LCP DOMAINGA
PMM Eukaryotic phosphomannomutase PF03332 IPR005002
GO:0004615
GO:0005737
GO:0019307
 LCP PE
TFIID_30kDa Transcription initiation factor TFIID 23-30kDa subunit PF03540 IPR003923
GO:0003702
GO:0005634
GO:0006352
 LCP RDFF
DCX Doublecortin PF03607 IPR003533
GO:0023034
 LCP FUSION
Nrap Nrap protein PF03813 IPR005554
LCP DPEA PE
TFIID_20kDa Transcription initiation factor TFIID subunit A PF03847 IPR003228
GO:0005669
GO:0006352
GO:0016986
 LCP PE
TLE_N Groucho/TLE N-terminal Q-rich domain PF03920 IPR005617
LCP FUSION
Ribosomal_L2_C Ribosomal Proteins L2, C-terminal domain PF03947 IPR022669
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DOMAINGA
tRNA-synt_1c_C tRNA synthetases class I (E and Q), anti-codon binding domain PF03950 IPR020059
GO:0000166
GO:0004812
GO:0005524
GO:0005737
GO:0006412
GO:0006418
 LCP DOMAINGA
Nnf1 Nnf1 PF03980 IPR007128
LCP DPEA PE
Sas10_Utp3 Sas10/Utp3/C1D family PF04000 IPR007146
LCP DOMAINGA
Utp12 Dip2/Utp12 Family PF04003 IPR007148
LCP GPE
Mpp10 Mpp10 protein PF04006 IPR007151
LCP INSITE
PWP2 Periodic tryptophan protein 2 WD repeat associated presumed domain PF04047
LCP GPE
Not1 CCR4-Not complex component, Not1 PF04054 IPR007196
LCP DOMAINGA
Nop14 Nop14-like family PF04147 IPR007276
LCP INSITE
Utp21 Utp21 specific WD40 associated putative domain PF04192 IPR007319
GO:0006364
GO:0032040
 LCP GPE
TP6A_N Type IIB DNA topoisomerase PF04406 IPR013049
GO:0003677
GO:0003824
GO:0005524
GO:0005694
GO:0006259
 LCP DPEA PE
HA2 Helicase associated domain (HA2) PF04408 IPR007502
GO:0004386
 LCP GPE
SWIRM SWIRM domain PF04433 IPR007526
LCP DOMAINGA
zf-HIT HIT zinc finger PF04438 IPR007529
LCP PE
DUF572 Family of unknown function (DUF572) PF04502 IPR007590
LCP PE
SSDP Single-stranded DNA binding protein, SSDP PF04503 IPR007591
GO:0003677
GO:0005634
 LCP FUSION
RNA_pol_Rpb2_7 RNA polymerase Rpb2, domain 7 PF04560 IPR007641
GO:0003677
GO:0003899
GO:0006350
 LCP DOMAINGA
RNA_pol_Rpb2_2 RNA polymerase Rpb2, domain 2 PF04561 IPR007642
GO:0003677
GO:0003899
GO:0006350
 LCP DOMAINGA
RNA_pol_Rpb2_1 RNA polymerase beta subunit PF04563 IPR007644
GO:0003677
GO:0003899
GO:0006350
 LCP DOMAINGA
RNA_pol_Rpb2_3 RNA polymerase Rpb2, domain 3 PF04565 IPR007645
GO:0003677
GO:0003899
GO:0006350
 LCP DOMAINGA
Ribophorin_I Ribophorin I PF04597 IPR007676
GO:0004579
GO:0005783
GO:0006486
GO:0016021
 LCP DPEA PE
ASF1_hist_chap ASF1 like histone chaperone PF04729 IPR006818
GO:0005634
GO:0006333
 LCP DPEA PE
Coatomer_E Coatomer epsilon subunit PF04733 IPR006822
GO:0005198
GO:0005515
GO:0006890
GO:0030126
 LCP INSITE
zf-Sec23_Sec24 Sec23/Sec24 zinc finger PF04810 IPR006895
GO:0005515
GO:0006886
GO:0006888
GO:0008270
GO:0030127
 LCP DOMAINGA
SNF5 SNF5 / SMARCB1 / INI1 PF04855 IPR006939
GO:0000228
GO:0006338
 LCP PE
Dynamitin Dynamitin PF04912 IPR006996
GO:0005869
GO:0007017
 LCP DPEA
PAP_RNA-bind Poly(A) polymerase predicted RNA binding domain PF04926 IPR007010
GO:0003723
GO:0004652
GO:0005634
GO:0043631
 LCP PVALUE
DNA_pol_phi DNA polymerase phi PF04931 IPR007015
GO:0003677
GO:0003887
GO:0006350
 LCP PE
RNA_pol_Rpb1_1 RNA polymerase Rpb1, domain 1 PF04997 IPR007080
GO:0003677
GO:0003899
GO:0006350
 LCP RCDP
Spo12 Spo12 family PF05032 IPR007727
LCP INSITE
Nsp1_C Nsp1-like C-terminal region PF05064 IPR007758
GO:0005643
GO:0017056
 LCP DOMAINGA
DUF699 Putative ATPase (DUF699) PF05127 IPR007807
LCP GPE
Fip1 Fip1 motif PF05182 IPR007854
LCP PE
Dpy-30 Dpy-30 motif PF05186 IPR007858
LCP INSITE
Hom_end_hint Hom_end-associated Hint PF05203 IPR007868
GO:0003677
GO:0004519
GO:0030908
 LCP GPE
Hom_end Homing endonuclease PF05204 IPR007869
GO:0003677
GO:0004519
GO:0030908
 LCP GPE
Chorion_3 Chorion family 3 PF05387
LCP PE
SIN1 Stress-activated map kinase interacting protein 1 (SIN1) PF05422 IPR008828
LCP DPEA PE
Serendipity_A Serendipity locus alpha protein (SRY-A) PF05482 IPR008837
GO:0005737
GO:0007349
GO:0016020
 LCP DPEA PE
PAXNEB PAXNEB protein PF05625 IPR008728
GO:0006357
GO:0033588
 LCP PE
NACHT NACHT domain PF05729
LCP FUSION
Tcp11 T-complex protein 11 PF05794 IPR008862
LCP DOMAINGA
Suf Suppressor of forked protein (Suf) PF05843 IPR008847
GO:0005634
GO:0006397
 LCP PE
Mt_ATP-synt_D ATP synthase D chain, mitochondrial (ATP5H) PF05873
GO:0000276
GO:0015078
GO:0015986
 LCP PE
NPR2 Nitrogen permease regulator 2 PF06218 IPR009348
LCP DPEA PE
Isy1 Isy1-like splicing family PF06246 IPR009360
LCP INSITE
Elongin_A RNA polymerase II transcription factor SIII (Elongin) subunit A PF06881 IPR010684
GO:0005634
GO:0016021
GO:0045449
 LCP PE
HET Heterokaryon incompatibility protein (HET) PF06985 IPR010730
LCP FUSION
SOCS_box SOCS box PF07525 IPR001496
GO:0023034
 LCP FUSION
Hairy_orange Hairy Orange PF07527 IPR003650
GO:0003677
GO:0006355
 LCP GPE
EGF_CA Calcium binding EGF domain PF07645 IPR013091
LCP PE
NOSIC NOSIC (NUC001) domain PF08060 IPR012976
LCP RCDP
TFIIB_Zn_Ribbon TFIIB zinc-binding PF08271 IPR013137
GO:0008270
GO:0045449
 LCP PVALUE
U3_snoRNA_assoc U3 snoRNA associated PF08297 IPR013268
LCP INSITE
Fes1 Nucleotide exchange factor Fes1 PF08609 IPR013918
LCP PVALUE
Rxt3 Histone deacetylation protein Rxt3 PF08642 IPR013951
LCP INSITE
ChAPs ChAPs (Chs5p-Arf1p-binding proteins) PF09295 IPR015374
LCP INSITE



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