Pfam ID |
Description |
Accession |
Interpro ID |
GO ID |
Notes |
Source |
Pkinase |
Protein kinase domain |
PF00069 |
IPR017442 |
|
 |
|
Ras |
Ras family |
PF00071 |
IPR013753 |
|
 |
|
PH |
PH domain |
PF00169 |
IPR001849 |
|
 |
|
RCC1 |
Regulator of chromosome condensation (RCC1) |
PF00415 |
IPR000408 |
|
 |
|
PI3_PI4_kinase |
Phosphatidylinositol 3- and 4-kinase |
PF00454 |
IPR000403 |
|
 |
|
TPR_1 |
Tetratricopeptide repeat |
PF00515 |
IPR001440 |
|
 |
|
LRR_1 |
Leucine Rich Repeat |
PF00560 |
IPR001611 |
|
 |
|
TBC |
TBC domain |
PF00566 |
IPR000195 |
|
 |
|
PDZ |
PDZ domain (Also known as DHR or GLGF) |
PF00595 |
IPR001478 |
|
 |
|
RasGAP |
GTPase-activator protein for Ras-like GTPase |
PF00616 |
IPR001936 |
|
 |
|
RasGEF |
RasGEF domain |
PF00617 |
IPR001895 |
|
 |
|
RasGEF_N |
Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal motif |
PF00618 |
IPR000651 |
|
 |
|
RhoGAP |
RhoGAP domain |
PF00620 |
IPR000198 |
|
 |
|
RhoGEF |
RhoGEF domain |
PF00621 |
IPR000219 |
|
 |
|
Ran_BP1 |
RanBP1 domain |
PF00638 |
IPR000156 |
|
 |
|
zf-RanBP |
Zn-finger in Ran binding protein and others |
PF00641 |
IPR001876 |
|
 |
|
PBD |
P21-Rho-binding domain |
PF00786 |
IPR000095 |
|
 |
|
RA |
Ras association (RalGDS/AF-6) domain |
PF00788 |
IPR000159 |
|
 |
|
PI3K_rbd |
PI3-kinase family, ras-binding domain |
PF00794 |
IPR000341 |
|
 |
|
PAS |
PAS fold |
PF00989 |
IPR013767 |
|
 |
|
GDI |
GDP dissociation inhibitor |
PF00996 |
IPR018203 |
|
 |
|
TIG |
IPT/TIG domain |
PF01833 |
IPR002909 |
|
 |
|
Rho_GDI |
RHO protein GDP dissociation inhibitor |
PF02115 |
IPR000406 |
|
 |
|
NTF2 |
Nuclear transport factor 2 (NTF2) domain |
PF02136 |
IPR002075 |
|
 |
|
Rap_GAP |
Rap/ran-GAP |
PF02145 |
IPR000331 |
|
 |
|
HR1 |
Hr1 repeat |
PF02185 |
IPR000861 |
|
 |
|
RBD |
Raf-like Ras-binding domain |
PF02196 |
IPR003116 |
|
 |
|
VPS9 |
Vacuolar sorting protein 9 (VPS9) domain |
PF02204 |
IPR003123 |
|
 |
|
RPH3A_effector |
Rabphilin-3A effector domain |
PF02318 |
IPR003315 |
|
 |
|
Fic |
Fic/DOC family |
PF02661 |
IPR003812 |
|
 |
|
RUN |
RUN domain |
PF02759 |
IPR004012 |
|
 |
|
HEAT |
HEAT repeat |
PF02985 |
IPR000357 |
|
 |
|
IpaB_EvcA |
IpaB/EvcA family |
PF03278 |
IPR004959 |
|
 |
|
CAS_CSE1 |
CAS/CSE protein, C-terminus |
PF03378 |
IPR005043 |
|
 |
|
Binary_toxA |
Clostridial binary toxin A |
PF03496 |
IPR003540 |
|
 |
|
YopE |
Yersinia virulence determinant (YopE) |
PF03545 |
IPR014773 |
|
 |
|
PRONE |
PRONE (Plant-specific Rop nucleotide exchanger) |
PF03759 |
IPR005512 |
|
 |
|
IBN_N |
Importin-beta N-terminal domain |
PF03810 |
IPR001494 |
|
 |
|
Sybindin |
Sybindin-like family |
PF04099 |
IPR007233 |
|
 |
|
Mss4 |
Mss4 protein |
PF04421 |
IPR007515 |
|
 |
|
Drf_FH3 |
Diaphanous FH3 Domain |
PF06367 |
IPR010472 |
|
 |
|
Drf_GBD |
Diaphanous GTPase-binding Domain |
PF06371 |
IPR010473 |
|
 |
|
Sec2p |
GDP/GTP exchange factor Sec2p |
PF06428 |
IPR009449 |
|
 |
|
Arfaptin |
Arfaptin-like domain |
PF06456 |
IPR010504 |
|
 |
|
Ded_cyto |
Dedicator of cytokinesis |
PF06920 |
IPR010703 |
|
 |
|
SopE_GEF |
SopE GEF domain |
PF07487 |
IPR016019 |
|
 |
|
V-set |
Immunoglobulin V-set domain |
PF07686 |
IPR013106 |
|
 |
|
Plexin_cytopl |
Plexin cytoplasmic region |
PF08337 |
IPR013548 |
|
 |
|
Xpo1 |
Exportin 1-like protein |
PF08389 |
IPR013598 |
|
 |
|
Cse1 |
Cse1 |
PF08506 |
IPR013713 |
|
 |
|
CRM1_C |
CRM1 C terminal |
PF08767 |
IPR014877 |
|
 |
|
Rho_Binding |
Rho Binding |
PF08912 |
IPR015008 |
|
 |
|
GTPase_binding |
GTPase binding |
PF09027 |
IPR015116 |
|
 |
|
Rab5-bind |
Rab5 binding |
PF09311 |
IPR015390 |
|
 |
|
RBD-FIP |
FIP domain |
PF09457 |
IPR019018 |
|
 |
|
Rac1 |
Rac1-binding domain |
PF09632 |
IPR019093 |
|
 |
|
SH3_1 |
SH3 domain |
PF00018 |
IPR001452 |
|
 |
|
Ank |
Ankyrin repeat |
PF00023 |
IPR002110 |
|
 |
|
efhand |
EF hand |
PF00036 |
IPR018248 |
|
 |
|
ADH_zinc_N |
Zinc-binding dehydrogenase |
PF00107 |
IPR013149 |
|
 |
|
PB1 |
PB1 domain |
PF00564 |
IPR000270 |
|
 |
|
PX |
PX domain |
PF00787 |
IPR001683 |
|
 |
|
FYVE |
FYVE zinc finger |
PF01363 |
IPR000306 |
|
 |
|
ArfGap |
Putative GTPase activating protein for Arf |
PF01412 |
IPR001164 |
|
 |
|
Yip1 |
Yip1 domain |
PF04893 |
IPR006977 |
|
 |
|
HLH |
Helix-loop-helix DNA-binding domain |
PF00010 |
IPR001092 |
|
 |
|
KH_1 |
KH domain |
PF00013 |
IPR018111 |
|
 |
|
Arf |
ADP-ribosylation factor family |
PF00025 |
IPR006689 |
|
 |
|
Pyr_redox |
Pyridine nucleotide-disulphide oxidoreductase |
PF00070 |
IPR001327 |
|
 |
|
Response_reg |
Response regulator receiver domain |
PF00072 |
IPR001789 |
|
 |
|
Hexapep |
Bacterial transferase hexapeptide (three repeats) |
PF00132 |
IPR001451 |
|
 |
|
Aminotran_3 |
Aminotransferase class-III |
PF00202 |
IPR005814 |
|
 |
|
TPP_enzyme_M |
Thiamine pyrophosphate enzyme, central domain |
PF00205 |
IPR012000 |
|
 |
|
Lyase_1 |
Lyase |
PF00206 |
IPR022761 |
|
 |
|
Cofilin_ADF |
Cofilin/tropomyosin-type actin-binding protein |
PF00241 |
IPR002108 |
|
 |
|
TFIIB |
Transcription factor TFIIB repeat |
PF00382 |
IPR013150 |
|
 |
|
dCMP_cyt_deam_1 |
Cytidine and deoxycytidylate deaminase zinc-binding region |
PF00383 |
IPR002125 |
|
 |
|
Pkinase_C |
Protein kinase C terminal domain |
PF00433 |
IPR017892 |
|
 |
|
HSF_DNA-bind |
HSF-type DNA-binding |
PF00447 |
IPR000232 |
|
 |
|
Arginase |
Arginase family |
PF00491 |
IPR006035 |
|
 |
|
AMP-binding |
AMP-binding enzyme |
PF00501 |
IPR000873 |
|
 |
|
Arm |
Armadillo/beta-catenin-like repeat |
PF00514 |
IPR000225 |
|
 |
|
AA_kinase |
Amino acid kinase family |
PF00696 |
IPR001048 |
|
 |
|
PUF |
Pumilio-family RNA binding repeat |
PF00806 |
IPR001313 |
|
 |
|
Glyco_transf_20 |
Glycosyltransferase family 20 |
PF00982 |
IPR001830 |
|
 |
|
GrpE |
GrpE |
PF01025 |
IPR000740 |
|
 |
|
F_actin_cap_B |
F-actin capping protein, beta subunit |
PF01115 |
IPR001698 |
|
 |
|
DHO_dh |
Dihydroorotate dehydrogenase |
PF01180 |
IPR012135 |
|
 |
|
CK_II_beta |
Casein kinase II regulatory subunit |
PF01214 |
IPR000704 |
|
 |
|
Porin_3 |
Eukaryotic porin |
PF01459 |
IPR001925 |
|
 |
|
Peptidase_M20 |
Peptidase family M20/M25/M40 |
PF01546 |
IPR002933 |
|
 |
|
IF4E |
Eukaryotic initiation factor 4E |
PF01652 |
IPR001040 |
|
 |
|
Thi4 |
Thi4 family |
PF01946 |
|
|
 |
|
Peptidase_M18 |
Aminopeptidase I zinc metalloprotease (M18) |
PF02127 |
IPR001948 |
|
 |
|
TPP_enzyme_N |
Thiamine pyrophosphate enzyme, N-terminal TPP binding domain |
PF02776 |
IPR012001 |
|
 |
|
FAD-oxidase_C |
FAD linked oxidases, C-terminal domain |
PF02913 |
IPR004113 |
|
 |
|
Y_phosphatase2 |
Tyrosine phosphatase family |
PF03162 |
IPR004861 |
|
 |
|
YIF1 |
YIF1 |
PF03878 |
IPR005578 |
|
 |
|
Vps52 |
Vps52 / Sac2 family |
PF04129 |
IPR007258 |
|
 |
|
UNC-50 |
UNC-50 family |
PF05216 |
IPR007881 |
|
 |
|
SNARE |
SNARE domain |
PF05739 |
IPR000727 |
|
 |
|
Pkinase_Tyr |
Protein tyrosine kinase |
PF07714 |
IPR001245 |
|
 |
|
TFIIB_Zn_Ribbon |
TFIIB zinc-binding |
PF08271 |
IPR013137 |
|
 |
|
Miro |
Miro-like protein |
PF08477 |
IPR013684 |
|
 |
|
AAA |
ATPase family associated with various cellular activities (AAA) |
PF00004 |
IPR003959 |
|
 |
|
GTP_EFTU |
Elongation factor Tu GTP binding domain |
PF00009 |
IPR000795 |
|
 |
|
HSP20 |
Hsp20/alpha crystallin family |
PF00011 |
IPR002068 |
|
 |
|
SH2 |
SH2 domain |
PF00017 |
IPR000980 |
|
 |
|
cNMP_binding |
Cyclic nucleotide-binding domain |
PF00027 |
IPR000595 |
|
 |
|
GST_C |
Glutathione S-transferase, C-terminal domain |
PF00043 |
IPR004046 |
|
 |
|
Myosin_head |
Myosin head (motor domain) |
PF00063 |
IPR001609 |
|
 |
|
RRM_1 |
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) |
PF00076 |
IPR000504 |
|
 |
|
Trypsin |
Trypsin |
PF00089 |
IPR001254 |
|
 |
|
zf-C2H2 |
Zinc finger, C2H2 type |
PF00096 |
IPR007087 |
|
 |
|
zf-C3HC4 |
Zinc finger, C3HC4 type (RING finger) |
PF00097 |
IPR018957 |
|
 |
|
adh_short |
short chain dehydrogenase |
PF00106 |
IPR002198 |
|
 |
|
Thiolase_N |
Thiolase, N-terminal domain |
PF00108 |
IPR020616 |
|
 |
|
C1_1 |
Phorbol esters/diacylglycerol binding domain (C1 domain) |
PF00130 |
IPR002219 |
|
 |
|
Pro_isomerase |
Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD |
PF00160 |
IPR002130 |
|
 |
|
Cpn10 |
Chaperonin 10 Kd subunit |
PF00166 |
IPR020818 |
|
 |
|
bZIP_1 |
bZIP transcription factor |
PF00170 |
IPR011616 |
|
 |
|
Ets |
Ets-domain |
PF00178 |
IPR000418 |
|
 |
|
Iso_dh |
Isocitrate/isopropylmalate dehydrogenase |
PF00180 |
IPR001804 |
|
 |
|
HSP90 |
Hsp90 protein |
PF00183 |
IPR020576 |
|
 |
|
UDPGT |
UDP-glucoronosyl and UDP-glucosyl transferase |
PF00201 |
IPR002213 |
|
 |
|
Guanylate_cyc |
Adenylate and Guanylate cyclase catalytic domain |
PF00211 |
IPR001054 |
|
 |
|
DnaJ |
DnaJ domain |
PF00226 |
IPR001623 |
|
 |
|
MIP |
Major intrinsic protein |
PF00230 |
IPR000425 |
|
 |
|
ubiquitin |
Ubiquitin family |
PF00240 |
IPR000626 |
|
 |
|
Flavodoxin_1 |
Flavodoxin |
PF00258 |
IPR008254 |
|
 |
|
Ribonuc_red_sm |
Ribonucleotide reductase, small chain |
PF00268 |
IPR000358 |
|
 |
|
DEAD |
DEAD/DEAH box helicase |
PF00270 |
IPR011545 |
|
 |
|
Helicase_C |
Helicase conserved C-terminal domain |
PF00271 |
IPR001650 |
|
 |
|
PALP |
Pyridoxal-phosphate dependent enzyme |
PF00291 |
IPR001926 |
|
 |
|
FBPase |
Fructose-1-6-bisphosphatase |
PF00316 |
IPR000146 |
|
 |
|
Aconitase |
Aconitase family (aconitate hydratase) |
PF00330 |
IPR001030 |
|
 |
|
NDK |
Nucleoside diphosphate kinase |
PF00334 |
IPR001564 |
|
 |
|
WW |
WW domain |
PF00397 |
IPR001202 |
|
 |
|
WD40 |
WD domain, G-beta repeat |
PF00400 |
IPR019781 |
|
 |
|
LIM |
LIM domain |
PF00412 |
IPR001781 |
|
 |
|
Bromodomain |
Bromodomain |
PF00439 |
IPR001487 |
|
 |
|
UCH |
Ubiquitin carboxyl-terminal hydrolase |
PF00443 |
IPR001394 |
|
 |
|
PP2C |
Protein phosphatase 2C |
PF00481 |
IPR014045 |
|
 |
|
PRK |
Phosphoribulokinase / Uridine kinase family |
PF00485 |
IPR006083 |
|
 |
|
ALAD |
Delta-aminolevulinic acid dehydratase |
PF00490 |
IPR001731 |
|
 |
|
G-alpha |
G-protein alpha subunit |
PF00503 |
IPR001019 |
|
 |
|
CBS |
CBS domain pair |
PF00571 |
IPR000644 |
|
 |
|
Rhodanese |
Rhodanese-like domain |
PF00581 |
IPR001763 |
|
 |
|
Acetyltransf_1 |
Acetyltransferase (GNAT) family |
PF00583 |
IPR022610 |
|
 |
|
FCH |
Fes/CIP4 homology domain |
PF00611 |
IPR001060 |
|
 |
|
UBA |
UBA/TS-N domain |
PF00627 |
IPR000449 |
|
 |
|
HECT |
HECT-domain (ubiquitin-transferase) |
PF00632 |
IPR000569 |
|
 |
|
BTB |
BTB/POZ domain |
PF00651 |
IPR013069 |
|
 |
|
SRP1_TIP1 |
Seripauperin and TIP1 family |
PF00660 |
IPR000992 |
|
 |
|
Peptidase_M16 |
Insulinase (Peptidase family M16) |
PF00675 |
IPR011765 |
|
 |
|
E1_dh |
Dehydrogenase E1 component |
PF00676 |
IPR001017 |
|
 |
|
dUTPase |
dUTPase |
PF00692 |
IPR008180 |
|
 |
|
Aconitase_C |
Aconitase C-terminal domain |
PF00694 |
IPR000573 |
|
 |
|
Asparaginase |
Asparaginase |
PF00710 |
IPR006034 |
|
 |
|
EF1_GNE |
EF-1 guanine nucleotide exchange domain |
PF00736 |
IPR014038 |
|
 |
|
XPG_N |
XPG N-terminal domain |
PF00752 |
IPR006085 |
|
 |
|
RNB |
RNB domain |
PF00773 |
IPR001900 |
|
 |
|
DAGK_cat |
Diacylglycerol kinase catalytic domain |
PF00781 |
IPR001206 |
|
 |
|
DSPc |
Dual specificity phosphatase, catalytic domain |
PF00782 |
IPR000340 |
|
 |
|
ILVD_EDD |
Dehydratase family |
PF00920 |
IPR000581 |
|
 |
|
Sec1 |
Sec1 family |
PF00995 |
IPR001619 |
|
 |
|
Cys_Met_Meta_PP |
Cys/Met metabolism PLP-dependent enzyme |
PF01053 |
IPR000277 |
|
 |
|
Hint |
Hint module |
PF01079 |
IPR001767 |
|
 |
|
HH_signal |
Hedgehog amino-terminal signalling domain |
PF01085 |
IPR000320 |
|
 |
|
TFIIS_C |
Transcription factor S-II (TFIIS) |
PF01096 |
IPR001222 |
|
 |
|
GTP_cyclohydroI |
GTP cyclohydrolase I |
PF01227 |
IPR020602 |
|
 |
|
CAP_GLY |
CAP-Gly domain |
PF01302 |
IPR000938 |
|
 |
|
mRNA_cap_enzyme |
mRNA capping enzyme, catalytic domain |
PF01331 |
IPR001339 |
|
 |
|
Skp1 |
Skp1 family, dimerisation domain |
PF01466 |
IPR016072 |
|
 |
|
PUA |
PUA domain |
PF01472 |
IPR002478 |
|
 |
|
P_proprotein |
Proprotein convertase P-domain |
PF01483 |
IPR002884 |
|
 |
|
V_ATPase_I |
V-type ATPase 116kDa subunit family |
PF01496 |
IPR002490 |
|
 |
|
Glyco_hydro_47 |
Glycosyl hydrolase family 47 |
PF01532 |
IPR001382 |
|
 |
|
FAD_binding_4 |
FAD binding domain |
PF01565 |
IPR006094 |
|
 |
|
Choline_kinase |
Choline/ethanolamine kinase |
PF01633 |
IPR002573 |
|
 |
|
FtsJ |
FtsJ-like methyltransferase |
PF01728 |
IPR002877 |
|
 |
|
IBB |
Importin beta binding domain |
PF01749 |
IPR002652 |
|
 |
|
RRF |
Ribosome recycling factor |
PF01765 |
IPR002661 |
|
 |
|
NIF3 |
NIF3 (NGG1p interacting factor 3) |
PF01784 |
IPR002678 |
|
 |
|
Glyco_transf_15 |
Glycolipid 2-alpha-mannosyltransferase |
PF01793 |
IPR002685 |
|
 |
|
Ferric_reduct |
Ferric reductase like transmembrane component |
PF01794 |
IPR013130 |
|
 |
|
FF |
FF domain |
PF01846 |
IPR002713 |
|
 |
|
NAC |
NAC domain |
PF01849 |
IPR002715 |
|
 |
|
SIR2 |
Sir2 family |
PF02146 |
IPR003000 |
|
 |
|
RNA_POL_M_15KD |
RNA polymerases M/15 Kd subunit |
PF02150 |
IPR001529 |
|
 |
|
zf-TRAF |
TRAF-type zinc finger |
PF02176 |
|
|
 |
|
RIIa |
Regulatory subunit of type II PKA R-subunit |
PF02197 |
IPR003117 |
|
 |
|
SAM_PNT |
Sterile alpha motif (SAM)/Pointed domain |
PF02198 |
IPR003118 |
|
 |
|
E2F_TDP |
E2F/DP family winged-helix DNA-binding domain |
PF02319 |
IPR003316 |
|
 |
|
Glucan_synthase |
1,3-beta-glucan synthase component |
PF02364 |
IPR003440 |
|
 |
|
HATPase_c |
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase |
PF02518 |
IPR003594 |
|
 |
|
Pantoate_transf |
Ketopantoate hydroxymethyltransferase |
PF02548 |
IPR003700 |
|
 |
|
TPP_enzyme_C |
Thiamine pyrophosphate enzyme, C-terminal TPP binding domain |
PF02775 |
IPR011766 |
|
 |
|
Transket_pyr |
Transketolase, pyrimidine binding domain |
PF02779 |
IPR005475 |
|
 |
|
GRAM |
GRAM domain |
PF02893 |
IPR004182 |
|
 |
|
Peptidase_C1_2 |
Peptidase C1-like family |
PF03051 |
IPR004134 |
|
 |
|
BPL_LipA_LipB |
Biotin/lipoate A/B protein ligase family |
PF03099 |
IPR004143 |
|
 |
|
MH1 |
MH1 domain |
PF03165 |
IPR003619 |
|
 |
|
MH2 |
MH2 domain |
PF03166 |
IPR001132 |
|
 |
|
PRA1 |
PRA1 family protein |
PF03208 |
IPR004895 |
|
 |
|
V-ATPase_C |
V-ATPase subunit C |
PF03223 |
IPR004907 |
|
 |
|
FTR1 |
Iron permease FTR1 family |
PF03239 |
IPR004923 |
|
 |
|
PMM |
Eukaryotic phosphomannomutase |
PF03332 |
IPR005002 |
|
 |
|
Snf7 |
Snf7 |
PF03357 |
IPR005024 |
|
 |
|
Saccharop_dh |
Saccharopine dehydrogenase |
PF03435 |
IPR005097 |
|
 |
|
Tmemb_14 |
Transmembrane proteins 14C |
PF03647 |
IPR005349 |
|
 |
|
UPF0160 |
Uncharacterised protein family (UPF0160) |
PF03690 |
IPR003226 |
|
 |
|
mRNA_cap_C |
mRNA capping enzyme, C-terminal domain |
PF03919 |
IPR013846 |
|
 |
|
Skp1_POZ |
Skp1 family, tetramerisation domain |
PF03931 |
IPR016073 |
|
 |
|
Sec34 |
Sec34-like family |
PF04136 |
IPR007265 |
|
 |
|
Mog1 |
Ran-interacting Mog1 protein |
PF04603 |
IPR007681 |
|
 |
|
SIP1 |
Survival motor neuron (SMN) interacting protein 1 (SIP1) |
PF04938 |
|
|
 |
|
Dpy-30 |
Dpy-30 motif |
PF05186 |
IPR007858 |
|
 |
|
GMP_PDE_delta |
GMP-PDE, delta subunit |
PF05351 |
IPR008015 |
|
 |
|
Ran-binding |
RanGTP-binding protein |
PF05508 |
IPR008812 |
|
 |
|
SOCS_box |
SOCS box |
PF07525 |
IPR001496 |
|
 |
|
DUF1712 |
Fungal domain of unknown function (DUF1712) |
PF08217 |
IPR013176 |
|
 |
|
NBP1 |
Fungal Nap binding protein NBP1 |
PF08537 |
IPR013743 |
|
 |
|
TFIIH_BTF_p62_N |
TFIIH p62 subunit, N-terminal domain |
PF08567 |
IPR013876 |
|
 |
|
Vps51 |
Vps51/Vps67 |
PF08700 |
IPR014812 |
|
 |
|
Rgp1 |
Rgp1 |
PF08737 |
IPR014848 |
|
 |
|