Pfam ID |
Description |
Accession |
Interpro ID |
GO ID |
Notes |
Source |
Actin |
Actin |
PF00022 |
IPR004000 |
|
 |
|
efhand |
EF hand |
PF00036 |
IPR018248 |
|
 |
|
Myosin_head |
Myosin head (motor domain) |
PF00063 |
IPR001609 |
|
 |
|
Pkinase |
Protein kinase domain |
PF00069 |
IPR017442 |
|
 |
|
Metallophos |
Calcineurin-like phosphoesterase |
PF00149 |
IPR004843 |
|
 |
|
Pro_isomerase |
Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD |
PF00160 |
IPR002130 |
|
 |
|
FKBP_C |
FKBP-type peptidyl-prolyl cis-trans isomerase |
PF00254 |
IPR001179 |
|
 |
|
CH |
Calponin homology (CH) domain |
PF00307 |
IPR001715 |
|
 |
|
Spectrin |
Spectrin repeat |
PF00435 |
IPR002017 |
|
 |
|
IQ |
IQ calmodulin-binding motif |
PF00612 |
IPR000048 |
|
 |
|
Calpain_inhib |
Calpain inhibitor |
PF00748 |
IPR001259 |
|
 |
|
Troponin |
Troponin |
PF00992 |
IPR001978 |
|
 |
|
S_100 |
S-100/ICaBP type calcium binding domain |
PF01023 |
IPR013787 |
|
 |
|
Calpain_III |
Calpain large subunit, domain III |
PF01067 |
IPR022682 |
|
 |
|
F-actin_cap_A |
F-actin capping protein alpha subunit |
PF01267 |
IPR018315 |
|
 |
|
GFP |
Green fluorescent protein |
PF01353 |
IPR011584 |
|
 |
|
MARCKS |
MARCKS family |
PF02063 |
IPR002101 |
|
 |
|
Myosin_N |
Myosin N-terminal SH3-like domain |
PF02736 |
IPR004009 |
|
 |
|
CaMBD |
Calmodulin binding domain |
PF02888 |
IPR004178 |
|
 |
|
Sfi1 |
Sfi1 spindle body protein |
PF08457 |
IPR013665 |
|
 |
|
efhand_Ca_insen |
Ca2+ insensitive EF hand |
PF08726 |
IPR014837 |
|
 |
|
Ca_chan_IQ |
Voltage gated calcium channel IQ domain |
PF08763 |
IPR014873 |
|
 |
|
DUF1880 |
Domain of unknown function (DUF1880) |
PF08976 |
IPR015070 |
|
 |
|
SPARC_Ca_bdg |
Secreted protein acidic and rich in cysteine Ca binding region |
PF10591 |
|
|
 |
|
SH3_1 |
SH3 domain |
PF00018 |
IPR001452 |
|
 |
|
Kazal_1 |
Kazal-type serine protease inhibitor domain |
PF00050 |
IPR002350 |
|
 |
|
Ras |
Ras family |
PF00071 |
IPR013753 |
|
 |
|
Sod_Cu |
Copper/zinc superoxide dismutase (SODC) |
PF00080 |
IPR001424 |
|
 |
|
adh_short |
short chain dehydrogenase |
PF00106 |
IPR002198 |
|
 |
|
Mito_carr |
Mitochondrial carrier protein |
PF00153 |
IPR018108 |
|
 |
|
C2 |
C2 domain |
PF00168 |
IPR000008 |
|
 |
|
PH |
PH domain |
PF00169 |
IPR001849 |
|
 |
|
Proteasome |
Proteasome A-type and B-type |
PF00227 |
IPR001353 |
|
 |
|
Pyridoxal_deC |
Pyridoxal-dependent decarboxylase conserved domain |
PF00282 |
IPR002129 |
|
 |
|
NDK |
Nucleoside diphosphate kinase |
PF00334 |
IPR001564 |
|
 |
|
PI-PLC-Y |
Phosphatidylinositol-specific phospholipase C, Y domain |
PF00387 |
IPR001711 |
|
 |
|
PI-PLC-X |
Phosphatidylinositol-specific phospholipase C, X domain |
PF00388 |
IPR000909 |
|
 |
|
KOW |
KOW motif |
PF00467 |
IPR005824 |
|
 |
|
RasGEF |
RasGEF domain |
PF00617 |
IPR001895 |
|
 |
|
Peptidase_C2 |
Calpain family cysteine protease |
PF00648 |
IPR001300 |
|
 |
|
Oxidored_FMN |
NADH:flavin oxidoreductase / NADH oxidase family |
PF00724 |
IPR001155 |
|
 |
|
DAO |
FAD dependent oxidoreductase |
PF01266 |
IPR006076 |
|
 |
|
Thi4 |
Thi4 family |
PF01946 |
|
|
 |
|
An_peroxidase |
Animal haem peroxidase |
PF03098 |
IPR002007 |
|
 |
|
Exo_endo_phos |
Endonuclease/Exonuclease/phosphatase family |
PF03372 |
IPR005135 |
|
 |
|
PEMT |
Phospholipid methyltransferase |
PF04191 |
IPR007318 |
|
 |
|
RRM_1 |
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) |
PF00076 |
IPR000504 |
|
 |
|
Hexapep |
Bacterial transferase hexapeptide (three repeats) |
PF00132 |
IPR001451 |
|
 |
|
Cofilin_ADF |
Cofilin/tropomyosin-type actin-binding protein |
PF00241 |
IPR002108 |
|
 |
|
Flavodoxin_1 |
Flavodoxin |
PF00258 |
IPR008254 |
|
 |
|
Peptidase_S9 |
Prolyl oligopeptidase family |
PF00326 |
IPR001375 |
|
 |
|
UCH |
Ubiquitin carboxyl-terminal hydrolase |
PF00443 |
IPR001394 |
|
 |
|
Ion_trans |
Ion transport protein |
PF00520 |
IPR005821 |
|
 |
|
UBA |
UBA/TS-N domain |
PF00627 |
IPR000449 |
|
 |
|
Pyrophosphatase |
Inorganic pyrophosphatase |
PF00719 |
IPR008162 |
|
 |
|
RNA_pol_A_bac |
RNA polymerase Rpb3/RpoA insert domain |
PF01000 |
IPR011262 |
|
 |
|
TFIIS_C |
Transcription factor S-II (TFIIS) |
PF01096 |
IPR001222 |
|
 |
|
RNA_pol_L |
RNA polymerase Rpb3/Rpb11 dimerisation domain |
PF01193 |
IPR011261 |
|
 |
|
eIF-5a |
Eukaryotic initiation factor 5A hypusine, DNA-binding OB fold |
PF01287 |
IPR020189 |
|
 |
|
PseudoU_synth_1 |
tRNA pseudouridine synthase |
PF01416 |
IPR020097 |
|
 |
|
MAS20 |
MAS20 protein import receptor |
PF02064 |
IPR002056 |
|
 |
|
P34-Arc |
Arp2/3 complex, 34 kD subunit p34-Arc |
PF04045 |
IPR007188 |
|
 |
|
Myosin_TH1 |
Myosin tail |
PF06017 |
IPR010926 |
|
 |
|
AAA |
ATPase family associated with various cellular activities (AAA) |
PF00004 |
IPR003959 |
|
 |
|
HLH |
Helix-loop-helix DNA-binding domain |
PF00010 |
IPR001092 |
|
 |
|
Cytochrom_C |
Cytochrome c |
PF00034 |
IPR003088 |
|
 |
|
dsrm |
Double-stranded RNA binding motif |
PF00035 |
IPR001159 |
|
 |
|
Laminin_N |
Laminin N-terminal (Domain VI) |
PF00055 |
IPR008211 |
|
 |
|
Ldl_recept_a |
Low-density lipoprotein receptor domain class A |
PF00057 |
|
|
 |
|
Peptidase_S8 |
Subtilase family |
PF00082 |
IPR000209 |
|
 |
|
zf-C2H2 |
Zinc finger, C2H2 type |
PF00096 |
IPR007087 |
|
 |
|
C1_1 |
Phorbol esters/diacylglycerol binding domain (C1 domain) |
PF00130 |
IPR002219 |
|
 |
|
tRNA-synt_1 |
tRNA synthetases class I (I, L, M and V) |
PF00133 |
IPR002300 |
|
 |
|
tRNA-synt_2 |
tRNA synthetases class II (D, K and N) |
PF00152 |
IPR004364 |
|
 |
|
Iso_dh |
Isocitrate/isopropylmalate dehydrogenase |
PF00180 |
IPR001804 |
|
 |
|
14-3-3 |
14-3-3 protein |
PF00244 |
IPR000308 |
|
 |
|
Fork_head |
Fork head domain |
PF00250 |
IPR001766 |
|
 |
|
Helicase_C |
Helicase conserved C-terminal domain |
PF00271 |
IPR001650 |
|
 |
|
PAX |
'Paired box' domain |
PF00292 |
IPR001523 |
|
 |
|
Chitin_bind_4 |
Insect cuticle protein |
PF00379 |
IPR000618 |
|
 |
|
PIR |
Yeast PIR protein repeat |
PF00399 |
IPR000420 |
|
 |
|
PGM_PMM_IV |
Phosphoglucomutase/phosphomannomutase, C-terminal domain |
PF00408 |
IPR005843 |
|
 |
|
Prenyltrans |
Prenyltransferase and squalene oxidase repeat |
PF00432 |
IPR001330 |
|
 |
|
PI3_PI4_kinase |
Phosphatidylinositol 3- and 4-kinase |
PF00454 |
IPR000403 |
|
 |
|
NTP_transferase |
Nucleotidyl transferase |
PF00483 |
IPR005835 |
|
 |
|
FA_desaturase |
Fatty acid desaturase |
PF00487 |
IPR005804 |
|
 |
|
MutS_V |
MutS domain V |
PF00488 |
IPR000432 |
|
 |
|
Arm |
Armadillo/beta-catenin-like repeat |
PF00514 |
IPR000225 |
|
 |
|
TBC |
TBC domain |
PF00566 |
IPR000195 |
|
 |
|
WH1 |
WH1 domain |
PF00568 |
IPR000697 |
|
 |
|
DAGK_acc |
Diacylglycerol kinase accessory domain |
PF00609 |
IPR000756 |
|
 |
|
RhoGEF |
RhoGEF domain |
PF00621 |
IPR000219 |
|
 |
|
SPRY |
SPRY domain |
PF00622 |
IPR003877 |
|
 |
|
HECT |
HECT-domain (ubiquitin-transferase) |
PF00632 |
IPR000569 |
|
 |
|
PID |
Phosphotyrosine interaction domain (PTB/PID) |
PF00640 |
IPR006020 |
|
 |
|
E1_dh |
Dehydrogenase E1 component |
PF00676 |
IPR001017 |
|
 |
|
Plectin |
Plectin repeat |
PF00681 |
IPR001101 |
|
 |
|
DAGK_cat |
Diacylglycerol kinase catalytic domain |
PF00781 |
IPR001206 |
|
 |
|
PX |
PX domain |
PF00787 |
IPR001683 |
|
 |
|
PUF |
Pumilio-family RNA binding repeat |
PF00806 |
IPR001313 |
|
 |
|
ER_lumen_recept |
ER lumen protein retaining receptor |
PF00810 |
IPR000133 |
|
 |
|
SET |
SET domain |
PF00856 |
IPR001214 |
|
 |
|
Innexin |
Innexin |
PF00876 |
IPR000990 |
|
 |
|
Cullin |
Cullin family |
PF00888 |
IPR001373 |
|
 |
|
ThiF |
ThiF family |
PF00899 |
IPR000594 |
|
 |
|
Transaldolase |
Transaldolase |
PF00923 |
IPR001585 |
|
 |
|
Exonuc_X-T |
Exonuclease |
PF00929 |
IPR013520 |
|
 |
|
DPPIV_N |
Dipeptidyl peptidase IV (DPP IV) N-terminal region |
PF00930 |
IPR002469 |
|
 |
|
CDP-OH_P_transf |
CDP-alcohol phosphatidyltransferase |
PF01066 |
IPR000462 |
|
 |
|
CK_II_beta |
Casein kinase II regulatory subunit |
PF01214 |
IPR000704 |
|
 |
|
Coprogen_oxidas |
Coproporphyrinogen III oxidase |
PF01218 |
IPR001260 |
|
 |
|
RYDR_ITPR |
RIH domain |
PF01365 |
IPR000699 |
|
 |
|
PCI |
PCI domain |
PF01399 |
IPR000717 |
|
 |
|
Amidase |
Amidase |
PF01425 |
IPR000120 |
|
 |
|
ShK |
ShK domain-like |
PF01549 |
IPR003582 |
|
 |
|
B56 |
Protein phosphatase 2A regulatory B subunit (B56 family) |
PF01603 |
IPR002554 |
|
 |
|
MutS_I |
MutS domain I |
PF01624 |
IPR007695 |
|
 |
|
IF4E |
Eukaryotic initiation factor 4E |
PF01652 |
IPR001040 |
|
 |
|
Rhomboid |
Rhomboid family |
PF01694 |
|
|
 |
|
DIL |
DIL domain |
PF01843 |
IPR018444 |
|
 |
|
PTH2 |
Peptidyl-tRNA hydrolase PTH2 |
PF01981 |
IPR002833 |
|
 |
|
Translin |
Translin family |
PF01997 |
IPR002848 |
|
 |
|
RyR |
RyR domain |
PF02026 |
IPR003032 |
|
 |
|
Metallothio_5 |
Metallothionein family 5 |
PF02067 |
IPR000966 |
|
 |
|
RNA_POL_M_15KD |
RNA polymerases M/15 Kd subunit |
PF02150 |
IPR001529 |
|
 |
|
XYPPX |
XYPPX repeat |
PF02162 |
IPR006031 |
|
 |
|
GAS2 |
Growth-Arrest-Specific Protein 2 Domain |
PF02187 |
IPR003108 |
|
 |
|
WH2 |
WH2 motif |
PF02205 |
IPR003124 |
|
 |
|
Syja_N |
SacI homology domain |
PF02383 |
IPR002013 |
|
 |
|
Zip |
ZIP Zinc transporter |
PF02535 |
IPR003689 |
|
 |
|
MIR |
MIR domain |
PF02815 |
IPR003608 |
|
 |
|
PGM_PMM_I |
Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I |
PF02878 |
IPR005844 |
|
 |
|
PGM_PMM_II |
Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II |
PF02879 |
IPR005845 |
|
 |
|
GRAM |
GRAM domain |
PF02893 |
IPR004182 |
|
 |
|
UCR_TM |
Ubiquinol cytochrome reductase transmembrane region |
PF02921 |
IPR004192 |
|
 |
|
MAGSP |
Male accessory gland secretory protein |
PF03082 |
IPR004315 |
|
 |
|
BPL_LipA_LipB |
Biotin/lipoate A/B protein ligase family |
PF03099 |
IPR004143 |
|
 |
|
TTL |
Tubulin-tyrosine ligase family |
PF03133 |
IPR004344 |
|
 |
|
Tektin |
Tektin family |
PF03148 |
IPR000435 |
|
 |
|
Nucleoporin |
Non-repetitive/WGA-negative nucleoporin |
PF03177 |
IPR007187 |
|
 |
|
DNase_II |
Deoxyribonuclease II |
PF03265 |
IPR004947 |
|
 |
|
Glyco_hydro_81 |
Glycosyl hydrolase family 81 |
PF03639 |
IPR005200 |
|
 |
|
UPF0113 |
Uncharacterised protein family (UPF0113) |
PF03657 |
IPR005155 |
|
 |
|
Scramblase |
Scramblase |
PF03803 |
IPR005552 |
|
 |
|
F420_oxidored |
NADP oxidoreductase coenzyme F420-dependent |
PF03807 |
IPR004455 |
|
 |
|
ABM |
Antibiotic biosynthesis monooxygenase |
PF03992 |
IPR007138 |
|
 |
|
HSP9_HSP12 |
Heat shock protein 9 / 12 |
PF04119 |
IPR007250 |
|
 |
|
IATP |
Mitochondrial ATPase inhibitor, IATP |
PF04568 |
IPR007648 |
|
 |
|
ASF1_hist_chap |
ASF1 like histone chaperone |
PF04729 |
IPR006818 |
|
 |
|
Elf1 |
Transcription elongation factor Elf1 like |
PF05129 |
IPR007808 |
|
 |
|
DSS1_SEM1 |
DSS1/SEM1 family |
PF05160 |
IPR007834 |
|
 |
|
RCSD |
RCSD region |
PF05177 |
IPR007850 |
|
 |
|
Chorion_3 |
Chorion family 3 |
PF05387 |
|
|
 |
|
DUF1055 |
Domain of Unknown Function (DUF1055) |
PF06337 |
IPR006615 |
|
 |
|
RR_TM4-6 |
Ryanodine Receptor TM 4-6 |
PF06459 |
IPR009460 |
|
 |
|
Pericardin_rpt |
Pericardin like repeat |
PF07054 |
IPR009765 |
|
 |
|
Occludin_ELL |
Occludin homology domain |
PF07303 |
IPR010844 |
|
 |
|
TFIIS_M |
Transcription factor S-II (TFIIS), central domain |
PF07500 |
IPR003618 |
|
 |
|
EGF_CA |
Calcium binding EGF domain |
PF07645 |
IPR013091 |
|
 |
|
Pkinase_Tyr |
Protein tyrosine kinase |
PF07714 |
IPR001245 |
|
 |
|
Rad33 |
Rad33 |
PF08730 |
IPR014841 |
|
 |
|