RNA_pol_A_bac

• Pfam ID: RNA_pol_A_bac
• Description: RNA polymerase Rpb3/RpoA insert domain
• Accession: PF01000
• Interpro ID: IPR011262
• GO ID:

  GO:0003899

  GO:0006350

  GO:0046983

RNA_pol_A_bac forms interactions with

Pfam ID	Description	Accession	Interpro ID	GO ID	Notes	Source
RNA_pol_Rpb2_6	RNA polymerase Rpb2, domain 6	PF00562	IPR007120	GO:0003677 GO:0003899 GO:0006350
RNA_pol_L	RNA polymerase Rpb3/Rpb11 dimerisation domain	PF01193	IPR011261	GO:0003899 GO:0006350 GO:0046983
RNA_pol_N	RNA polymerases N / 8 kDa subunit	PF01194	IPR000268	GO:0003677 GO:0003899 GO:0006351
DNA_RNApol_7kD	DNA directed RNA polymerase, 7 kDa subunit	PF03604		GO:0003677 GO:0003899 GO:0006350
RNA_pol_Rpb1_3	RNA polymerase Rpb1, domain 3	PF04983	IPR007066	GO:0003677 GO:0003899 GO:0006350
RNA_pol_A_CTD	Bacterial RNA polymerase, alpha chain C terminal domain	PF03118	IPR011260	GO:0003677 GO:0003899 GO:0006350
RNA_pol_Rpb8	RNA polymerase Rpb8	PF03870	IPR005570	GO:0006350
RNA_pol_Rpb2_7	RNA polymerase Rpb2, domain 7	PF04560	IPR007641	GO:0003677 GO:0003899 GO:0006350
RNA_pol_Rpb2_2	RNA polymerase Rpb2, domain 2	PF04561	IPR007642	GO:0003677 GO:0003899 GO:0006350
RNA_pol_Rpb2_1	RNA polymerase beta subunit	PF04563	IPR007644	GO:0003677 GO:0003899 GO:0006350
RNA_pol_Rpb2_3	RNA polymerase Rpb2, domain 3	PF04565	IPR007645	GO:0003677 GO:0003899 GO:0006350
RNA_pol_Rpb2_5	RNA polymerase Rpb2, domain 5	PF04567	IPR007647	GO:0003677 GO:0003899 GO:0006350
efhand	EF hand	PF00036	IPR018248
CPSase_L_chain	Carbamoyl-phosphate synthase L chain, N-terminal domain	PF00289	IPR005481	GO:0003824 GO:0008152
PALP	Pyridoxal-phosphate dependent enzyme	PF00291	IPR001926	GO:0003824 GO:0008152 GO:0030170
WW	WW domain	PF00397	IPR001202	GO:0005515
RNA_pol_Rpb1_2	RNA polymerase Rpb1, domain 2	PF00623	IPR000722	GO:0003677 GO:0003899 GO:0006350
RNA_pol_Rpb5_C	RNA polymerase Rpb5, C-terminal domain	PF01191	IPR000783	GO:0003677 GO:0003899 GO:0006350
Biotin_carb_C	Biotin carboxylase C-terminal domain	PF02785	IPR005482	GO:0016874
RNA_pol_Rpb5_N	RNA polymerase Rpb5, N-terminal domain	PF03871	IPR005571	GO:0003677 GO:0003899 GO:0005634 GO:0006350
RNA_pol_Rpb7_N	RNA polymerase Rpb7-like, N-terminal domain	PF03876	IPR005576	GO:0003899 GO:0006350
RNA_pol_Rpb2_4	RNA polymerase Rpb2, domain 4	PF04566	IPR007646	GO:0003677 GO:0003899 GO:0006350
RNA_pol_Rpb1_1	RNA polymerase Rpb1, domain 1	PF04997	IPR007080	GO:0003677 GO:0003899 GO:0006350
RNA_pol_Rpb1_5	RNA polymerase Rpb1, domain 5	PF04998	IPR007081	GO:0003677 GO:0003899 GO:0006350
RNA_pol_Rpb1_4	RNA polymerase Rpb1, domain 4	PF05000	IPR007083	GO:0003677 GO:0003899 GO:0006350
dsrm	Double-stranded RNA binding motif	PF00035	IPR001159	GO:0003725 GO:0005622
Fer4	4Fe-4S binding domain	PF00037	IPR001450	GO:0009055 GO:0051536
GST_C	Glutathione S-transferase, C-terminal domain	PF00043	IPR004046
TIM	Triosephosphate isomerase	PF00121	IPR000652	GO:0004807 GO:0008152
tRNA-synt_1	tRNA synthetases class I (I, L, M and V)	PF00133	IPR002300	GO:0000166 GO:0004812 GO:0005524 GO:0005737 GO:0006412 GO:0006418
Sigma70_r1_2	Sigma-70 factor, region 1.2	PF00140	IPR009042	GO:0003677 GO:0003700 GO:0006352 GO:0006355 GO:0016987
RecA	recA bacterial DNA recombination protein	PF00154	IPR013765	GO:0003697 GO:0005524 GO:0006281
Ribosomal_S4	Ribosomal protein S4/S9 N-terminal domain	PF00163	IPR001912	GO:0005622 GO:0019843
Cpn10	Chaperonin 10 Kd subunit	PF00166	IPR020818	GO:0005737 GO:0006457
Bac_DNA_binding	Bacterial DNA-binding protein	PF00216	IPR000119	GO:0003677
Ribosomal_L16	Ribosomal protein L16p/L10e	PF00252	IPR016180	GO:0003735 GO:0005840 GO:0006412
Helicase_C	Helicase conserved C-terminal domain	PF00271	IPR001650	GO:0003676 GO:0004386 GO:0005524
Trp_syntA	Tryptophan synthase alpha chain	PF00290	IPR002028	GO:0004834 GO:0006568
Bac_DnaA	Bacterial dnaA protein	PF00308	IPR013317
GATase_2	Glutamine amidotransferases class-II	PF00310	IPR000583	GO:0008152
Biotin_lipoyl	Biotin-requiring enzyme	PF00364	IPR000089
6PGD	6-phosphogluconate dehydrogenase, C-terminal domain	PF00393	IPR006114	GO:0004616 GO:0006098 GO:0050661 GO:0055114
Ribosomal_S3_N	Ribosomal protein S3, N-terminal domain	PF00417	IPR008282	GO:0003735 GO:0005622 GO:0005840 GO:0006412
SSB	Single-strand binding protein family	PF00436	IPR000424	GO:0003697
Ribosomal_L20	Ribosomal protein L20	PF00453	IPR005813	GO:0003735 GO:0005622 GO:0005840 GO:0006412 GO:0019843
Ribosomal_L34	Ribosomal protein L34	PF00468	IPR000271	GO:0003735 GO:0005622 GO:0005840 GO:0006412
Ribosomal_L33	Ribosomal protein L33	PF00471	IPR001705	GO:0003735 GO:0005622 GO:0005840 GO:0006412
RF-1	RF-1 domain	PF00472	IPR000352	GO:0003747 GO:0006415
DNA_pol_A	DNA polymerase family A	PF00476	IPR001098	GO:0003677 GO:0003887 GO:0006260
FHA	FHA domain	PF00498	IPR000253
BRCT	BRCA1 C Terminus (BRCT) domain	PF00533	IPR001357	GO:0005622
Ribosomal_L12	Ribosomal protein L7/L12 C-terminal domain	PF00542	IPR013823	GO:0003735 GO:0005622 GO:0005840 GO:0006412
PP-binding	Phosphopantetheine attachment site	PF00550	IPR006163	GO:0048037
CLP_protease	Clp protease	PF00574	IPR001907	GO:0004252 GO:0006508
Ribonuclease_3	RNase3 domain	PF00636	IPR000999	GO:0003723 GO:0004525 GO:0006396
IF3_C	Translation initiation factor IF-3, C-terminal domain	PF00707	IPR019815	GO:0003743 GO:0006413
DNA_pol3_beta	DNA polymerase III beta subunit, N-terminal domain	PF00712	IPR022634	GO:0003677 GO:0003887 GO:0006260 GO:0008408 GO:0009360
DnaB	DnaB-like helicase N terminal domain	PF00772	IPR007693	GO:0003678 GO:0005524 GO:0006260
DAHP_synth_1	DAHP synthetase I family	PF00793	IPR006218	GO:0009058
Ribosomal_L21p	Ribosomal prokaryotic L21 protein	PF00829	IPR001787	GO:0003723 GO:0003735 GO:0005622 GO:0005840 GO:0006412
Ribosomal_L28	Ribosomal L28 family	PF00830	IPR001383	GO:0003735 GO:0005622 GO:0005840 GO:0006412
PseudoU_synth_2	RNA pseudouridylate synthase	PF00849	IPR006145	GO:0001522 GO:0003723 GO:0009451 GO:0009982
Ribosomal_S16	Ribosomal protein S16	PF00886	IPR000307	GO:0003735 GO:0005622 GO:0005840 GO:0006412
EF_TS	Elongation factor TS	PF00889	IPR014039	GO:0003746 GO:0005622 GO:0006414
Transpeptidase	Penicillin binding protein transpeptidase domain	PF00905	IPR001460	GO:0008658 GO:0009273
Ribosomal_L27	Ribosomal L27 protein	PF01016	IPR001684	GO:0003735 GO:0005622 GO:0005840 GO:0006412
SecA_PP_bind	SecA preprotein cross-linking domain	PF01043	IPR011130	GO:0005515 GO:0016020 GO:0017038
Glyco_hydro_38	Glycosyl hydrolases family 38 N-terminal domain	PF01074	IPR000602	GO:0004559 GO:0005975
Ribosomal_S18	Ribosomal protein S18	PF01084	IPR001648	GO:0003735 GO:0005622 GO:0005840 GO:0006412
FTSW_RODA_SPOVE	Cell cycle protein	PF01098	IPR001182	GO:0007049 GO:0016021
CoaE	Dephospho-CoA kinase	PF01121	IPR001977	GO:0004140 GO:0005524 GO:0015937
EFP	Elongation factor P (EF-P) OB domain	PF01132	IPR001059	GO:0003746 GO:0006414
GIDA	Glucose inhibited division protein A	PF01134	IPR002218	GO:0008033 GO:0050660
CTP_transf_1	Cytidylyltransferase family	PF01148	IPR000374	GO:0016020 GO:0016772
Pept_tRNA_hydro	Peptidyl-tRNA hydrolase	PF01195	IPR001328	GO:0004045 GO:0006412
Ribosomal_L17	Ribosomal protein L17	PF01196	IPR000456	GO:0003735 GO:0005622 GO:0005840 GO:0006412
Dus	Dihydrouridine synthase (Dus)	PF01207	IPR001269	GO:0008033 GO:0017150 GO:0050660 GO:0055114
Ribosomal_L19	Ribosomal protein L19	PF01245	IPR001857	GO:0003735 GO:0005622 GO:0005840 GO:0006412
Ribosomal_S6	Ribosomal protein S6	PF01250	IPR000529	GO:0003735 GO:0005840 GO:0006412 GO:0019843
Peptidase_A8	Signal peptidase (SPase) II	PF01252	IPR001872	GO:0004190 GO:0006508 GO:0016020
Ribosomal_L9_N	Ribosomal protein L9, N-terminal domain	PF01281	IPR020070
Ribosomal_L15	Ribosomal protein L15 amino terminal region	PF01305
Pep_deformylase	Polypeptide deformylase	PF01327	IPR000181	GO:0005506 GO:0006412 GO:0042586
5_3_exonuc	5'-3' exonuclease, C-terminal SAM fold	PF01367	IPR020047	GO:0003677 GO:0008409
SIS	SIS domain	PF01380	IPR001347	GO:0005529 GO:0005975
Peptidase_M41	Peptidase family M41	PF01434	IPR000642	GO:0004222 GO:0005524 GO:0006508
LysM	LysM domain	PF01476	IPR018392	GO:0016998
Acyltransferase	Acyltransferase	PF01553	IPR002123	GO:0008152 GO:0008415
Ribosomal_L35p	Ribosomal protein L35	PF01632	IPR021137	GO:0003735 GO:0005622 GO:0005840 GO:0006412
ACPS	4'-phosphopantetheinyl transferase superfamily	PF01648	IPR008278	GO:0000287 GO:0008897 GO:0009059
Ribosomal_S20p	Ribosomal protein S20	PF01649	IPR002583	GO:0003723 GO:0003735 GO:0005622 GO:0005840 GO:0006412
DNA_ligase_aden	NAD-dependent DNA ligase adenylation domain	PF01653	IPR013839	GO:0003911
SmpB	SmpB protein	PF01668	IPR000037	GO:0003723 GO:0006412
Flavokinase	Riboflavin kinase	PF01687	IPR015865	GO:0008531 GO:0009231
DUF28	Domain of unknown function DUF28	PF01709	IPR002876
IPPT	IPP transferase	PF01715	IPR002627	GO:0004811 GO:0005524 GO:0008033
PolyA_pol	Poly A polymerase head domain	PF01743	IPR002646	GO:0003723 GO:0006396 GO:0016779
tRNA_m1G_MT	tRNA (Guanine-1)-methyltransferase	PF01746	IPR016009
RRF	Ribosome recycling factor	PF01765	IPR002661	GO:0006412
LGT	Prolipoprotein diacylglyceryl transferase	PF01790	IPR001640	GO:0009249 GO:0016020 GO:0016757 GO:0042158
Methyltransf_5	MraW methylase family	PF01795	IPR002903	GO:0008168
zf-CHC2	CHC2 zinc finger	PF01807	IPR002694	GO:0003677 GO:0003896 GO:0006260 GO:0008270
60KD_IMP	60Kd inner membrane protein	PF02096	IPR001708	GO:0016021 GO:0051205
Cytidylate_kin	Cytidylate kinase	PF02224	IPR011994	GO:0004127 GO:0005524 GO:0006139
NusG	Transcription termination factor nusG	PF02357	IPR006645	GO:0003711 GO:0032968
UPF0079	Uncharacterised P-loop hydrolase UPF0079	PF02367	IPR003442
Methyltransf_4	Putative methyltransferase	PF02390	IPR003358	GO:0006400 GO:0008176
SMC_N	RecF/RecN/SMC N terminal domain	PF02463	IPR003395	GO:0005524 GO:0005694
GidB	Glucose inhibited division protein	PF02527	IPR003682	GO:0005737 GO:0006364 GO:0008649
DUF149	Uncharacterised BCR, YbaB family COG0718	PF02575	IPR004401
5_3_exonuc_N	5'-3' exonuclease, N-terminal resolvase-like domain	PF02739	IPR020046	GO:0003677 GO:0008409
DNA_pol3_beta_2	DNA polymerase III beta subunit, central domain	PF02767	IPR022637	GO:0003677 GO:0003887 GO:0006260 GO:0008408 GO:0009360
DNA_pol3_beta_3	DNA polymerase III beta subunit, C-terminal domain	PF02768	IPR022635	GO:0003677 GO:0003887 GO:0006260 GO:0008408 GO:0009360
S-AdoMet_synt_M	S-adenosylmethionine synthetase, central domain	PF02772	IPR022629
S-AdoMet_synt_C	S-adenosylmethionine synthetase, C-terminal domain	PF02773	IPR022630
CPSase_L_D2	Carbamoyl-phosphate synthase L chain, ATP binding domain	PF02786	IPR005479	GO:0003824 GO:0005524 GO:0008152
MurB_C	UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain	PF02873	IPR011601	GO:0008762 GO:0009252 GO:0055114
Formyl_trans_C	Formyl transferase, C-terminal domain	PF02911	IPR005793	GO:0009058 GO:0016742
Glyco_transf_28	Glycosyltransferase family 28 N-terminal domain	PF03033	IPR004276	GO:0005975 GO:0016758 GO:0030259
tRNA_Me_trans	tRNA methyl transferase	PF03054		GO:0005737 GO:0008033 GO:0016740
DNA_ligase_OB	NAD-dependent DNA ligase OB-fold domain	PF03120	IPR004150	GO:0003911 GO:0006260 GO:0006281
NAD_binding_2	NAD binding domain of 6-phosphogluconate dehydrogenase	PF03446	IPR006115	GO:0004616 GO:0006098 GO:0055114
TRCF	TRCF domain	PF03461	IPR005118	GO:0003684 GO:0004386 GO:0005524 GO:0006281
PCRF	PCRF domain	PF03462	IPR005139	GO:0005737 GO:0006415 GO:0016149
CorC_HlyC	Transporter associated domain	PF03471	IPR005170
Cons_hypoth95	Conserved hypothetical protein 95	PF03602	IPR004398	GO:0008168 GO:0031167
UPF0081	Uncharacterised protein family (UPF0081)	PF03652	IPR005227	GO:0005737 GO:0006281 GO:0006310 GO:0006974 GO:0016788
PBP_dimer	Penicillin-binding Protein dimerisation domain	PF03717	IPR005311	GO:0008658
Competence	Competence protein	PF03772	IPR004477
DnaB_C	DnaB-like helicase C terminal domain	PF03796	IPR007694	GO:0003678 GO:0005524 GO:0006260
SecG	Preprotein translocase SecG subunit	PF03840	IPR004692	GO:0009306 GO:0015450 GO:0016021
tRNA-synt_1c_C	tRNA synthetases class I (E and Q), anti-codon binding domain	PF03950	IPR020059	GO:0000166 GO:0004812 GO:0005524 GO:0005737 GO:0006412 GO:0006418
RPAP2_Rtr1	Rtr1/RPAP2 family	PF04181	IPR007308
Dala_Dala_lig_C	D-ala D-ala ligase C-terminus	PF07478	IPR011095	GO:0008716 GO:0009252
Glyco_hydro_38C	Glycosyl hydrolases family 38 C-terminal domain	PF07748	IPR011682	GO:0006013 GO:0015923
Anticodon_1	Anticodon-binding domain	PF08264	IPR013155	GO:0000166 GO:0004812 GO:0005524 GO:0005737 GO:0006412 GO:0006418