DUF28

• Pfam ID: DUF28
• Description: Domain of unknown function DUF28
• Accession: PF01709
• Interpro ID: IPR002876

DUF28 forms interactions with

Pfam ID	Description	Accession	Interpro ID	GO ID	Notes	Source
dsrm	Double-stranded RNA binding motif	PF00035	IPR001159	GO:0003725 GO:0005622
zf-C2H2	Zinc finger, C2H2 type	PF00096	IPR007087	GO:0005622 GO:0008270
TIM	Triosephosphate isomerase	PF00121	IPR000652	GO:0004807 GO:0008152
Sigma70_r1_2	Sigma-70 factor, region 1.2	PF00140	IPR009042	GO:0003677 GO:0003700 GO:0006352 GO:0006355 GO:0016987
Ribosomal_S4	Ribosomal protein S4/S9 N-terminal domain	PF00163	IPR001912	GO:0005622 GO:0019843
Cpn10	Chaperonin 10 Kd subunit	PF00166	IPR020818	GO:0005737 GO:0006457
Ribosomal_L16	Ribosomal protein L16p/L10e	PF00252	IPR016180	GO:0003735 GO:0005840 GO:0006412
Bac_DnaA	Bacterial dnaA protein	PF00308	IPR013317
Ribosomal_S3_N	Ribosomal protein S3, N-terminal domain	PF00417	IPR008282	GO:0003735 GO:0005622 GO:0005840 GO:0006412
SSB	Single-strand binding protein family	PF00436	IPR000424	GO:0003697
Ribosomal_L20	Ribosomal protein L20	PF00453	IPR005813	GO:0003735 GO:0005622 GO:0005840 GO:0006412 GO:0019843
Ribosomal_L34	Ribosomal protein L34	PF00468	IPR000271	GO:0003735 GO:0005622 GO:0005840 GO:0006412
RF-1	RF-1 domain	PF00472	IPR000352	GO:0003747 GO:0006415
BRCT	BRCA1 C Terminus (BRCT) domain	PF00533	IPR001357	GO:0005622
Ribosomal_L12	Ribosomal protein L7/L12 C-terminal domain	PF00542	IPR013823	GO:0003735 GO:0005622 GO:0005840 GO:0006412
PP-binding	Phosphopantetheine attachment site	PF00550	IPR006163	GO:0048037
Ribonuclease_3	RNase3 domain	PF00636	IPR000999	GO:0003723 GO:0004525 GO:0006396
IF3_C	Translation initiation factor IF-3, C-terminal domain	PF00707	IPR019815	GO:0003743 GO:0006413
Ribosomal_L21p	Ribosomal prokaryotic L21 protein	PF00829	IPR001787	GO:0003723 GO:0003735 GO:0005622 GO:0005840 GO:0006412
Ribosomal_L28	Ribosomal L28 family	PF00830	IPR001383	GO:0003735 GO:0005622 GO:0005840 GO:0006412
PseudoU_synth_2	RNA pseudouridylate synthase	PF00849	IPR006145	GO:0001522 GO:0003723 GO:0009451 GO:0009982
Ribosomal_S16	Ribosomal protein S16	PF00886	IPR000307	GO:0003735 GO:0005622 GO:0005840 GO:0006412
EF_TS	Elongation factor TS	PF00889	IPR014039	GO:0003746 GO:0005622 GO:0006414
RNA_pol_A_bac	RNA polymerase Rpb3/RpoA insert domain	PF01000	IPR011262	GO:0003899 GO:0006350 GO:0046983
Ribosomal_L27	Ribosomal L27 protein	PF01016	IPR001684	GO:0003735 GO:0005622 GO:0005840 GO:0006412
SecA_PP_bind	SecA preprotein cross-linking domain	PF01043	IPR011130	GO:0005515 GO:0016020 GO:0017038
Ribosomal_S18	Ribosomal protein S18	PF01084	IPR001648	GO:0003735 GO:0005622 GO:0005840 GO:0006412
CoaE	Dephospho-CoA kinase	PF01121	IPR001977	GO:0004140 GO:0005524 GO:0015937
EFP	Elongation factor P (EF-P) OB domain	PF01132	IPR001059	GO:0003746 GO:0006414
GIDA	Glucose inhibited division protein A	PF01134	IPR002218	GO:0008033 GO:0050660
CTP_transf_1	Cytidylyltransferase family	PF01148	IPR000374	GO:0016020 GO:0016772
Pept_tRNA_hydro	Peptidyl-tRNA hydrolase	PF01195	IPR001328	GO:0004045 GO:0006412
Ribosomal_L17	Ribosomal protein L17	PF01196	IPR000456	GO:0003735 GO:0005622 GO:0005840 GO:0006412
Ribosomal_L19	Ribosomal protein L19	PF01245	IPR001857	GO:0003735 GO:0005622 GO:0005840 GO:0006412
Ribosomal_S6	Ribosomal protein S6	PF01250	IPR000529	GO:0003735 GO:0005840 GO:0006412 GO:0019843
Ribosomal_L9_N	Ribosomal protein L9, N-terminal domain	PF01281	IPR020070
Ribosomal_L15	Ribosomal protein L15 amino terminal region	PF01305
Pep_deformylase	Polypeptide deformylase	PF01327	IPR000181	GO:0005506 GO:0006412 GO:0042586
5_3_exonuc	5'-3' exonuclease, C-terminal SAM fold	PF01367	IPR020047	GO:0003677 GO:0008409
Peptidase_M41	Peptidase family M41	PF01434	IPR000642	GO:0004222 GO:0005524 GO:0006508
Acyltransferase	Acyltransferase	PF01553	IPR002123	GO:0008152 GO:0008415
DUF21	Domain of unknown function DUF21	PF01595	IPR002550
Ribosomal_L35p	Ribosomal protein L35	PF01632	IPR021137	GO:0003735 GO:0005622 GO:0005840 GO:0006412
DNA_ligase_aden	NAD-dependent DNA ligase adenylation domain	PF01653	IPR013839	GO:0003911
IPPT	IPP transferase	PF01715	IPR002627	GO:0004811 GO:0005524 GO:0008033
PolyA_pol	Poly A polymerase head domain	PF01743	IPR002646	GO:0003723 GO:0006396 GO:0016779
tRNA_m1G_MT	tRNA (Guanine-1)-methyltransferase	PF01746	IPR016009
RRF	Ribosome recycling factor	PF01765	IPR002661	GO:0006412
LGT	Prolipoprotein diacylglyceryl transferase	PF01790	IPR001640	GO:0009249 GO:0016020 GO:0016757 GO:0042158
Methyltransf_5	MraW methylase family	PF01795	IPR002903	GO:0008168
zf-CHC2	CHC2 zinc finger	PF01807	IPR002694	GO:0003677 GO:0003896 GO:0006260 GO:0008270
60KD_IMP	60Kd inner membrane protein	PF02096	IPR001708	GO:0016021 GO:0051205
Methyltransf_4	Putative methyltransferase	PF02390	IPR003358	GO:0006400 GO:0008176
DUF150	Uncharacterised BCR, YhbC family COG0779	PF02576	IPR003728
5_3_exonuc_N	5'-3' exonuclease, N-terminal resolvase-like domain	PF02739	IPR020046	GO:0003677 GO:0008409
Formyl_trans_C	Formyl transferase, C-terminal domain	PF02911	IPR005793	GO:0009058 GO:0016742
tRNA_Me_trans	tRNA methyl transferase	PF03054		GO:0005737 GO:0008033 GO:0016740
DNA_ligase_OB	NAD-dependent DNA ligase OB-fold domain	PF03120	IPR004150	GO:0003911 GO:0006260 GO:0006281
PCRF	PCRF domain	PF03462	IPR005139	GO:0005737 GO:0006415 GO:0016149
DnaB_C	DnaB-like helicase C terminal domain	PF03796	IPR007694	GO:0003678 GO:0005524 GO:0006260