Pfam ID Description Accession Interpro ID GO ID
5_3_exonuc_N 5'-3' exonuclease, N-terminal resolvase-like domain PF02739 IPR020046
GO:0003677
GO:0008409



5_3_exonuc_N forms interactions with

Pfam ID Description Accession Interpro ID GO ID Notes Source
DNA_pol_A DNA polymerase family A PF00476 IPR001098
GO:0003677
GO:0003887
GO:0006260
 PDB IPFAM 3DID ME FUSION DIMA
5_3_exonuc 5'-3' exonuclease, C-terminal SAM fold PF01367 IPR020047
GO:0003677
GO:0008409
 PDB IPFAM 3DID ME DIMA
5_3_exonuc_N 5'-3' exonuclease, N-terminal resolvase-like domain PF02739 IPR020046
GO:0003677
GO:0008409
 PDB 3DID
Taq-exonuc Taq polymerase, exonuclease PF09281 IPR015361
GO:0001882
GO:0003887
GO:0006260
GO:0006281
 PDB IPFAM
RNaseH_C T4 RNase H, C terminal PF09293 IPR015372
PDB IPFAM 3DID
3_5_exonuc 3'-5' exonuclease PF01612 IPR002562
GO:0003676
GO:0005622
GO:0006139
GO:0008408
 HCP ME FUSION
dsrm Double-stranded RNA binding motif PF00035 IPR001159
GO:0003725
GO:0005622
 LCP DIMA
TIM Triosephosphate isomerase PF00121 IPR000652
GO:0004807
GO:0008152
 LCP DIMA
Sigma70_r1_2 Sigma-70 factor, region 1.2 PF00140 IPR009042
GO:0003677
GO:0003700
GO:0006352
GO:0006355
GO:0016987
 LCP DIMA
RecA recA bacterial DNA recombination protein PF00154 IPR013765
GO:0003697
GO:0005524
GO:0006281
 LCP DIMA
Ribosomal_S4 Ribosomal protein S4/S9 N-terminal domain PF00163 IPR001912
GO:0005622
GO:0019843
 LCP DIMA
Cpn10 Chaperonin 10 Kd subunit PF00166 IPR020818
GO:0005737
GO:0006457
 LCP DIMA
Bac_DNA_binding Bacterial DNA-binding protein PF00216 IPR000119
GO:0003677
 LCP DIMA
Ribosomal_L16 Ribosomal protein L16p/L10e PF00252 IPR016180
GO:0003735
GO:0005840
GO:0006412
 LCP DIMA
Bac_DnaA Bacterial dnaA protein PF00308 IPR013317
LCP DIMA
Ribosomal_S3_N Ribosomal protein S3, N-terminal domain PF00417 IPR008282
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
SSB Single-strand binding protein family PF00436 IPR000424
GO:0003697
 LCP DIMA
Ribosomal_L20 Ribosomal protein L20 PF00453 IPR005813
GO:0003735
GO:0005622
GO:0005840
GO:0006412
GO:0019843
 LCP DIMA
Ribosomal_L34 Ribosomal protein L34 PF00468 IPR000271
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
Ribosomal_L33 Ribosomal protein L33 PF00471 IPR001705
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
RF-1 RF-1 domain PF00472 IPR000352
GO:0003747
GO:0006415
 LCP DIMA
BRCT BRCA1 C Terminus (BRCT) domain PF00533 IPR001357
GO:0005622
 LCP DIMA
Ribosomal_L12 Ribosomal protein L7/L12 C-terminal domain PF00542 IPR013823
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
PP-binding Phosphopantetheine attachment site PF00550 IPR006163
GO:0048037
 LCP DIMA
CLP_protease Clp protease PF00574 IPR001907
GO:0004252
GO:0006508
 LCP DIMA
Ribonuclease_3 RNase3 domain PF00636 IPR000999
GO:0003723
GO:0004525
GO:0006396
 LCP DIMA
IF3_C Translation initiation factor IF-3, C-terminal domain PF00707 IPR019815
GO:0003743
GO:0006413
 LCP DIMA
DNA_pol3_beta DNA polymerase III beta subunit, N-terminal domain PF00712 IPR022634
GO:0003677
GO:0003887
GO:0006260
GO:0008408
GO:0009360
 LCP DIMA
DnaB DnaB-like helicase N terminal domain PF00772 IPR007693
GO:0003678
GO:0005524
GO:0006260
 LCP DIMA
Ribonuclease_P Ribonuclease P PF00825 IPR000100
GO:0000049
GO:0004526
GO:0008033
 LCP DIMA
Ribosomal_L21p Ribosomal prokaryotic L21 protein PF00829 IPR001787
GO:0003723
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
Ribosomal_L28 Ribosomal L28 family PF00830 IPR001383
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
PseudoU_synth_2 RNA pseudouridylate synthase PF00849 IPR006145
GO:0001522
GO:0003723
GO:0009451
GO:0009982
 LCP DIMA
Ribosomal_S16 Ribosomal protein S16 PF00886 IPR000307
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
EF_TS Elongation factor TS PF00889 IPR014039
GO:0003746
GO:0005622
GO:0006414
 LCP DIMA
Transpeptidase Penicillin binding protein transpeptidase domain PF00905 IPR001460
GO:0008658
GO:0009273
 LCP DIMA
Transgly Transglycosylase PF00912 IPR001264
GO:0003824
GO:0009252
GO:0009274
 LCP DIMA
RNA_pol_A_bac RNA polymerase Rpb3/RpoA insert domain PF01000 IPR011262
GO:0003899
GO:0006350
GO:0046983
 LCP DIMA
Ribosomal_L27 Ribosomal L27 protein PF01016 IPR001684
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
NusB NusB family PF01029 IPR006027
GO:0003723
GO:0006355
 LCP DIMA
SecA_PP_bind SecA preprotein cross-linking domain PF01043 IPR011130
GO:0005515
GO:0016020
GO:0017038
 LCP DIMA
Ribosomal_S18 Ribosomal protein S18 PF01084 IPR001648
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
FTSW_RODA_SPOVE Cell cycle protein PF01098 IPR001182
GO:0007049
GO:0016021
 LCP DIMA
CoaE Dephospho-CoA kinase PF01121 IPR001977
GO:0004140
GO:0005524
GO:0015937
 LCP DIMA
EFP Elongation factor P (EF-P) OB domain PF01132 IPR001059
GO:0003746
GO:0006414
 LCP DIMA
GIDA Glucose inhibited division protein A PF01134 IPR002218
GO:0008033
GO:0050660
 LCP DIMA
CTP_transf_1 Cytidylyltransferase family PF01148 IPR000374
GO:0016020
GO:0016772
 LCP DIMA
Pept_tRNA_hydro Peptidyl-tRNA hydrolase PF01195 IPR001328
GO:0004045
GO:0006412
 LCP DIMA
Ribosomal_L17 Ribosomal protein L17 PF01196 IPR000456
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
Mur_ligase Mur ligase family, catalytic domain PF01225 IPR000713
GO:0005524
GO:0009058
 LCP DIMA
Ribosomal_L19 Ribosomal protein L19 PF01245 IPR001857
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
Ribosomal_S6 Ribosomal protein S6 PF01250 IPR000529
GO:0003735
GO:0005840
GO:0006412
GO:0019843
 LCP DIMA
Peptidase_A8 Signal peptidase (SPase) II PF01252 IPR001872
GO:0004190
GO:0006508
GO:0016020
 LCP DIMA
Ribosomal_L9_N Ribosomal protein L9, N-terminal domain PF01281 IPR020070
LCP DIMA
Ribosomal_L15 Ribosomal protein L15 amino terminal region PF01305
LCP DIMA
Pep_deformylase Polypeptide deformylase PF01327 IPR000181
GO:0005506
GO:0006412
GO:0042586
 LCP DIMA
Peptidase_M41 Peptidase family M41 PF01434 IPR000642
GO:0004222
GO:0005524
GO:0006508
 LCP DIMA
LysM LysM domain PF01476 IPR018392
GO:0016998
 LCP DIMA
Acyltransferase Acyltransferase PF01553 IPR002123
GO:0008152
GO:0008415
 LCP DIMA
Ribosomal_L35p Ribosomal protein L35 PF01632 IPR021137
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
Ribosomal_S20p Ribosomal protein S20 PF01649 IPR002583
GO:0003723
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
DNA_ligase_aden NAD-dependent DNA ligase adenylation domain PF01653 IPR013839
GO:0003911
 LCP DIMA
SmpB SmpB protein PF01668 IPR000037
GO:0003723
GO:0006412
 LCP DIMA
DUF28 Domain of unknown function DUF28 PF01709 IPR002876
LCP DIMA
IPPT IPP transferase PF01715 IPR002627
GO:0004811
GO:0005524
GO:0008033
 LCP DIMA
PolyA_pol Poly A polymerase head domain PF01743 IPR002646
GO:0003723
GO:0006396
GO:0016779
 LCP DIMA
tRNA_m1G_MT tRNA (Guanine-1)-methyltransferase PF01746 IPR016009
LCP DIMA
RRF Ribosome recycling factor PF01765 IPR002661
GO:0006412
 LCP DIMA
RimM RimM N-terminal domain PF01782 IPR002676
GO:0006364
 LCP DIMA
LGT Prolipoprotein diacylglyceryl transferase PF01790 IPR001640
GO:0009249
GO:0016020
GO:0016757
GO:0042158
 LCP DIMA
Methyltransf_5 MraW methylase family PF01795 IPR002903
GO:0008168
 LCP DIMA
zf-CHC2 CHC2 zinc finger PF01807 IPR002694
GO:0003677
GO:0003896
GO:0006260
GO:0008270
 LCP DIMA
60KD_IMP 60Kd inner membrane protein PF02096 IPR001708
GO:0016021
GO:0051205
 LCP DIMA
Cytidylate_kin Cytidylate kinase PF02224 IPR011994
GO:0004127
GO:0005524
GO:0006139
 LCP DIMA
NusG Transcription termination factor nusG PF02357 IPR006645
GO:0003711
GO:0032968
 LCP DIMA
UPF0079 Uncharacterised P-loop hydrolase UPF0079 PF02367 IPR003442
LCP DIMA
Methyltransf_4 Putative methyltransferase PF02390 IPR003358
GO:0006400
GO:0008176
 LCP DIMA
DUF143 Domain of unknown function DUF143 PF02410 IPR004394
LCP DIMA
GidB Glucose inhibited division protein PF02527 IPR003682
GO:0005737
GO:0006364
GO:0008649
 LCP DIMA
DUF149 Uncharacterised BCR, YbaB family COG0718 PF02575 IPR004401
LCP DIMA
DNA_pol3_beta_2 DNA polymerase III beta subunit, central domain PF02767 IPR022637
GO:0003677
GO:0003887
GO:0006260
GO:0008408
GO:0009360
 LCP DIMA
DNA_pol3_beta_3 DNA polymerase III beta subunit, C-terminal domain PF02768 IPR022635
GO:0003677
GO:0003887
GO:0006260
GO:0008408
GO:0009360
 LCP DIMA
MurB_C UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain PF02873 IPR011601
GO:0008762
GO:0009252
GO:0055114
 LCP DIMA
Formyl_trans_C Formyl transferase, C-terminal domain PF02911 IPR005793
GO:0009058
GO:0016742
 LCP DIMA
Phe_tRNA-synt_N Aminoacyl tRNA synthetase class II, N-terminal domain PF02912 IPR004188
GO:0000166
GO:0004826
GO:0005524
GO:0005737
GO:0006412
GO:0006432
 LCP DIMA
Glyco_transf_28 Glycosyltransferase family 28 N-terminal domain PF03033 IPR004276
GO:0005975
GO:0016758
GO:0030259
 LCP DIMA
tRNA_Me_trans tRNA methyl transferase PF03054
GO:0005737
GO:0008033
GO:0016740
 LCP DIMA
RNA_pol_A_CTD Bacterial RNA polymerase, alpha chain C terminal domain PF03118 IPR011260
GO:0003677
GO:0003899
GO:0006350
 LCP DIMA
DNA_ligase_OB NAD-dependent DNA ligase OB-fold domain PF03120 IPR004150
GO:0003911
GO:0006260
GO:0006281
 LCP DIMA
TRCF TRCF domain PF03461 IPR005118
GO:0003684
GO:0004386
GO:0005524
GO:0006281
 LCP DIMA
PCRF PCRF domain PF03462 IPR005139
GO:0005737
GO:0006415
GO:0016149
 LCP DIMA
CorC_HlyC Transporter associated domain PF03471 IPR005170
LCP DIMA
Cons_hypoth95 Conserved hypothetical protein 95 PF03602 IPR004398
GO:0008168
GO:0031167
 LCP DIMA
UPF0081 Uncharacterised protein family (UPF0081) PF03652 IPR005227
GO:0005737
GO:0006281
GO:0006310
GO:0006974
GO:0016788
 LCP DIMA
PBP_dimer Penicillin-binding Protein dimerisation domain PF03717 IPR005311
GO:0008658
 LCP DIMA
Competence Competence protein PF03772 IPR004477
LCP DIMA
DnaB_C DnaB-like helicase C terminal domain PF03796 IPR007694
GO:0003678
GO:0005524
GO:0006260
 LCP DIMA
SecG Preprotein translocase SecG subunit PF03840 IPR004692
GO:0009306
GO:0015450
GO:0016021
 LCP DIMA



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