Pfam ID Description Accession Interpro ID GO ID
RNA_pol_Rpb1_1 RNA polymerase Rpb1, domain 1 PF04997 IPR007080
GO:0003677
GO:0003899
GO:0006350



RNA_pol_Rpb1_1 forms interactions with

Pfam ID Description Accession Interpro ID GO ID Notes Source
Sigma70_r1_2 Sigma-70 factor, region 1.2 PF00140 IPR009042
GO:0003677
GO:0003700
GO:0006352
GO:0006355
GO:0016987
PDB IPFAM 3DID
RNA_pol_Rpb2_6 RNA polymerase Rpb2, domain 6 PF00562 IPR007120
GO:0003677
GO:0003899
GO:0006350
PDB IPFAM 3DID ME GPE
RNA_pol_Rpb1_2 RNA polymerase Rpb1, domain 2 PF00623 IPR000722
GO:0003677
GO:0003899
GO:0006350
PDB IPFAM 3DID ME DIPD
RNA_pol_Rpb5_C RNA polymerase Rpb5, C-terminal domain PF01191 IPR000783
GO:0003677
GO:0003899
GO:0006350
PDB IPFAM GPE DIPD
RNA_pol_Rpb6 RNA polymerase Rpb6 PF01192 IPR006110
GO:0003677
GO:0003899
GO:0006351
PDB IPFAM GPE DIPD
RNA_pol_Rpb5_N RNA polymerase Rpb5, N-terminal domain PF03871 IPR005571
GO:0003677
GO:0003899
GO:0005634
GO:0006350
PDB IPFAM GPE DIPD
RNA_pol_Rpb4 RNA polymerase Rpb4 PF03874 IPR005574
GO:0003899
GO:0006350
PDB 3DID
Sigma70_r3 Sigma-70 region 3 PF04539 IPR007624
GO:0003677
GO:0003700
GO:0006352
GO:0006355
GO:0016987
PDB IPFAM 3DID GPE
Sigma70_r2 Sigma-70 region 2 PF04542 IPR007627
GO:0003677
GO:0003700
GO:0006352
GO:0006355
GO:0016987
PDB IPFAM 3DID GPE
Sigma70_r4 Sigma-70, region 4 PF04545 IPR007630
GO:0003677
GO:0003700
GO:0006352
GO:0006355
GO:0016987
PDB IPFAM 3DID GPE
Sigma70_ner Sigma-70, non-essential region PF04546 IPR007631
GO:0003677
GO:0003700
GO:0006352
GO:0006355
GO:0016987
PDB 3DID
RNA_pol_Rpb2_7 RNA polymerase Rpb2, domain 7 PF04560 IPR007641
GO:0003677
GO:0003899
GO:0006350
PDB IPFAM 3DID ME GPE
RNA_pol_Rpb1_3 RNA polymerase Rpb1, domain 3 PF04983 IPR007066
GO:0003677
GO:0003899
GO:0006350
PDB 3DID ME FUSION
RNA_pol_Rpb1_1 RNA polymerase Rpb1, domain 1 PF04997 IPR007080
GO:0003677
GO:0003899
GO:0006350
PDB 3DID DIPD
RNA_pol_Rpb1_5 RNA polymerase Rpb1, domain 5 PF04998 IPR007081
GO:0003677
GO:0003899
GO:0006350
PDB IPFAM 3DID ME FUSION
TFIIB_Zn_Ribbon TFIIB zinc-binding PF08271 IPR013137
GO:0008270
GO:0045449
PDB 3DID
RNA_pol_L RNA polymerase Rpb3/Rpb11 dimerisation domain PF01193 IPR011261
GO:0003899
GO:0006350
GO:0046983
HCP RCDP GPE DIPD
RNA_POL_M_15KD RNA polymerases M/15 Kd subunit PF02150 IPR001529
GO:0003677
GO:0003899
GO:0006350
HCP RCDP GPE DIPD
RNA_pol_Rpb8 RNA polymerase Rpb8 PF03870 IPR005570
GO:0006350
HCP GPE DIPD
RNA_pol_Rpb2_2 RNA polymerase Rpb2, domain 2 PF04561 IPR007642
GO:0003677
GO:0003899
GO:0006350
HCP ME GPE
RNA_pol_Rpb2_1 RNA polymerase beta subunit PF04563 IPR007644
GO:0003677
GO:0003899
GO:0006350
HCP ME GPE DIPD
RNA_pol_Rpb2_3 RNA polymerase Rpb2, domain 3 PF04565 IPR007645
GO:0003677
GO:0003899
GO:0006350
HCP ME GPE
RNA_pol_Rpb1_6 RNA polymerase Rpb1, domain 6 PF04992 IPR007075
GO:0003677
GO:0003899
GO:0006350
HCP ME
RNA_pol_Rpb1_4 RNA polymerase Rpb1, domain 4 PF05000 IPR007083
GO:0003677
GO:0003899
GO:0006350
HCP ME FUSION
WW WW domain PF00397 IPR001202
GO:0005515
MCP PVALUE DIPD
RNA_pol_A_bac RNA polymerase Rpb3/RpoA insert domain PF01000 IPR011262
GO:0003899
GO:0006350
GO:0046983
MCP GPE
TFIIS_C Transcription factor S-II (TFIIS) PF01096 IPR001222
GO:0003676
GO:0008270
GO:0030528
GO:0045449
MCP GPE DIPD
F_bP_aldolase Fructose-bisphosphate aldolase class-II PF01116 IPR000771
GO:0004332
GO:0006096
GO:0008270
MCP RCDP DIPD
RNA_pol_N RNA polymerases N / 8 kDa subunit PF01194 IPR000268
GO:0003677
GO:0003899
GO:0006351
MCP GPE DIPD
RNA_pol_Rpb7_N RNA polymerase Rpb7-like, N-terminal domain PF03876 IPR005576
GO:0003899
GO:0006350
MCP DIPD
RNA_pol_Rpb2_4 RNA polymerase Rpb2, domain 4 PF04566 IPR007646
GO:0003677
GO:0003899
GO:0006350
MCP DIPD
RNA_pol_Rpb2_5 RNA polymerase Rpb2, domain 5 PF04567 IPR007647
GO:0003677
GO:0003899
GO:0006350
MCP GPE
Histone Core histone H2A/H2B/H3/H4 PF00125 IPR007125
GO:0003677
LCP RCDP
Helicase_C Helicase conserved C-terminal domain PF00271 IPR001650
GO:0003676
GO:0004386
GO:0005524
LCP GPE
WD40 WD domain, G-beta repeat PF00400 IPR019781
LCP RCDP
S1 S1 RNA binding domain PF00575 IPR003029
GO:0003723
LCP GPE
PCNA_N Proliferating cell nuclear antigen, N-terminal domain PF00705 IPR022648
GO:0003677
GO:0006275
GO:0030337
GO:0043626
LCP DIPD
PUF Pumilio-family RNA binding repeat PF00806 IPR001313
GO:0003723
LCP PVALUE
PCNA_C Proliferating cell nuclear antigen, C-terminal domain PF02747 IPR022649
GO:0003677
GO:0006275
GO:0030337
GO:0043626
LCP DIPD




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