RNA_pol_Rpb1_2

• Pfam ID: RNA_pol_Rpb1_2
• Description: RNA polymerase Rpb1, domain 2
• Accession: PF00623
• Interpro ID: IPR000722
• GO ID:

  GO:0003677

  GO:0003899

  GO:0006350

RNA_pol_Rpb1_2 forms interactions with

Pfam ID	Description	Accession	Interpro ID	GO ID	Notes	Source
RNA_pol_Rpb2_6	RNA polymerase Rpb2, domain 6	PF00562	IPR007120	GO:0003677 GO:0003899 GO:0006350
TFIIS_C	Transcription factor S-II (TFIIS)	PF01096	IPR001222	GO:0003676 GO:0008270 GO:0030528 GO:0045449
RNA_pol_Rpb6	RNA polymerase Rpb6	PF01192	IPR006110	GO:0003677 GO:0003899 GO:0006351
RNA_pol_L	RNA polymerase Rpb3/Rpb11 dimerisation domain	PF01193	IPR011261	GO:0003899 GO:0006350 GO:0046983
RNA_pol_A_CTD	Bacterial RNA polymerase, alpha chain C terminal domain	PF03118	IPR011260	GO:0003677 GO:0003899 GO:0006350
RNA_pol_Rpb7_N	RNA polymerase Rpb7-like, N-terminal domain	PF03876	IPR005576	GO:0003899 GO:0006350
Sigma70_r3	Sigma-70 region 3	PF04539	IPR007624	GO:0003677 GO:0003700 GO:0006352 GO:0006355 GO:0016987
RNA_pol_Rpb2_7	RNA polymerase Rpb2, domain 7	PF04560	IPR007641	GO:0003677 GO:0003899 GO:0006350
RNA_pol_Rpb1_3	RNA polymerase Rpb1, domain 3	PF04983	IPR007066	GO:0003677 GO:0003899 GO:0006350
RNA_pol_Rpb1_1	RNA polymerase Rpb1, domain 1	PF04997	IPR007080	GO:0003677 GO:0003899 GO:0006350
RNA_pol_Rpb1_5	RNA polymerase Rpb1, domain 5	PF04998	IPR007081	GO:0003677 GO:0003899 GO:0006350
TFIIB_Zn_Ribbon	TFIIB zinc-binding	PF08271	IPR013137	GO:0008270 GO:0045449
RNA_pol_Rpb5_C	RNA polymerase Rpb5, C-terminal domain	PF01191	IPR000783	GO:0003677 GO:0003899 GO:0006350
RNA_POL_M_15KD	RNA polymerases M/15 Kd subunit	PF02150	IPR001529	GO:0003677 GO:0003899 GO:0006350
RNA_pol_Rpb8	RNA polymerase Rpb8	PF03870	IPR005570	GO:0006350
RNA_pol_Rpb2_2	RNA polymerase Rpb2, domain 2	PF04561	IPR007642	GO:0003677 GO:0003899 GO:0006350
RNA_pol_Rpb2_1	RNA polymerase beta subunit	PF04563	IPR007644	GO:0003677 GO:0003899 GO:0006350
RNA_pol_Rpb2_3	RNA polymerase Rpb2, domain 3	PF04565	IPR007645	GO:0003677 GO:0003899 GO:0006350
RNA_pol_Rpb1_6	RNA polymerase Rpb1, domain 6	PF04992	IPR007075	GO:0003677 GO:0003899 GO:0006350
RNA_pol_Rpb1_4	RNA polymerase Rpb1, domain 4	PF05000	IPR007083	GO:0003677 GO:0003899 GO:0006350
RRM_1	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	PF00076	IPR000504	GO:0003676
WW	WW domain	PF00397	IPR001202	GO:0005515
RNA_pol_A_bac	RNA polymerase Rpb3/RpoA insert domain	PF01000	IPR011262	GO:0003899 GO:0006350 GO:0046983
RNA_pol_N	RNA polymerases N / 8 kDa subunit	PF01194	IPR000268	GO:0003677 GO:0003899 GO:0006351
RNA_pol_Rpb5_N	RNA polymerase Rpb5, N-terminal domain	PF03871	IPR005571	GO:0003677 GO:0003899 GO:0005634 GO:0006350
RNA_pol_Rpb2_4	RNA polymerase Rpb2, domain 4	PF04566	IPR007646	GO:0003677 GO:0003899 GO:0006350
RNA_pol_Rpb2_5	RNA polymerase Rpb2, domain 5	PF04567	IPR007647	GO:0003677 GO:0003899 GO:0006350
AAA	ATPase family associated with various cellular activities (AAA)	PF00004	IPR003959	GO:0005524
Histone	Core histone H2A/H2B/H3/H4	PF00125	IPR007125	GO:0003677
ubiquitin	Ubiquitin family	PF00240	IPR000626
Myb_DNA-binding	Myb-like DNA-binding domain	PF00249	IPR014778
Helicase_C	Helicase conserved C-terminal domain	PF00271	IPR001650	GO:0003676 GO:0004386 GO:0005524
WD40	WD domain, G-beta repeat	PF00400	IPR019781
TPR_1	Tetratricopeptide repeat	PF00515	IPR001440
ZZ	Zinc finger, ZZ type	PF00569	IPR000433	GO:0008270
S1	S1 RNA binding domain	PF00575	IPR003029	GO:0003723
UBA	UBA/TS-N domain	PF00627	IPR000449
HECT	HECT-domain (ubiquitin-transferase)	PF00632	IPR000569	GO:0005622 GO:0006464 GO:0016881
PCNA_N	Proliferating cell nuclear antigen, N-terminal domain	PF00705	IPR022648	GO:0003677 GO:0006275 GO:0030337 GO:0043626
PUF	Pumilio-family RNA binding repeat	PF00806	IPR001313	GO:0003723
F_bP_aldolase	Fructose-bisphosphate aldolase class-II	PF01116	IPR000771	GO:0004332 GO:0006096 GO:0008270
TFIIE_beta	TFIIE beta subunit core domain	PF02186	IPR003166	GO:0003702 GO:0005673 GO:0006367
PCNA_C	Proliferating cell nuclear antigen, C-terminal domain	PF02747	IPR022649	GO:0003677 GO:0006275 GO:0030337 GO:0043626
TFIID_30kDa	Transcription initiation factor TFIID 23-30kDa subunit	PF03540	IPR003923	GO:0003702 GO:0005634 GO:0006352
Sigma70_r2	Sigma-70 region 2	PF04542	IPR007627	GO:0003677 GO:0003700 GO:0006352 GO:0006355 GO:0016987
Sigma70_r4	Sigma-70, region 4	PF04545	IPR007630	GO:0003677 GO:0003700 GO:0006352 GO:0006355 GO:0016987