Pfam ID Description Accession Interpro ID GO ID
AAA ATPase family associated with various cellular activities (AAA) PF00004 IPR003959
GO:0005524



AAA forms interactions with

Pfam ID Description Accession Interpro ID GO ID Notes Source
AAA ATPase family associated with various cellular activities (AAA) PF00004 IPR003959
GO:0005524
 PDB IPFAM 3DID PVALUE GPE DIPD RDFF KGIDDI
Proteasome Proteasome A-type and B-type PF00227 IPR001353
GO:0004298
GO:0005839
GO:0051603
 PDB 3DID GPE RDFF INSITE DOMAINGA
PCNA_N Proliferating cell nuclear antigen, N-terminal domain PF00705 IPR022648
GO:0003677
GO:0006275
GO:0030337
GO:0043626
 PDB 3DID RCDP DIPD RDFF KGIDDI
Peptidase_M41 Peptidase family M41 PF01434 IPR000642
GO:0004222
GO:0005524
GO:0006508
 PDB IPFAM 3DID ME
CDC48_N Cell division protein 48 (CDC48), N-terminal domain PF02359 IPR003338
GO:0005524
 PDB IPFAM 3DID ME
PCNA_C Proliferating cell nuclear antigen, C-terminal domain PF02747 IPR022649
GO:0003677
GO:0006275
GO:0030337
GO:0043626
 PDB 3DID DIPD RDFF KGIDDI
Clp_N Clp amino terminal domain PF02861 IPR004176
GO:0005515
GO:0019538
 PDB IPFAM 3DID ME FUSION GPE
Lon_C Lon protease (S16) C-terminal proteolytic domain PF05362 IPR008269
GO:0004176
GO:0004252
GO:0006508
 PDB IPFAM 3DID ME FUSION
RuvB_C Holliday junction DNA helicase ruvB C-terminus PF05491 IPR008823
GO:0003677
GO:0006281
GO:0006310
GO:0009378
 PDB IPFAM ME
RuvB_N Holliday junction DNA helicase ruvB N-terminus PF05496 IPR008824
GO:0006281
GO:0006310
GO:0009378
 PDB IPFAM ME
DNA_pol3_delta DNA polymerase III, delta subunit PF06144 IPR010372
GO:0003677
GO:0003887
GO:0006260
GO:0009360
 PDB IPFAM 3DID
FtsH_ext FtsH Extracellular PF06480 IPR011546
GO:0004222
GO:0005524
GO:0008270
GO:0016021
 PDB IPFAM ME DIPD
RuvA_C RuvA, C-terminal domain PF07499 IPR011114
GO:0005524
GO:0006281
GO:0006310
GO:0009378
GO:0009379
 PDB IPFAM
AAA_2 ATPase family associated with various cellular activities (AAA) PF07724 IPR013093
GO:0005524
 PDB IPFAM 3DID
RFC1 Replication factor RFC1 C terminal domain PF08519 IPR013725
GO:0003689
GO:0005524
GO:0005663
GO:0006260
 PDB 3DID
Rep_fac_C Replication factor C PF08542 IPR013748
GO:0003689
GO:0005524
GO:0005663
GO:0006260
 PDB IPFAM 3DID RCDP PVALUE DIPD INSITE
DNApol3-delta_C DNA polymerase III, delta subunit, C terminal PF09115 IPR015199
GO:0003677
GO:0003887
GO:0006260
GO:0009360
 PDB IPFAM
Vps4_C Vps4 C terminal oligomerisation domain PF09336 IPR015415
PDB IPFAM 3DID
ClpB_D2-small C-terminal, D2-small domain, of ClpB protein PF10431 IPR019489
PDB 3DID
Ank Ankyrin repeat PF00023 IPR002110
HCP ME RDFF DOMAINGA
ubiquitin Ubiquitin family PF00240 IPR000626
HCP ME RCDP RDFF
Bromodomain Bromodomain PF00439 IPR001487
HCP ME FUSION
UBA UBA/TS-N domain PF00627 IPR000449
HCP ME PVALUE RDFF
Mov34 Mov34/MPN/PAD-1 family PF01398 IPR000555
HCP ME PE GPE RDFF DOMAINGA
PCI PCI domain PF01399 IPR000717
HCP PE GPE RDFF INSITE DOMAINGA
UVR UvrB/uvrC motif PF02151 IPR001943
GO:0003677
GO:0004518
GO:0006289
 HCP ME FUSION
CDC48_2 Cell division protein 48 (CDC48), domain 2 PF02933 IPR004201
GO:0005524
 HCP ME
TIP49 TIP49 C-terminus PF06068 IPR010339
GO:0003678
GO:0005524
 HCP RCDP FUSION GPE DIPD
Actin Actin PF00022 IPR004000
GO:0005515
 MCP PE RDFF
Histone Core histone H2A/H2B/H3/H4 PF00125 IPR007125
GO:0003677
 MCP PE INSITE
WD40 WD domain, G-beta repeat PF00400 IPR019781
MCP GPE RDFF
UCH Ubiquitin carboxyl-terminal hydrolase PF00443 IPR001394
GO:0004221
GO:0006511
 MCP RDFF DOMAINGA
HMG_box HMG (high mobility group) box PF00505 IPR000910
GO:0003677
GO:0005634
 MCP RCDP DIPD
Arm Armadillo/beta-catenin-like repeat PF00514 IPR000225
MCP DIPD RDFF
Peptidase_M24 metallopeptidase family M24 PF00557 IPR000994
GO:0009987
 MCP RCDP RDFF
tRNA-synt_2b tRNA synthetase class II core domain (G, H, P, S and T) PF00587 IPR002314
GO:0000166
GO:0004812
GO:0005524
GO:0005737
GO:0006412
GO:0006418
 MCP PE RDFF
F-box F-box domain PF00646 IPR001810
MCP PE RDFF
CK_II_beta Casein kinase II regulatory subunit PF01214 IPR000704
GO:0005956
GO:0019887
 MCP PE DIPD RDFF
IBB Importin beta binding domain PF01749 IPR002652
GO:0005634
GO:0005643
GO:0005737
GO:0006606
GO:0006886
GO:0008565
 MCP RCDP DIPD
PC_rep Proteasome/cyclosome repeat PF01851 IPR002015
MCP RDFF DOMAINGA
AT_hook AT hook motif PF02178 IPR017956
GO:0003677
 MCP FUSION RDFF
Rad17 Rad17 cell cycle checkpoint protein PF03215
MCP PVALUE GPE
GTP_EFTU Elongation factor Tu GTP binding domain PF00009 IPR000795
GO:0003924
GO:0005525
 LCP PVALUE
HLH Helix-loop-helix DNA-binding domain PF00010 IPR001092
GO:0030528
GO:0045449
 LCP RDFF
SH3_1 SH3 domain PF00018 IPR001452
LCP RDFF
efhand EF hand PF00036 IPR018248
LCP DOMAINGA
GST_C Glutathione S-transferase, C-terminal domain PF00043 IPR004046
LCP PE
Ldh_1_N lactate/malate dehydrogenase, NAD binding domain PF00056 IPR001236
GO:0016491
GO:0055114
 LCP RDFF
Pkinase Protein kinase domain PF00069 IPR017442
GO:0004672
GO:0005524
GO:0006468
 LCP RDFF
Pyr_redox Pyridine nucleotide-disulphide oxidoreductase PF00070 IPR001327
GO:0016491
GO:0050660
GO:0055114
 LCP RDFF
Ras Ras family PF00071 IPR013753
LCP RDFF
RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) PF00076 IPR000504
GO:0003676
 LCP RDFF
GATase Glutamine amidotransferase class-I PF00117 IPR000991
GO:0003824
 LCP RDFF
Cpn60_TCP1 TCP-1/cpn60 chaperonin family PF00118 IPR002423
GO:0005515
GO:0005524
GO:0044267
 LCP PVALUE
DNA_pol_B DNA polymerase family B PF00136 IPR006134
GO:0000166
GO:0003677
GO:0003887
GO:0006260
 LCP RDFF
peroxidase Peroxidase PF00141 IPR002016
GO:0004601
GO:0006979
GO:0020037
GO:0055114
 LCP RDFF
Metallophos Calcineurin-like phosphoesterase PF00149 IPR004843
GO:0016787
 LCP RDFF
Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD PF00160 IPR002130
GO:0003755
GO:0006457
 LCP DIPD
Zn_clus Fungal Zn(2)-Cys(6) binuclear cluster domain PF00172 IPR001138
GO:0003700
GO:0005634
GO:0006355
GO:0008270
 LCP RDFF
Iso_dh Isocitrate/isopropylmalate dehydrogenase PF00180 IPR001804
GO:0000287
GO:0016616
GO:0051287
GO:0055114
 LCP PE
DnaJ DnaJ domain PF00226 IPR001623
GO:0031072
 LCP RDFF
ATP-synt ATP synthase PF00231 IPR000131
GO:0015986
GO:0045261
GO:0046933
GO:0046961
 LCP DIPD
Ribosomal_L22 Ribosomal protein L22p/L17e PF00237 IPR001063
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DPEA PE
DEAD DEAD/DEAH box helicase PF00270 IPR011545
GO:0003676
GO:0005524
GO:0008026
 LCP RDFF
Helicase_C Helicase conserved C-terminal domain PF00271 IPR001650
GO:0003676
GO:0004386
GO:0005524
 LCP RDFF
Pyridoxal_deC Pyridoxal-dependent decarboxylase conserved domain PF00282 IPR002129
GO:0016831
GO:0019752
GO:0030170
 LCP RCDP
CPSase_L_chain Carbamoyl-phosphate synthase L chain, N-terminal domain PF00289 IPR005481
GO:0003824
GO:0008152
 LCP RDFF
GATA GATA zinc finger PF00320 IPR000679
GO:0003700
GO:0006355
GO:0008270
GO:0043565
 LCP RDFF
Aconitase Aconitase family (aconitate hydratase) PF00330 IPR001030
GO:0008152
 LCP RCDP
TBP Transcription factor TFIID (or TATA-binding protein, TBP) PF00352 IPR000814
GO:0003677
GO:0003702
GO:0006355
GO:0006367
 LCP RDFF
2-Hacid_dh D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain PF00389 IPR006139
GO:0008152
GO:0016616
GO:0051287
 LCP PVALUE
PGM_PMM_IV Phosphoglucomutase/phosphomannomutase, C-terminal domain PF00408 IPR005843
GO:0005975
GO:0016868
 LCP RDFF
SHMT Serine hydroxymethyltransferase PF00464 IPR001085
GO:0004372
GO:0006544
GO:0006563
 LCP RDFF
KOW KOW motif PF00467 IPR005824
LCP PE
MCM MCM2/3/5 family PF00493 IPR001208
GO:0003677
GO:0005524
GO:0006260
 LCP DOMAINGA
SQS_PSY Squalene/phytoene synthase PF00494 IPR002060
GO:0009058
GO:0016740
 LCP KGIDDI
FHA FHA domain PF00498 IPR000253
LCP RDFF
TPR_1 Tetratricopeptide repeat PF00515 IPR001440
LCP RDFF
DNA_topoisoIV DNA gyrase/topoisomerase IV, subunit A PF00521 IPR002205
GO:0003677
GO:0003918
GO:0005524
GO:0005694
GO:0006265
 LCP RCDP
BRCT BRCA1 C Terminus (BRCT) domain PF00533 IPR001357
GO:0005622
 LCP FUSION
AIRS AIR synthase related protein, N-terminal domain PF00586 IPR000728
GO:0003824
 LCP RDFF
PDZ PDZ domain (Also known as DHR or GLGF) PF00595 IPR001478
GO:0005515
 LCP RDFF
DEP Domain found in Dishevelled, Egl-10, and Pleckstrin PF00610 IPR000591
GO:0023034
 LCP RDFF
FCH Fes/CIP4 homology domain PF00611 IPR001060
LCP RDFF
RhoGEF RhoGEF domain PF00621 IPR000219
GO:0005089
GO:0005622
GO:0035023
 LCP RDFF
RNA_pol_Rpb1_2 RNA polymerase Rpb1, domain 2 PF00623 IPR000722
GO:0003677
GO:0003899
GO:0006350
 LCP RDFF
HHH Helix-hairpin-helix motif PF00633 IPR000445
GO:0003677
 LCP PE
HhH-GPD HhH-GPD superfamily base excision DNA repair protein PF00730 IPR003265
GO:0006284
 LCP RDFF
Septin Septin PF00735 IPR000038
GO:0005525
GO:0007049
 LCP RDFF
CNH CNH domain PF00780 IPR001180
GO:0005083
 LCP RDFF
RA Ras association (RalGDS/AF-6) domain PF00788 IPR000159
GO:0007165
 LCP RDFF
UBX UBX domain PF00789 IPR001012
LCP RDFF
PUF Pumilio-family RNA binding repeat PF00806 IPR001313
GO:0003723
 LCP PVALUE
Ribosomal_L18e Eukaryotic ribosomal protein L18 PF00828 IPR021131
LCP DPEA PE
IF-2B Initiation factor 2 subunit family PF01008 IPR000649
GO:0044237
 LCP RDFF
GARS_A Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain PF01071 IPR020561
LCP RDFF
GIDA Glucose inhibited division protein A PF01134 IPR002218
GO:0008033
GO:0050660
 LCP DIPD
Oxysterol_BP Oxysterol-binding protein PF01237 IPR000648
GO:0008202
 LCP RDFF
tRNA_anti OB-fold nucleic acid binding domain PF01336 IPR004365
GO:0003676
 LCP PE
LSM LSM domain PF01423 IPR001163
LCP RDFF
BAH BAH domain PF01426 IPR001025
GO:0003677
 LCP FUSION
Peptidase_M3 Peptidase family M3 PF01432 IPR001567
GO:0004222
GO:0006508
 LCP PE
MutS_I MutS domain I PF01624 IPR007695
GO:0005524
GO:0006298
GO:0030983
 LCP DIPD
Macro Macro domain PF01661 IPR002589
LCP FUSION
DHQ_synthase 3-dehydroquinate synthase PF01761 IPR002658
GO:0003856
GO:0009073
 LCP DIPD
MGS MGS-like domain PF02142 IPR011607
LCP RDFF
zf-UBR Putative zinc finger in N-recognin (UBR box) PF02207 IPR003126
GO:0004842
GO:0008270
 LCP RDFF
UPF0079 Uncharacterised P-loop hydrolase UPF0079 PF02367 IPR003442
LCP FUSION
Syja_N SacI homology domain PF02383 IPR002013
LCP RDFF
AIRS_C AIR synthase related protein, C-terminal domain PF02769 IPR010918
LCP RDFF
CPSase_L_D2 Carbamoyl-phosphate synthase L chain, ATP binding domain PF02786 IPR005479
GO:0003824
GO:0005524
GO:0008152
 LCP RDFF
CPSase_L_D3 Carbamoyl-phosphate synthetase large chain, oligomerisation domain PF02787 IPR005480
GO:0004086
GO:0006807
 LCP RDFF
GST_N Glutathione S-transferase, N-terminal domain PF02798 IPR004045
LCP GPE
GARS_C Phosphoribosylglycinamide synthetase, C domain PF02843 IPR020560
GO:0004637
GO:0009113
 LCP RDFF
GARS_N Phosphoribosylglycinamide synthetase, N domain PF02844 IPR020562
GO:0004637
GO:0009113
 LCP RDFF
Pyr_redox_dim Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain PF02852 IPR004099
GO:0005737
GO:0016491
GO:0045454
GO:0050660
GO:0055114
 LCP RDFF
Ldh_1_C lactate/malate dehydrogenase, alpha/beta C-terminal domain PF02866 IPR022383
LCP RDFF
PGM_PMM_II Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PF02879 IPR005845
GO:0005975
GO:0016868
 LCP RDFF
Sec63 Sec63 Brl domain PF02889 IPR004179
LCP RDFF
tRNA-synt_1c_C tRNA synthetases class I (E and Q), anti-codon binding domain PF03950 IPR020059
GO:0000166
GO:0004812
GO:0005524
GO:0005737
GO:0006412
GO:0006418
 LCP DIPD
APG12 Ubiquitin-like autophagy protein Apg12 PF04110 IPR007242
GO:0000045
GO:0005737
 LCP PE
MIT MIT (microtubule interacting and transport) domain PF04212 IPR007330
LCP FUSION
DSS1_SEM1 DSS1/SEM1 family PF05160 IPR007834
LCP INSITE
Bystin Bystin PF05291 IPR007955
LCP DIPD
UMP1 Proteasome maturation factor UMP1 PF05348 IPR008012
LCP DOMAINGA
CTP_synth_N CTP synthase N-terminus PF06418 IPR017456
GO:0003883
GO:0006221
 LCP GPE
Rad51 Rad51 PF08423 IPR013632
LCP PVALUE



Terms of use
Copyright © 2007, Raghavachari et al.
Comments or questions on the site? Send an email to jothi AT mail.nih.gov