Pfam ID
Description
Accession
Interpro ID
GO ID
AT_hook
AT hook motif
PF02178
IPR017956
GO:0003677
AT_hook
forms interactions with
Pfam ID
Description
Accession
Interpro ID
GO ID
Notes
Source
Homeobox
Homeobox domain
PF00046
IPR001356
GO:0003700
GO:0006355
GO:0043565
AAA
ATPase family associated with various cellular activities (AAA)
PF00004
IPR003959
GO:0005524
Cytochrom_C
Cytochrome c
PF00034
IPR003088
GO:0005506
GO:0009055
GO:0020037
Bromodomain
Bromodomain
PF00439
IPR001487
IQ
IQ calmodulin-binding motif
PF00612
IPR000048
HAT
HAT (Half-A-TPR) repeat
PF02184
IPR003107
GO:0005622
GO:0006396
Tektin
Tektin family
PF03148
IPR000435
GO:0000226
GO:0005874
SNF5
SNF5 / SMARCB1 / INI1
PF04855
IPR006939
GO:0000228
GO:0006338
Ank
Ankyrin repeat
PF00023
IPR002110
RRM_1
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
PF00076
IPR000504
GO:0003676
Sugar_tr
Sugar (and other) transporter
PF00083
IPR005828
GO:0005215
GO:0006810
GO:0016021
GO:0055085
Trypsin
Trypsin
PF00089
IPR001254
GO:0004252
GO:0006508
zf-C2H2
Zinc finger, C2H2 type
PF00096
IPR007087
GO:0005622
GO:0008270
Histone
Core histone H2A/H2B/H3/H4
PF00125
IPR007125
GO:0003677
Zn_clus
Fungal Zn(2)-Cys(6) binuclear cluster domain
PF00172
IPR001138
GO:0003700
GO:0005634
GO:0006355
GO:0008270
SNF2_N
SNF2 family N-terminal domain
PF00176
IPR000330
GO:0003677
GO:0005524
Aminotran_3
Aminotransferase class-III
PF00202
IPR005814
GO:0008483
GO:0030170
Peptidase_M14
Zinc carboxypeptidase
PF00246
IPR000834
GO:0004181
GO:0006508
GO:0008270
Helicase_C
Helicase conserved C-terminal domain
PF00271
IPR001650
GO:0003676
GO:0004386
GO:0005524
Chromo
'chromo' (CHRromatin Organisation MOdifier) domain
PF00385
IPR000953
GO:0000785
GO:0003682
GO:0005634
GO:0006333
MCM
MCM2/3/5 family
PF00493
IPR001208
GO:0003677
GO:0005524
GO:0006260
HMG_box
HMG (high mobility group) box
PF00505
IPR000910
GO:0003677
GO:0005634
TPR_1
Tetratricopeptide repeat
PF00515
IPR001440
Linker_histone
linker histone H1 and H5 family
PF00538
IPR005818
GO:0000786
GO:0003677
GO:0005634
GO:0006334
PHD
PHD-finger
PF00628
IPR019787
BTB
BTB/POZ domain
PF00651
IPR013069
GO:0005515
Septin
Septin
PF00735
IPR000038
GO:0005525
GO:0007049
PWWP
PWWP domain
PF00855
IPR000313
SET
SET domain
PF00856
IPR001214
TatD_DNase
TatD related DNase
PF01026
IPR001130
GO:0016888
PBP
Phosphatidylethanolamine-binding protein
PF01161
IPR008914
BAH
BAH domain
PF01426
IPR001025
GO:0003677
MBD
Methyl-CpG binding domain
PF01429
IPR001739
GO:0003677
GO:0005634
zf-CXXC
CXXC zinc finger domain
PF02008
IPR002857
GO:0003677
GO:0008270
CIDE-N
CIDE-N domain
PF02017
IPR003508
GO:0005515
GO:0005622
GO:0006915
DDT
DDT domain
PF02791
IPR004022
ORC2
Origin recognition complex subunit 2
PF04084
IPR007220
GO:0000808
GO:0005634
GO:0006260
Endosulfine
cAMP-regulated phosphoprotein/endosulfine conserved region
PF04667
IPR006760
Pre-SET
Pre-SET motif
PF05033
IPR007728
GO:0005634
GO:0008270
GO:0016568
GO:0018024
FYRN
F/Y-rich N-terminus
PF05964
IPR003888
GO:0003677
GO:0005634
FYRC
F/Y rich C-terminus
PF05965
IPR003889
GO:0003677
GO:0005634
MFAP1_C
Micro-fibrillar-associated protein 1 C-terminus
PF06991
IPR009730
GO:0005576
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Copyright © 2007, Raghavachari et al.
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