Pfam ID Description Accession Interpro ID GO ID
RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) PF00076 IPR000504
GO:0003676



RRM_1 forms interactions with

Pfam ID Description Accession Interpro ID GO ID Notes Source
Pkinase Protein kinase domain PF00069 IPR017442
GO:0004672
GO:0005524
GO:0006468
 PDB 3DID ME FUSION PE GPE RDFF KGIDDI DOMAINGA
RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) PF00076 IPR000504
GO:0003676
 PDB IPFAM 3DID ME PVALUE DPEA PE GPE RDFF KGIDDI INSITE DOMAINGA
LRR_1 Leucine Rich Repeat PF00560 IPR001611
GO:0005515
 PDB IPFAM RDFF
PHD PHD-finger PF00628 IPR019787
PDB 3DID
Vinculin Vinculin family PF01044 IPR006077
GO:0005198
GO:0007155
GO:0015629
 PDB 3DID KGIDDI
Mago_nashi Mago nashi protein PF02792 IPR004023
GO:0005634
 PDB IPFAM 3DID PE
La La domain PF05383 IPR006630
PDB IPFAM 3DID FUSION INSITE
zf-RNPHF RNPHF zinc finger PF08080 IPR012996
PDB IPFAM 3DID
SF3b1 Splicing factor 3B subunit 1 PF08920 IPR015016
PDB IPFAM 3DID
MIF4G_like MIF4G like PF09088 IPR015172
GO:0005515
GO:0016070
 PDB IPFAM 3DID
MIF4G_like_2 MIF4G like PF09090 IPR015174
GO:0005515
GO:0016070
 PDB IPFAM 3DID
Mago-bind Mago binding PF09282 IPR015362
PDB IPFAM 3DID
KH_1 KH domain PF00013 IPR018111
GO:0003723
 HCP ME GPE RDFF
Ank Ankyrin repeat PF00023 IPR002110
HCP ME
Homeobox Homeobox domain PF00046 IPR001356
GO:0003700
GO:0006355
GO:0043565
 HCP ME KGIDDI
zf-C2H2 Zinc finger, C2H2 type PF00096 IPR007087
GO:0005622
GO:0008270
 HCP ME FUSION PE GPE KGIDDI
zf-C4 Zinc finger, C4 type (two domains) PF00105 IPR001628
GO:0003700
GO:0005634
GO:0006355
GO:0008270
GO:0043565
 HCP ME KGIDDI
Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD PF00160 IPR002130
GO:0003755
GO:0006457
 HCP ME PVALUE FUSION RDFF
DEAD DEAD/DEAH box helicase PF00270 IPR011545
GO:0003676
GO:0005524
GO:0008026
 HCP ME RDFF
Helicase_C Helicase conserved C-terminal domain PF00271 IPR001650
GO:0003676
GO:0004386
GO:0005524
 HCP ME RDFF KGIDDI
WD40 WD domain, G-beta repeat PF00400 IPR019781
HCP ME PE GPE RDFF DOMAINGA
UBA UBA/TS-N domain PF00627 IPR000449
HCP ME RDFF
DSPc Dual specificity phosphatase, catalytic domain PF00782 IPR000340
GO:0006470
GO:0008138
 HCP PVALUE PE RDFF INSITE
PUF Pumilio-family RNA binding repeat PF00806 IPR001313
GO:0003723
 HCP ME FUSION RDFF DOMAINGA
ARID ARID/BRIGHT DNA binding domain PF01388 IPR001606
GO:0003677
GO:0005622
 HCP DPEA PE RDFF INSITE
Mov34 Mov34/MPN/PAD-1 family PF01398 IPR000555
HCP ME
LSM LSM domain PF01423 IPR001163
HCP ME PVALUE DPEA PE GPE RDFF INSITE
IF4E Eukaryotic initiation factor 4E PF01652 IPR001040
GO:0003723
GO:0003743
GO:0005737
GO:0006413
 HCP RCDP DPEA PE DIPD RDFF INSITE
eIF-6 eIF-6 family PF01912 IPR002769
GO:0042256
GO:0043022
 HCP DPEA PE RDFF INSITE
tRNA_int_endo tRNA intron endonuclease, catalytic C-terminal domain PF01974 IPR006677
GO:0000213
GO:0006388
 HCP PVALUE DPEA PE RDFF
SAP SAP domain PF02037 IPR003034
GO:0003676
 HCP ME PVALUE
NTF2 Nuclear transport factor 2 (NTF2) domain PF02136 IPR002075
GO:0005622
GO:0006810
 HCP ME FUSION
MIF4G MIF4G domain PF02854 IPR003890
GO:0005515
GO:0016070
 HCP PVALUE PE GPE RDFF INSITE
GTP_EFTU_D3 Elongation factor Tu C-terminal domain PF03143 IPR004160
GO:0005525
 HCP ME
efhand EF hand PF00036 IPR018248
MCP PE DOMAINGA
zf-C3HC4 Zinc finger, C3HC4 type (RING finger) PF00097 IPR018957
MCP PE RDFF
zf-CCHC Zinc knuckle PF00098 IPR001878
GO:0003676
GO:0008270
 MCP FUSION RDFF
Cyclin_N Cyclin, N-terminal domain PF00134 IPR006671
MCP RDFF KGIDDI
Metallophos Calcineurin-like phosphoesterase PF00149 IPR004843
GO:0016787
 MCP RDFF DOMAINGA
SNF2_N SNF2 family N-terminal domain PF00176 IPR000330
GO:0003677
GO:0005524
 MCP RDFF INSITE
Ribosomal_S7 Ribosomal protein S7p/S5e PF00177 IPR000235
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 MCP PVALUE PE
FKBP_C FKBP-type peptidyl-prolyl cis-trans isomerase PF00254 IPR001179
GO:0006457
 MCP PE RDFF INSITE
Chitin_bind_4 Insect cuticle protein PF00379 IPR000618
GO:0042302
 MCP PE GPE
WW WW domain PF00397 IPR001202
GO:0005515
 MCP FUSION PE
Bromodomain Bromodomain PF00439 IPR001487
MCP RDFF KGIDDI
IMPDH IMP dehydrogenase / GMP reductase domain PF00478 IPR001093
GO:0003824
GO:0055114
 MCP GPE RDFF
Pro_CA Carbonic anhydrase PF00484 IPR001765
GO:0004089
GO:0008270
GO:0015976
 MCP DPEA PE INSITE
Arm Armadillo/beta-catenin-like repeat PF00514 IPR000225
MCP PVALUE RDFF
BRCT BRCA1 C Terminus (BRCT) domain PF00533 IPR001357
GO:0005622
 MCP RDFF DOMAINGA
DEP Domain found in Dishevelled, Egl-10, and Pleckstrin PF00610 IPR000591
GO:0023034
 MCP PE RDFF
RNA_pol_Rpb1_2 RNA polymerase Rpb1, domain 2 PF00623 IPR000722
GO:0003677
GO:0003899
GO:0006350
 MCP RDFF KGIDDI
Clathrin Region in Clathrin and VPS PF00637
MCP PE GPE
Ran_BP1 RanBP1 domain PF00638 IPR000156
GO:0046907
 MCP PE RDFF
PABP Poly-adenylate binding protein, unique domain PF00658 IPR002004
GO:0003723
 MCP PVALUE FUSION
Peptidase_M16 Insulinase (Peptidase family M16) PF00675 IPR011765
GO:0004222
GO:0006508
 MCP GPE RDFF
Adap_comp_sub Adaptor complexes medium subunit family PF00928 IPR008968
GO:0005515
GO:0006886
GO:0016192
GO:0030131
 MCP DIPD RDFF
GDI GDP dissociation inhibitor PF00996 IPR018203
MCP PVALUE PE INSITE
F_actin_cap_B F-actin capping protein, beta subunit PF01115 IPR001698
GO:0003779
GO:0005737
GO:0008290
GO:0030036
 MCP PE RDFF INSITE
Ribosomal_L17 Ribosomal protein L17 PF01196 IPR000456
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 MCP DPEA PE RDFF
Ribosomal_L31e Ribosomal protein L31e PF01198 IPR000054
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 MCP PVALUE PE
CK_II_beta Casein kinase II regulatory subunit PF01214 IPR000704
GO:0005956
GO:0019887
 MCP RDFF INSITE
Clat_adaptor_s Clathrin adaptor complex small chain PF01217
MCP PE DIPD
Ribosomal_L7Ae Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PF01248 IPR004038
MCP PVALUE RDFF
SUI1 Translation initiation factor SUI1 PF01253 IPR001950
GO:0003743
GO:0006413
 MCP PE RDFF INSITE
Fibrillarin Fibrillarin PF01269 IPR000692
GO:0003723
GO:0006364
GO:0008033
GO:0008168
 MCP PE RDFF INSITE
G-patch G-patch domain PF01585 IPR000467
GO:0003676
GO:0005622
 MCP FUSION RDFF
BNR BNR/Asp-box repeat PF02012 IPR002860
MCP PE DOMAINGA
W2 eIF4-gamma/eIF5/eIF2-epsilon PF02020 IPR003307
MCP PE GPE RDFF
CBFB_NFYA CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B PF02045 IPR001289
GO:0003700
GO:0005634
GO:0006355
 MCP PE RDFF
TGS TGS domain PF02824 IPR004095
MCP PE RDFF
Pyr_redox_dim Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain PF02852 IPR004099
GO:0005737
GO:0016491
GO:0045454
GO:0050660
GO:0055114
 MCP PVALUE RDFF
HEAT HEAT repeat PF02985 IPR000357
MCP PVALUE DOMAINGA
HGTP_anticodon Anticodon binding domain PF03129 IPR004154
GO:0004812
GO:0005524
GO:0006412
 MCP GPE DIPD
MH1 MH1 domain PF03165 IPR003619
GO:0005622
GO:0006355
 MCP PE KGIDDI
PRA1 PRA1 family protein PF03208 IPR004895
MCP DPEA PE INSITE
RNA_pol_Rpb4 RNA polymerase Rpb4 PF03874 IPR005574
GO:0003899
GO:0006350
 MCP PVALUE PE
PSP PSP PF04046 IPR006568
MCP PE INSITE
P21-Arc ARP2/3 complex ARPC3 (21 kDa) subunit PF04062 IPR007204
GO:0005856
GO:0030833
 MCP PVALUE PE
Brix Brix domain PF04427 IPR007109
MCP DPEA PE INSITE
Endosulfine cAMP-regulated phosphoprotein/endosulfine conserved region PF04667 IPR006760
MCP PE INSITE
Pex24p Integral peroxisomal membrane peroxin PF06398 IPR010482
MCP PE INSITE
AAA ATPase family associated with various cellular activities (AAA) PF00004 IPR003959
GO:0005524
 LCP RDFF
ABC_tran ABC transporter PF00005 IPR003439
GO:0005524
GO:0016887
 LCP RDFF
ATP-synt_ab ATP synthase alpha/beta family, nucleotide-binding domain PF00006 IPR000194
GO:0005524
 LCP KGIDDI
GTP_EFTU Elongation factor Tu GTP binding domain PF00009 IPR000795
GO:0003924
GO:0005525
 LCP RDFF
SH3_1 SH3 domain PF00018 IPR001452
LCP RDFF
cNMP_binding Cyclic nucleotide-binding domain PF00027 IPR000595
LCP RDFF
Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain PF00044 IPR020828
LCP RDFF
Myosin_head Myosin head (motor domain) PF00063 IPR001609
GO:0003774
GO:0005524
GO:0016459
 LCP GPE
Pyr_redox Pyridine nucleotide-disulphide oxidoreductase PF00070 IPR001327
GO:0016491
GO:0050660
GO:0055114
 LCP RDFF
Ras Ras family PF00071 IPR013753
LCP RDFF
RnaseH RNase H PF00075 IPR002156
GO:0003676
GO:0004523
 LCP RDFF
Thioredoxin Thioredoxin PF00085 IPR013766
GO:0045454
 LCP RDFF
Y_phosphatase Protein-tyrosine phosphatase PF00102 IPR000242
GO:0004725
GO:0006470
 LCP PVALUE
Hormone_recep Ligand-binding domain of nuclear hormone receptor PF00104 IPR000536
GO:0003700
GO:0003707
GO:0005634
GO:0006355
 LCP KGIDDI
Peptidase_C1 Papain family cysteine protease PF00112 IPR000668
GO:0006508
GO:0008234
 LCP GPE
Enolase_C Enolase, C-terminal TIM barrel domain PF00113 IPR020810
GO:0000015
GO:0000287
GO:0004634
GO:0006096
 LCP RDFF
Histone Core histone H2A/H2B/H3/H4 PF00125 IPR007125
GO:0003677
 LCP INSITE
C1_1 Phorbol esters/diacylglycerol binding domain (C1 domain) PF00130 IPR002219
GO:0023034
 LCP KGIDDI
tRNA-synt_2 tRNA synthetases class II (D, K and N) PF00152 IPR004364
GO:0000166
GO:0004812
GO:0005524
GO:0005737
GO:0006412
GO:0006418
 LCP RDFF
Mito_carr Mitochondrial carrier protein PF00153 IPR018108
LCP DOMAINGA
Zn_clus Fungal Zn(2)-Cys(6) binuclear cluster domain PF00172 IPR001138
GO:0003700
GO:0005634
GO:0006355
GO:0008270
 LCP DOMAINGA
DHFR_1 Dihydrofolate reductase PF00186 IPR001796
GO:0004146
GO:0006545
GO:0009165
 LCP PE
Ribosomal_S3_C Ribosomal protein S3, C-terminal domain PF00189 IPR001351
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP GPE
Aminotran_3 Aminotransferase class-III PF00202 IPR005814
GO:0008483
GO:0030170
 LCP DPEA PE
Ribosomal_S19 Ribosomal protein S19 PF00203 IPR002222
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP FUSION
DNA_gyraseB DNA gyrase B PF00204 IPR013506
GO:0003677
GO:0003918
GO:0005524
GO:0005694
GO:0006265
 LCP RDFF
Profilin Profilin PF00235 IPR002097
GO:0003779
GO:0007010
GO:0015629
 LCP PVALUE
14-3-3 14-3-3 protein PF00244 IPR000308
GO:0019904
 LCP INSITE
ATP-synt_ab_C ATP synthase alpha/beta chain, C terminal domain PF00306 IPR000793
GO:0015986
GO:0016820
GO:0033178
 LCP KGIDDI
TBP Transcription factor TFIID (or TATA-binding protein, TBP) PF00352 IPR000814
GO:0003677
GO:0003702
GO:0006355
GO:0006367
 LCP INSITE
TFIIB Transcription factor TFIIB repeat PF00382 IPR013150
GO:0003743
GO:0005515
GO:0006413
 LCP RDFF
2-Hacid_dh D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain PF00389 IPR006139
GO:0008152
GO:0016616
GO:0051287
 LCP GPE
Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain PF00441 IPR006090
GO:0016627
GO:0055114
 LCP PE
UCH Ubiquitin carboxyl-terminal hydrolase PF00443 IPR001394
GO:0004221
GO:0006511
 LCP KGIDDI
SRP54 SRP54-type protein, GTPase domain PF00448 IPR000897
GO:0005525
GO:0006614
 LCP RDFF
Inositol_P Inositol monophosphatase family PF00459 IPR000760
GO:0004437
 LCP PE
MutS_V MutS domain V PF00488 IPR000432
GO:0005524
GO:0006298
GO:0030983
 LCP RDFF
AMP-binding AMP-binding enzyme PF00501 IPR000873
GO:0003824
GO:0008152
 LCP DOMAINGA
TPR_1 Tetratricopeptide repeat PF00515 IPR001440
LCP RDFF
DNA_topoisoIV DNA gyrase/topoisomerase IV, subunit A PF00521 IPR002205
GO:0003677
GO:0003918
GO:0005524
GO:0005694
GO:0006265
 LCP RDFF
Linker_histone linker histone H1 and H5 family PF00538 IPR005818
GO:0000786
GO:0003677
GO:0005634
GO:0006334
 LCP INSITE
Peptidase_M24 metallopeptidase family M24 PF00557 IPR000994
GO:0009987
 LCP PE
Abhydrolase_1 alpha/beta hydrolase fold PF00561 IPR000073
LCP RDFF
CBS CBS domain pair PF00571 IPR000644
LCP RDFF
UvrD-helicase UvrD/REP helicase PF00580 IPR000212
GO:0003677
GO:0004003
GO:0005524
GO:0006281
 LCP INSITE
tRNA-synt_2b tRNA synthetase class II core domain (G, H, P, S and T) PF00587 IPR002314
GO:0000166
GO:0004812
GO:0005524
GO:0005737
GO:0006412
GO:0006418
 LCP RDFF
TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases PF00590 IPR000878
GO:0008152
GO:0008168
 LCP PVALUE
PDZ PDZ domain (Also known as DHR or GLGF) PF00595 IPR001478
GO:0005515
 LCP DIPD
FCH Fes/CIP4 homology domain PF00611 IPR001060
LCP RDFF
RhoGAP RhoGAP domain PF00620 IPR000198
GO:0005622
GO:0007165
 LCP PVALUE
SPRY SPRY domain PF00622 IPR003877
LCP PE
zf-RanBP Zn-finger in Ran binding protein and others PF00641 IPR001876
GO:0005622
GO:0008270
 LCP FUSION
zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar) PF00642 IPR000571
GO:0003676
GO:0008270
 LCP FUSION
Peptidase_C14 Caspase domain PF00656 IPR011600
GO:0004197
GO:0006508
 LCP PVALUE
POLO_box POLO box duplicated region PF00659 IPR000959
GO:0005515
 LCP RDFF
SRP1_TIP1 Seripauperin and TIP1 family PF00660 IPR000992
GO:0006950
 LCP RDFF
AdoHcyase_NAD S-adenosyl-L-homocysteine hydrolase, NAD binding domain PF00670 IPR015878
LCP RDFF
Asparaginase Asparaginase PF00710 IPR006034
GO:0006520
 LCP PE
HhH-GPD HhH-GPD superfamily base excision DNA repair protein PF00730 IPR003265
GO:0006284
 LCP RDFF
EF1_GNE EF-1 guanine nucleotide exchange domain PF00736 IPR014038
GO:0003746
GO:0005853
GO:0006414
 LCP INSITE
tRNA-synt_1d tRNA synthetases class I (R) PF00750 IPR015945
GO:0000166
GO:0004814
GO:0005524
GO:0005737
GO:0006412
GO:0006420
 LCP RDFF
RA Ras association (RalGDS/AF-6) domain PF00788 IPR000159
GO:0007165
 LCP PE
Ribosomal_S17e Ribosomal S17 PF00833 IPR001210
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DPEA PE
Hist_deacetyl Histone deacetylase domain PF00850 IPR000286
LCP RDFF
SET SET domain PF00856 IPR001214
LCP FUSION
XPG_I XPG I-region PF00867 IPR006086
GO:0004518
GO:0006281
 LCP PVALUE
Cullin Cullin family PF00888 IPR001373
GO:0006511
GO:0031461
GO:0031625
 LCP PVALUE
Exonuc_X-T Exonuclease PF00929 IPR013520
LCP PVALUE
NAP Nucleosome assembly protein (NAP) PF00956 IPR002164
GO:0005634
GO:0006334
 LCP RDFF
GTP1_OBG GTP1/OBG PF01018 IPR006169
GO:0005525
 LCP RDFF
TatD_DNase TatD related DNase PF01026 IPR001130
GO:0016888
 LCP DPEA PE
DNA_ligase_A_M ATP dependent DNA ligase domain PF01068 IPR012310
GO:0003910
GO:0005524
GO:0006260
GO:0006281
GO:0006310
 LCP RDFF
Ribosomal_S19e Ribosomal protein S19e PF01090 IPR001266
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP PE
Heme_oxygenase Heme oxygenase PF01126 IPR016053
GO:0004392
GO:0006788
GO:0055114
 LCP PVALUE
Ribosomal_S8e Ribosomal protein S8e PF01201 IPR022309
LCP INSITE
UPF0029 Uncharacterized protein family UPF0029 PF01205 IPR001498
LCP INSITE
CAP_N Adenylate cyclase associated (CAP) N terminal PF01213 IPR013992
GO:0003779
GO:0007010
 LCP INSITE
PMI_typeI Phosphomannose isomerase type I PF01238 IPR001250
GO:0004476
GO:0005975
GO:0008270
 LCP INSITE
Pyridox_oxidase Pyridoxamine 5'-phosphate oxidase PF01243 IPR011576
GO:0010181
 LCP INSITE
Aldose_epim Aldose 1-epimerase PF01263 IPR008183
GO:0005975
GO:0016853
 LCP PVALUE
Glyco_hydro_35 Glycosyl hydrolases family 35 PF01301 IPR001944
GO:0004553
GO:0005975
 LCP PE
tRNA_anti OB-fold nucleic acid binding domain PF01336 IPR004365
GO:0003676
 LCP RDFF
PCI PCI domain PF01399 IPR000717
LCP INSITE
ArfGap Putative GTPase activating protein for Arf PF01412 IPR001164
GO:0008060
GO:0008270
GO:0032312
 LCP RDFF
R3H R3H domain PF01424 IPR001374
GO:0003676
 LCP FUSION
Amidase Amidase PF01425 IPR000120
GO:0016884
 LCP PVALUE
S4 S4 domain PF01479 IPR002942
GO:0003723
 LCP KGIDDI
PPR PPR repeat PF01535 IPR002885
LCP PE
Acyltransferase Acyltransferase PF01553 IPR002123
GO:0008152
GO:0008415
 LCP PE
Myosin_tail_1 Myosin tail PF01576 IPR002928
GO:0003774
GO:0016459
 LCP PE
MutS_I MutS domain I PF01624 IPR007695
GO:0005524
GO:0006298
GO:0030983
 LCP RDFF
FtsJ FtsJ-like methyltransferase PF01728 IPR002877
GO:0003676
GO:0008168
GO:0032259
 LCP RDFF
STAS STAS domain PF01740 IPR002645
LCP PVALUE
IBB Importin beta binding domain PF01749 IPR002652
GO:0005634
GO:0005643
GO:0005737
GO:0006606
GO:0006886
GO:0008565
 LCP RDFF
Acyl_transf_3 Acyltransferase family PF01757 IPR002656
GO:0016747
 LCP PE
Ribosomal_L18ae Ribosomal L18ae protein family PF01775 IPR021138
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP PE
TIG IPT/TIG domain PF01833 IPR002909
LCP PE
NAC NAC domain PF01849 IPR002715
LCP INSITE
eIF-5_eIF-2B Domain found in IF2B/IF5 PF01873 IPR002735
GO:0003743
GO:0006413
 LCP RDFF
MMR_HSR1 GTPase of unknown function PF01926 IPR002917
GO:0005525
GO:0005622
 LCP RDFF
DUF89 Protein of unknown function DUF89 PF01937 IPR002791
LCP PE
MAS20 MAS20 protein import receptor PF02064 IPR002056
GO:0005742
GO:0006605
GO:0006886
 LCP PVALUE
ODC_AZ Ornithine decarboxylase antizyme PF02100 IPR002993
GO:0004857
GO:0008073
 LCP PE
AT_hook AT hook motif PF02178 IPR017956
GO:0003677
 LCP DPEA PE
LON ATP-dependent protease La (LON) domain PF02190 IPR003111
GO:0004176
GO:0006508
 LCP RDFF
RIIa Regulatory subunit of type II PKA R-subunit PF02197 IPR003117
GO:0007165
GO:0008603
 LCP RDFF
TarH Tar ligand binding domain homologue PF02203 IPR003122
GO:0004888
GO:0006935
GO:0007165
GO:0016020
 LCP PVALUE
GYF GYF domain PF02213 IPR003169
LCP PE
E1_DerP2_DerF2 ML domain PF02221 IPR003172
LCP PVALUE
TFIIA_gamma_N Transcription initiation factor IIA, gamma subunit, helical domain PF02268 IPR015872
GO:0003702
GO:0005672
GO:0006367
 LCP INSITE
Syja_N SacI homology domain PF02383 IPR002013
LCP FUSION
Seryl_tRNA_N Seryl-tRNA synthetase N-terminal domain PF02403 IPR015866
GO:0000166
GO:0004828
GO:0005524
GO:0005737
GO:0006412
GO:0006434
 LCP RDFF
SMC_N RecF/RecN/SMC N terminal domain PF02463 IPR003395
GO:0005524
GO:0005694
 LCP RDFF
MORN MORN repeat PF02493 IPR003409
LCP PE
HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF02518 IPR003594
GO:0005524
 LCP RDFF
DUF155 Uncharacterised ACR, YagE family COG1723 PF02582 IPR003734
LCP INSITE
ERCC4 ERCC4 domain PF02732 IPR006166
GO:0003677
GO:0004518
GO:0005515
GO:0006259
 LCP RDFF
QRPTase_N Quinolinate phosphoribosyl transferase, N-terminal domain PF02749 IPR022412
LCP PVALUE
TFIIA_gamma_C Transcription initiation factor IIA, gamma subunit, beta-barrel domain PF02751 IPR015871
GO:0003702
GO:0005672
GO:0006367
 LCP INSITE
GST_N Glutathione S-transferase, N-terminal domain PF02798 IPR004045
LCP GPE
Gp_dh_C Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain PF02800 IPR020829
LCP RDFF
ATP-synt_ab_N ATP synthase alpha/beta family, beta-barrel domain PF02874 IPR004100
GO:0015992
GO:0016469
GO:0046034
GO:0046933
GO:0046961
 LCP KGIDDI
SRP54_N SRP54-type protein, helical bundle domain PF02881 IPR013822
GO:0005515
GO:0005525
GO:0006614
 LCP RDFF
BESS BESS motif PF02944 IPR004210
GO:0003677
 LCP PE
TBCA Tubulin binding cofactor A PF02970 IPR004226
GO:0005874
GO:0007021
GO:0051082
 LCP PVALUE
SRP_SPB Signal peptide binding domain PF02978 IPR004125
GO:0006614
GO:0008312
GO:0048500
 LCP RDFF
Cyclin_C Cyclin, C-terminal domain PF02984 IPR004367
GO:0005634
 LCP GPE
LEM LEM domain PF03020 IPR003887
GO:0005635
 LCP FUSION
Ndr Ndr family PF03096 IPR004142
LCP PE
An_peroxidase Animal haem peroxidase PF03098 IPR002007
GO:0004601
GO:0006979
GO:0020037
GO:0055114
 LCP PE
FDX-ACB Ferredoxin-fold anticodon binding domain PF03147 IPR005121
GO:0000049
GO:0000287
GO:0004826
GO:0005524
GO:0006432
GO:0008033
 LCP PVALUE
Y_phosphatase2 Tyrosine phosphatase family PF03162 IPR004861
LCP PVALUE
MH2 MH2 domain PF03166 IPR001132
GO:0005622
GO:0006355
 LCP KGIDDI
LUC7 LUC7 N_terminus PF03194 IPR004882
LCP INSITE
GILT Gamma interferon inducible lysosomal thiol reductase (GILT) PF03227 IPR004911
LCP PE
Exo_endo_phos Endonuclease/Exonuclease/phosphatase family PF03372 IPR005135
LCP FUSION
eRF1_1 eRF1 domain 1 PF03463 IPR005140
LCP PVALUE
S10_plectin Plectin/S10 domain PF03501 IPR005326
LCP INSITE
Mob1_phocein Mob1/phocein family PF03637 IPR005301
GO:0005515
 LCP PE
DUF323 Domain of unknown function (DUF323) PF03781 IPR005532
LCP DPEA PE
Nrap Nrap protein PF03813 IPR005554
LCP INSITE
DUF382 Domain of unknown function (DUF382) PF04037 IPR007180
GO:0005634
GO:0006397
 LCP INSITE
DUF383 Domain of unknown function (DUF383) PF04063 IPR007205
LCP PVALUE
DUF384 Domain of unknown function (DUF384) PF04064 IPR007206
LCP PVALUE
Not3 Not1 N-terminal domain, CCR4-Not complex component PF04065 IPR007207
GO:0005634
GO:0030528
GO:0045449
 LCP PE
Nucleoporin2 Nucleoporin autopeptidase PF04096 IPR007230
GO:0005643
GO:0006810
 LCP INSITE
Gar1 Gar1 protein RNA binding region PF04410 IPR007504
GO:0009982
GO:0030515
GO:0031429
 LCP PE
SAPS SIT4 phosphatase-associated protein PF04499 IPR007587
LCP PE
ATP-synt_Eps Mitochondrial ATP synthase epsilon chain PF04627 IPR006721
GO:0000275
GO:0015986
GO:0046933
GO:0046961
 LCP PVALUE
DUF618 Protein of unknown function, DUF618 PF04818 IPR006903
LCP FUSION
CAF1 CAF1 family ribonuclease PF04857 IPR006941
GO:0005634
 LCP PE
RNA_pol_Rpb1_3 RNA polymerase Rpb1, domain 3 PF04983 IPR007066
GO:0003677
GO:0003899
GO:0006350
 LCP KGIDDI
RNA_pol_Rpb1_7 RNA polymerase Rpb1, domain 7 PF04990 IPR007073
GO:0003677
GO:0003899
GO:0006350
 LCP KGIDDI
RNA_pol_Rpb1_6 RNA polymerase Rpb1, domain 6 PF04992 IPR007075
GO:0003677
GO:0003899
GO:0006350
 LCP KGIDDI
DUF706 Family of unknown function (DUF706) PF05153 IPR007828
GO:0005506
GO:0005737
GO:0019310
GO:0050113
GO:0055114
 LCP DPEA PE
MPPN MPPN (rrm-like) domain PF05172 IPR007846
LCP INSITE
AAR2 AAR2 protein PF05282 IPR007946
LCP INSITE
Peptidase_S28 Serine carboxypeptidase S28 PF05577 IPR008758
GO:0006508
GO:0008236
 LCP PE
SOH1 SOH1 PF05669 IPR008831
GO:0016455
GO:0016592
GO:0045449
 LCP PE
DUF846 Eukaryotic protein of unknown function (DUF846) PF05832 IPR008564
GO:0016021
 LCP DPEA PE
Suf Suppressor of forked protein (Suf) PF05843 IPR008847
GO:0005634
GO:0006397
 LCP DPEA PE
ARPC4 ARP2/3 complex 20 kDa subunit (ARPC4) PF05856 IPR008384
GO:0005856
GO:0030041
 LCP PE
zf-U1 U1 zinc finger PF06220 IPR013085
GO:0008270
 LCP DPEA PE
Clp1 Pre-mRNA cleavage complex II protein Clp1 PF06807 IPR010655
LCP DPEA PE
Elongin_A RNA polymerase II transcription factor SIII (Elongin) subunit A PF06881 IPR010684
GO:0005634
GO:0016021
GO:0045449
 LCP PE
PAM2 Ataxin-2 C-terminal region PF07145 IPR009818
LCP PE
Sec10 Exocyst complex component Sec10 PF07393 IPR009976
GO:0005737
GO:0006887
GO:0048278
 LCP PE
EGF_CA Calcium binding EGF domain PF07645 IPR013091
LCP PE
bZIP_2 Basic region leucine zipper PF07716 IPR011700
GO:0003700
GO:0005634
GO:0006355
GO:0043565
GO:0046983
 LCP INSITE
N2227 N2227-like protein PF07942 IPR012901
LCP PVALUE
DSL1 DSL1 PF08505 IPR013712
LCP INSITE
eIF3_subunit Translation initiation factor eIF3 subunit PF08597 IPR013906
LCP INSITE
CAP_C DE Adenylate cyclase associated (CAP) C terminal PF08603 IPR013912
GO:0003779
GO:0007010
 LCP INSITE
Pet127 Mitochondrial protein Pet127 PF08634 IPR013943
LCP INSITE
DASH_Dad1 DASH complex subunit Dad1 PF08649 IPR013958
LCP INSITE
eIF2A Eukaryotic translation initiation factor eIF2A PF08662 IPR013979
LCP PVALUE
NuA4 Histone acetyltransferase subunit NuA4 PF09340 IPR015418
LCP INSITE



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