Pfam ID
Description
Accession
Interpro ID
GO ID
zf-C4
Zinc finger, C4 type (two domains)
PF00105
IPR001628
GO:0003700
GO:0005634
GO:0006355
GO:0008270
GO:0043565
zf-C4
forms interactions with
Pfam ID
Description
Accession
Interpro ID
GO ID
Notes
Source
Hormone_recep
Ligand-binding domain of nuclear hormone receptor
PF00104
IPR000536
GO:0003700
GO:0003707
GO:0005634
GO:0006355
zf-C4
Zinc finger, C4 type (two domains)
PF00105
IPR001628
GO:0003700
GO:0005634
GO:0006355
GO:0008270
GO:0043565
Pkinase
Protein kinase domain
PF00069
IPR017442
GO:0004672
GO:0005524
GO:0006468
RRM_1
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
PF00076
IPR000504
GO:0003676
zf-C2H2
Zinc finger, C2H2 type
PF00096
IPR007087
GO:0005622
GO:0008270
Filamin
Filamin/ABP280 repeat
PF00630
IPR017868
Ribosomal_L7Ae
Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
PF01248
IPR004038
GTP_EFTU_D3
Elongation factor Tu C-terminal domain
PF03143
IPR004160
GO:0005525
Homeobox
Homeobox domain
PF00046
IPR001356
GO:0003700
GO:0006355
GO:0043565
HECT
HECT-domain (ubiquitin-transferase)
PF00632
IPR000569
GO:0005622
GO:0006464
GO:0016881
BIR
Inhibitor of Apoptosis domain
PF00653
IPR001370
GO:0005622
PAS
PAS fold
PF00989
IPR013767
GO:0006355
CKS
Cyclin-dependent kinase regulatory subunit
PF01111
IPR000789
GO:0007049
GO:0016538
TFIID-31kDa
Transcription initiation factor IID, 31kD subunit
PF02291
IPR003162
GO:0006352
7tm_1
7 transmembrane receptor (rhodopsin family)
PF00001
IPR000276
GO:0007186
GO:0016021
GTP_EFTU
Elongation factor Tu GTP binding domain
PF00009
IPR000795
GO:0003924
GO:0005525
Lectin_C
Lectin C-type domain
PF00059
IPR001304
GO:0005488
RnaseH
RNase H
PF00075
IPR002156
GO:0003676
GO:0004523
SNF2_N
SNF2 family N-terminal domain
PF00176
IPR000330
GO:0003677
GO:0005524
HSP90
Hsp90 protein
PF00183
IPR020576
ubiquitin
Ubiquitin family
PF00240
IPR000626
2-Hacid_dh
D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
PF00389
IPR006139
GO:0008152
GO:0016616
GO:0051287
WD40
WD domain, G-beta repeat
PF00400
IPR019781
Bromodomain
Bromodomain
PF00439
IPR001487
G-alpha
G-protein alpha subunit
PF00503
IPR001019
GO:0004871
GO:0007186
GO:0019001
PDZ
PDZ domain (Also known as DHR or GLGF)
PF00595
IPR001478
GO:0005515
BTB
BTB/POZ domain
PF00651
IPR013069
GO:0005515
Hist_deacetyl
Histone deacetylase domain
PF00850
IPR000286
SET
SET domain
PF00856
IPR001214
Transposase_1
Transposase
PF01359
IPR001888
Col_cuticle_N
Nematode cuticle collagen N-terminal domain
PF01484
IPR002486
GO:0042302
Rad1
Repair protein Rad1/Rec1/Rad17
PF02144
IPR003021
GO:0003684
GO:0005634
GO:0006281
GO:0008853
K_tetra
K+ channel tetramerisation domain
PF02214
IPR003131
GO:0005249
GO:0006813
GO:0008076
GO:0016020
2-Hacid_dh_C
D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
PF02826
IPR006140
GO:0016616
GO:0048037
zf-MIZ
MIZ/SP-RING zinc finger
PF02891
IPR004181
GO:0008270
GTP_EFTU_D2
Elongation factor Tu domain 2
PF03144
IPR004161
GO:0005525
UDG
Uracil DNA glycosylase superfamily
PF03167
IPR005122
Jun
Jun-like transcription factor
PF03957
IPR005643
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Copyright © 2007, Raghavachari et al.
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