Pfam ID Description Accession Interpro ID GO ID
RnaseH RNase H PF00075 IPR002156
GO:0003676
GO:0004523



RnaseH forms interactions with

Pfam ID Description Accession Interpro ID GO ID Notes Source
RnaseH RNase H PF00075 IPR002156
GO:0003676
GO:0004523
PDB IPFAM 3DID
RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) PF00078 IPR000477
GO:0003723
GO:0003964
GO:0006278
PDB IPFAM 3DID ME FUSION
SBP_bac_1 Bacterial extracellular solute-binding protein PF01547 IPR006059
GO:0005215
GO:0006810
PDB 3DID
RVT_connect Reverse transcriptase connection domain PF06815 IPR010659
GO:0003964
GO:0006278
PDB IPFAM 3DID ME
RVT_thumb Reverse transcriptase thumb domain PF06817 IPR010661
GO:0003964
GO:0006278
PDB IPFAM 3DID ME
RVP Retroviral aspartyl protease PF00077 IPR018061
HCP ME FUSION
Gag_p17 gag gene protein p17 (matrix protein) PF00540 IPR000071
GO:0005198
HCP ME
Integrase Integrase DNA binding domain PF00552 IPR001037
GO:0003676
GO:0008907
HCP ME
Gag_p24 gag gene protein p24 (core nucleocapsid protein) PF00607 IPR000721
GO:0016032
HCP ME
rve Integrase core domain PF00665 IPR001584
GO:0003677
GO:0015074
HCP ME FUSION
dUTPase dUTPase PF00692 IPR008180
GO:0016787
GO:0046080
HCP ME FUSION
Integrase_Zn Integrase Zinc binding domain PF02022 IPR003308
GO:0003677
GO:0008270
GO:0008907
GO:0015074
HCP ME
Homeobox Homeobox domain PF00046 IPR001356
GO:0003700
GO:0006355
GO:0043565
LCP DPEA PE
RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) PF00076 IPR000504
GO:0003676
LCP RDFF
zf-C4 Zinc finger, C4 type (two domains) PF00105 IPR001628
GO:0003700
GO:0005634
GO:0006355
GO:0008270
GO:0043565
LCP DPEA PE
PGAM Phosphoglycerate mutase family PF00300 IPR013078
LCP FUSION
EMP24_GP25L emp24/gp25L/p24 family/GOLD PF01105 IPR000348
GO:0006810
GO:0016021
LCP DPEA PE
Spuma_A9PTase Spumavirus aspartic protease (A9) PF03539 IPR001641
GO:0004190
GO:0006508
LCP FUSION




Terms of use
Copyright © 2007, Raghavachari et al.
Comments or questions on the site? Send an email to jothi AT mail.nih.gov