Pfam ID Description Accession Interpro ID GO ID
Homeobox Homeobox domain PF00046 IPR001356
GO:0003700
GO:0006355
GO:0043565



Homeobox forms interactions with

Pfam ID Description Accession Interpro ID GO ID Notes Source
Homeobox Homeobox domain PF00046 IPR001356
GO:0003700
GO:0006355
GO:0043565
 PDB IPFAM 3DID ME GPE DIPD RDFF KGIDDI INSITE
Pou Pou domain - N-terminal to homeobox domain PF00157 IPR000327
GO:0003700
GO:0006355
 PDB IPFAM 3DID ME
SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain) PF00319 IPR002100
GO:0003700
GO:0005634
GO:0006355
GO:0043565
 PDB IPFAM 3DID ME INSITE
SBP_bac_1 Bacterial extracellular solute-binding protein PF01547 IPR006059
GO:0005215
GO:0006810
 PDB 3DID
CUT CUT domain PF02376 IPR003350
GO:0003677
 PDB IPFAM 3DID
HNF-1B_C Hepatocyte nuclear factor 1 (HNF-1), beta isoform C terminus PF04812 IPR006897
GO:0005634
GO:0016563
GO:0045941
 PDB IPFAM
HNF-1_N Hepatocyte nuclear factor 1 (HNF-1), N terminus PF04814 IPR006899
GO:0005634
GO:0016563
GO:0045941
 PDB IPFAM 3DID
PD-C2-AF1 POU domain, class 2, associating factor 1 PF09310 IPR015389
PDB IPFAM
HLH Helix-loop-helix DNA-binding domain PF00010 IPR001092
GO:0030528
GO:0045449
 HCP ME
Pkinase Protein kinase domain PF00069 IPR017442
GO:0004672
GO:0005524
GO:0006468
 HCP ME PE GPE RDFF KGIDDI
RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) PF00076 IPR000504
GO:0003676
 HCP ME KGIDDI
zf-C2H2 Zinc finger, C2H2 type PF00096 IPR007087
GO:0005622
GO:0008270
 HCP ME FUSION GPE RDFF KGIDDI
PAX 'Paired box' domain PF00292 IPR001523
GO:0003677
GO:0045449
 HCP ME FUSION DIPD
WD40 WD domain, G-beta repeat PF00400 IPR019781
HCP GPE RDFF KGIDDI DOMAINGA
AT_hook AT hook motif PF02178 IPR017956
GO:0003677
 HCP FUSION PE RDFF
MH2 MH2 domain PF03166 IPR001132
GO:0005622
GO:0006355
 HCP ME GPE KGIDDI
EGF EGF-like domain PF00008 IPR006209
MCP PE KGIDDI
Hormone_recep Ligand-binding domain of nuclear hormone receptor PF00104 IPR000536
GO:0003700
GO:0003707
GO:0005634
GO:0006355
 MCP GPE
zf-C4 Zinc finger, C4 type (two domains) PF00105 IPR001628
GO:0003700
GO:0005634
GO:0006355
GO:0008270
GO:0043565
 MCP KGIDDI
Myb_DNA-binding Myb-like DNA-binding domain PF00249 IPR014778
MCP PE RDFF
Fork_head Fork head domain PF00250 IPR001766
GO:0003700
GO:0005634
GO:0006355
GO:0043565
 MCP PE
T-box T-box PF00907 IPR001699
GO:0003700
GO:0005634
GO:0006355
 MCP PE
vATP-synt_AC39 ATP synthase (C/AC39) subunit PF01992 IPR002843
GO:0015078
GO:0015986
GO:0033177
 MCP PE INSITE
2-Hacid_dh_C D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PF02826 IPR006140
GO:0016616
GO:0048037
 MCP GPE KGIDDI
MH1 MH1 domain PF03165 IPR003619
GO:0005622
GO:0006355
 MCP KGIDDI
MAT_Alpha1 Mating-type protein MAT alpha 1 PF04769 IPR006856
GO:0000772
GO:0003677
GO:0005634
GO:0045895
 MCP RDFF INSITE
GTP_EFTU Elongation factor Tu GTP binding domain PF00009 IPR000795
GO:0003924
GO:0005525
 LCP GPE
KH_1 KH domain PF00013 IPR018111
GO:0003723
 LCP PE
Kunitz_BPTI Kunitz/Bovine pancreatic trypsin inhibitor domain PF00014 IPR002223
GO:0004867
 LCP FUSION
ig Immunoglobulin domain PF00047 IPR013151
LCP KGIDDI
Ldl_recept_a Low-density lipoprotein receptor domain class A PF00057
LCP GPE
RnaseH RNase H PF00075 IPR002156
GO:0003676
GO:0004523
 LCP DPEA PE
Peptidase_C1 Papain family cysteine protease PF00112 IPR000668
GO:0006508
GO:0008234
 LCP PE
Cyclin_N Cyclin, N-terminal domain PF00134 IPR006671
LCP KGIDDI
COesterase Carboxylesterase PF00135 IPR002018
LCP PE
C2 C2 domain PF00168 IPR000008
LCP PE
Proteasome Proteasome A-type and B-type PF00227 IPR001353
GO:0004298
GO:0005839
GO:0051603
 LCP INSITE
Ribosomal_L22 Ribosomal protein L22p/L17e PF00237 IPR001063
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DPEA PE
Ribosomal_L16 Ribosomal protein L16p/L10e PF00252 IPR016180
GO:0003735
GO:0005840
GO:0006412
 LCP DPEA PE
Helicase_C Helicase conserved C-terminal domain PF00271 IPR001650
GO:0003676
GO:0004386
GO:0005524
 LCP KGIDDI
2-Hacid_dh D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain PF00389 IPR006139
GO:0008152
GO:0016616
GO:0051287
 LCP GPE
WW WW domain PF00397 IPR001202
GO:0005515
 LCP PE
LIM LIM domain PF00412 IPR001781
GO:0008270
 LCP FUSION
Prenyltrans Prenyltransferase and squalene oxidase repeat PF00432 IPR001330
GO:0003824
 LCP DPEA PE
Pkinase_C Protein kinase C terminal domain PF00433 IPR017892
GO:0004674
GO:0005524
GO:0006468
 LCP KGIDDI
Bromodomain Bromodomain PF00439 IPR001487
LCP KGIDDI
PP2C Protein phosphatase 2C PF00481 IPR014045
LCP PE
FHA FHA domain PF00498 IPR000253
LCP PE
HMG_box HMG (high mobility group) box PF00505 IPR000910
GO:0003677
GO:0005634
 LCP PE
RHD Rel homology domain (RHD) PF00554 IPR011539
GO:0003700
GO:0005634
GO:0045449
 LCP KGIDDI
IQ IQ calmodulin-binding motif PF00612 IPR000048
LCP PE
PHD PHD-finger PF00628 IPR019787
LCP FUSION
Motile_Sperm MSP (Major sperm protein) domain PF00635 IPR000535
GO:0005198
 LCP PE
zf-RanBP Zn-finger in Ran binding protein and others PF00641 IPR001876
GO:0005622
GO:0008270
 LCP PE
Peptidase_C2 Calpain family cysteine protease PF00648 IPR001300
GO:0004198
GO:0005622
GO:0006508
 LCP GPE
BTB BTB/POZ domain PF00651 IPR013069
GO:0005515
 LCP PE
Hydrolase haloacid dehalogenase-like hydrolase PF00702 IPR005834
GO:0003824
GO:0008152
 LCP KGIDDI
DAGK_cat Diacylglycerol kinase catalytic domain PF00781 IPR001206
GO:0004143
GO:0007205
 LCP PE
PUF Pumilio-family RNA binding repeat PF00806 IPR001313
GO:0003723
 LCP DOMAINGA
PTR2 POT family PF00854 IPR000109
GO:0005215
GO:0006857
GO:0016020
 LCP PE
XPG_I XPG I-region PF00867 IPR006086
GO:0004518
GO:0006281
 LCP GPE
Sec1 Sec1 family PF00995 IPR001619
GO:0006904
GO:0016192
 LCP PE
Ribosomal_L27 Ribosomal L27 protein PF01016 IPR001684
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DPEA PE
CK_II_beta Casein kinase II regulatory subunit PF01214 IPR000704
GO:0005956
GO:0019887
 LCP PE
Dynein_light Dynein light chain type 1 PF01221 IPR001372
GO:0003777
GO:0005875
GO:0007017
 LCP PE
Ribosomal_S26e Ribosomal protein S26e PF01283 IPR000892
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DPEA PE
LSM LSM domain PF01423 IPR001163
LCP INSITE
V_ATPase_I V-type ATPase 116kDa subunit family PF01496 IPR002490
GO:0015078
GO:0015986
GO:0033177
 LCP PE
NAD_kinase ATP-NAD kinase PF01513 IPR002504
GO:0003951
GO:0008152
 LCP PE
CBM_14 Chitin binding Peritrophin-A domain PF01607 IPR002557
GO:0005576
GO:0006030
GO:0008061
 LCP DPEA PE
Ribosomal_S27e Ribosomal protein S27 PF01667 IPR000592
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP GPE
Surp Surp module PF01805 IPR000061
GO:0003723
GO:0006396
 LCP PE
TIG IPT/TIG domain PF01833 IPR002909
LCP KGIDDI
START START domain PF01852 IPR002913
LCP FUSION
Prefoldin_2 Prefoldin subunit PF01920 IPR002777
GO:0006457
GO:0016272
GO:0051082
 LCP PE
ArsA_ATPase Anion-transporting ATPase PF02374
LCP INSITE
Topoisom_I_N Eukaryotic DNA topoisomerase I, DNA binding fragment PF02919 IPR008336
GO:0003677
GO:0003917
GO:0005694
GO:0006265
 LCP PVALUE
UCR_TM Ubiquinol cytochrome reductase transmembrane region PF02921 IPR004192
GO:0008121
GO:0055114
 LCP DPEA PE
HEAT HEAT repeat PF02985 IPR000357
LCP DPEA PE
GTP_EFTU_D2 Elongation factor Tu domain 2 PF03144 IPR004161
GO:0005525
 LCP GPE
Tektin Tektin family PF03148 IPR000435
GO:0000226
GO:0005874
 LCP PE
TFIIA Transcription factor IIA, alpha/beta subunit PF03153 IPR004855
GO:0003702
GO:0005672
GO:0006367
 LCP KGIDDI
S10_plectin Plectin/S10 domain PF03501 IPR005326
LCP DPEA PE
TF_Otx Otx1 transcription factor PF03529 IPR013851
GO:0003700
GO:0005634
GO:0007275
 LCP FUSION
ELK ELK domain PF03789 IPR005539
GO:0003677
GO:0005634
 LCP FUSION
KNOX1 KNOX1 domain PF03790 IPR005540
GO:0003677
GO:0005634
 LCP FUSION
KNOX2 KNOX2 domain PF03791 IPR005541
GO:0003677
GO:0005634
 LCP FUSION
Ndc80_HEC HEC/Ndc80p family PF03801 IPR005550
LCP DPEA
Scramblase Scramblase PF03803 IPR005552
LCP PE
MSSP Male specific sperm protein PF03940 IPR005634
LCP DPEA PE
Rcd1 Cell differentiation family, Rcd1-like PF04078 IPR007216
LCP DPEA PE
TPD52 Tumour protein D52 family PF04201 IPR007327
LCP DPEA PE
CAF1 CAF1 family ribonuclease PF04857 IPR006941
GO:0005634
 LCP DPEA PE
Sprouty Sprouty protein (Spry) PF05210 IPR007875
GO:0007275
GO:0009966
GO:0016020
 LCP PE
UMP1 Proteasome maturation factor UMP1 PF05348 IPR008012
LCP INSITE
DUF814 Domain of unknown function (DUF814) PF05670 IPR008532
LCP DPEA PE
Torsin Torsin PF06309 IPR010448
GO:0005524
GO:0005783
GO:0051085
 LCP DPEA PE
COG6 Conserved oligomeric complex COG6 PF06419 IPR010490
LCP DPEA PE
Rab5ip Rab5-interacting protein (Rab5ip) PF07019
LCP DPEA PE
EGF_CA Calcium binding EGF domain PF07645 IPR013091
LCP PE
Kazal_2 Kazal-type serine protease inhibitor domain PF07648 IPR011497
LCP GPE



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