LSM

• Pfam ID: LSM
• Description: LSM domain
• Accession: PF01423
• Interpro ID: IPR001163

LSM forms interactions with

Pfam ID	Description	Accession	Interpro ID	GO ID	Notes	Source
LSM	LSM domain	PF01423	IPR001163
GTP_EFTU	Elongation factor Tu GTP binding domain	PF00009	IPR000795	GO:0003924 GO:0005525
Pkinase	Protein kinase domain	PF00069	IPR017442	GO:0004672 GO:0005524 GO:0006468
RRM_1	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	PF00076	IPR000504	GO:0003676
E1-E2_ATPase	E1-E2 ATPase	PF00122	IPR008250	GO:0005524 GO:0006754 GO:0016020 GO:0016820
tRNA-synt_2	tRNA synthetases class II (D, K and N)	PF00152	IPR004364	GO:0000166 GO:0004812 GO:0005524 GO:0005737 GO:0006412 GO:0006418
DEAD	DEAD/DEAH box helicase	PF00270	IPR011545	GO:0003676 GO:0005524 GO:0008026
Helicase_C	Helicase conserved C-terminal domain	PF00271	IPR001650	GO:0003676 GO:0004386 GO:0005524
WD40	WD domain, G-beta repeat	PF00400	IPR019781
IF-2B	Initiation factor 2 subunit family	PF01008	IPR000649	GO:0044237
Ribosomal_S6e	Ribosomal protein S6e	PF01092	IPR001377	GO:0003735 GO:0005622 GO:0005840 GO:0006412
TFIIS_C	Transcription factor S-II (TFIIS)	PF01096	IPR001222	GO:0003676 GO:0008270 GO:0030528 GO:0045449
RNase_PH	3' exoribonuclease family, domain 1	PF01138	IPR001247	GO:0000175 GO:0003723 GO:0006396
Ribosomal_S28e	Ribosomal protein S28e	PF01200	IPR000289	GO:0003735 GO:0005622 GO:0005840 GO:0006412
mRNA_cap_enzyme	mRNA capping enzyme, catalytic domain	PF01331	IPR001339	GO:0004484 GO:0006370 GO:0006397
IF4E	Eukaryotic initiation factor 4E	PF01652	IPR001040	GO:0003723 GO:0003743 GO:0005737 GO:0006413
Nop	Putative snoRNA binding domain	PF01798	IPR002687
eIF-6	eIF-6 family	PF01912	IPR002769	GO:0042256 GO:0043022
RNA_POL_M_15KD	RNA polymerases M/15 Kd subunit	PF02150	IPR001529	GO:0003677 GO:0003899 GO:0006350
DIM1	Mitosis protein DIM1	PF02966	IPR004123	GO:0005681 GO:0007067
Saccharop_dh	Saccharopine dehydrogenase	PF03435	IPR005097
mRNA_cap_C	mRNA capping enzyme, C-terminal domain	PF03919	IPR013846
zf-U1	U1 zinc finger	PF06220	IPR013085	GO:0008270
Ank	Ankyrin repeat	PF00023	IPR002110
Asp	Eukaryotic aspartyl protease	PF00026	IPR001461	GO:0004190 GO:0006508
zf-C2H2	Zinc finger, C2H2 type	PF00096	IPR007087	GO:0005622 GO:0008270
zf-CCHC	Zinc knuckle	PF00098	IPR001878	GO:0003676 GO:0008270
GATase	Glutamine amidotransferase class-I	PF00117	IPR000991	GO:0003824
Metallophos	Calcineurin-like phosphoesterase	PF00149	IPR004843	GO:0016787
PH	PH domain	PF00169	IPR001849
DnaJ	DnaJ domain	PF00226	IPR001623	GO:0031072
Pyridoxal_deC	Pyridoxal-dependent decarboxylase conserved domain	PF00282	IPR002129	GO:0016831 GO:0019752 GO:0030170
Ribonuc_red_lgN	Ribonucleotide reductase, all-alpha domain	PF00317	IPR013509	GO:0004748 GO:0005524 GO:0006260 GO:0055114
Biotin_lipoyl	Biotin-requiring enzyme	PF00364	IPR000089
Arm	Armadillo/beta-catenin-like repeat	PF00514	IPR000225
SpoU_methylase	SpoU rRNA Methylase family	PF00588	IPR001537	GO:0003723 GO:0006396 GO:0008173
TP_methylase	Tetrapyrrole (Corrin/Porphyrin) Methylases	PF00590	IPR000878	GO:0008152 GO:0008168
DEP	Domain found in Dishevelled, Egl-10, and Pleckstrin	PF00610	IPR000591	GO:0023034
RhoGAP	RhoGAP domain	PF00620	IPR000198	GO:0005622 GO:0007165
SRP1_TIP1	Seripauperin and TIP1 family	PF00660	IPR000992	GO:0006950
EFG_C	Elongation factor G C-terminus	PF00679	IPR000640	GO:0005525
Hydrolase	haloacid dehalogenase-like hydrolase	PF00702	IPR005834	GO:0003824 GO:0008152
Glyco_transf_20	Glycosyltransferase family 20	PF00982	IPR001830	GO:0003824 GO:0005992
Ribosomal_L36e	Ribosomal protein L36e	PF01158	IPR000509	GO:0003735 GO:0005622 GO:0005840 GO:0006412
CK_II_beta	Casein kinase II regulatory subunit	PF01214	IPR000704	GO:0005956 GO:0019887
Ribosomal_L7Ae	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family	PF01248	IPR004038
Ribosomal_S7e	Ribosomal protein S7e	PF01251	IPR000554	GO:0003735 GO:0005622 GO:0005840 GO:0006412
Ribosomal_S26e	Ribosomal protein S26e	PF01283	IPR000892	GO:0003735 GO:0005622 GO:0005840 GO:0006412
Ribosomal_L13e	Ribosomal protein L13e	PF01294	IPR001380	GO:0003735 GO:0005622 GO:0005840 GO:0006412
Mov34	Mov34/MPN/PAD-1 family	PF01398	IPR000555
PCI	PCI domain	PF01399	IPR000717
G-patch	G-patch domain	PF01585	IPR000467	GO:0003676 GO:0005622
Adaptin_N	Adaptin N terminal region	PF01602	IPR002553	GO:0005515 GO:0006886 GO:0016192 GO:0030117
IBB	Importin beta binding domain	PF01749	IPR002652	GO:0005634 GO:0005643 GO:0005737 GO:0006606 GO:0006886 GO:0008565
Surp	Surp module	PF01805	IPR000061	GO:0003723 GO:0006396
DUF125	Integral membrane protein DUF125	PF01988	IPR008217
HAT	HAT (Half-A-TPR) repeat	PF02184	IPR003107	GO:0005622 GO:0006396
HORMA	HORMA domain	PF02301	IPR003511	GO:0007067
HATPase_c	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	PF02518	IPR003594	GO:0005524
ERCC4	ERCC4 domain	PF02732	IPR006166	GO:0003677 GO:0004518 GO:0005515 GO:0006259
AIRS_C	AIR synthase related protein, C-terminal domain	PF02769	IPR010918
2-Hacid_dh_C	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain	PF02826	IPR006140	GO:0016616 GO:0048037
MIF4G	MIF4G domain	PF02854	IPR003890	GO:0005515 GO:0016070
PRP38	PRP38 family	PF03371	IPR005037
DUF382	Domain of unknown function (DUF382)	PF04037	IPR007180	GO:0005634 GO:0006397
PSP	PSP	PF04046	IPR006568
Mak10	Mak10 subunit, NatC N(alpha)-terminal acetyltransferase	PF04112	IPR007244
Mss4	Mss4 protein	PF04421	IPR007515	GO:0005085 GO:0007264
DCP2	Dcp2, box A domain	PF05026	IPR007722	GO:0003723 GO:0016787 GO:0030145
Lsm_interact	Lsm interaction motif	PF05391	IPR008669
AAA	ATPase family associated with various cellular activities (AAA)	PF00004	IPR003959	GO:0005524
ABC_tran	ABC transporter	PF00005	IPR003439	GO:0005524 GO:0016887
Homeobox	Homeobox domain	PF00046	IPR001356	GO:0003700 GO:0006355 GO:0043565
Peptidase_S8	Subtilase family	PF00082	IPR000209	GO:0004252 GO:0006508
zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	PF00097	IPR018957
adh_short	short chain dehydrogenase	PF00106	IPR002198	GO:0008152 GO:0016491
tRNA-synt_1	tRNA synthetases class I (I, L, M and V)	PF00133	IPR002300	GO:0000166 GO:0004812 GO:0005524 GO:0005737 GO:0006412 GO:0006418
Mito_carr	Mitochondrial carrier protein	PF00153	IPR018108
Zn_clus	Fungal Zn(2)-Cys(6) binuclear cluster domain	PF00172	IPR001138	GO:0003700 GO:0005634 GO:0006355 GO:0008270
Aminotran_3	Aminotransferase class-III	PF00202	IPR005814	GO:0008483 GO:0030170
Proteasome	Proteasome A-type and B-type	PF00227	IPR001353	GO:0004298 GO:0005839 GO:0051603
Myb_DNA-binding	Myb-like DNA-binding domain	PF00249	IPR014778
CPSase_L_chain	Carbamoyl-phosphate synthase L chain, N-terminal domain	PF00289	IPR005481	GO:0003824 GO:0008152
NUDIX	NUDIX domain	PF00293	IPR000086	GO:0016787
Peptidase_S9	Prolyl oligopeptidase family	PF00326	IPR001375	GO:0006508 GO:0008236
TBP	Transcription factor TFIID (or TATA-binding protein, TBP)	PF00352	IPR000814	GO:0003677 GO:0003702 GO:0006355 GO:0006367
PFK	Phosphofructokinase	PF00365	IPR000023	GO:0003872 GO:0005945 GO:0006096
TFIIB	Transcription factor TFIIB repeat	PF00382	IPR013150	GO:0003743 GO:0005515 GO:0006413
WW	WW domain	PF00397	IPR001202	GO:0005515
LIM	LIM domain	PF00412	IPR001781	GO:0008270
Ribosomal_60s	60s Acidic ribosomal protein	PF00428	IPR001813	GO:0003735 GO:0005622 GO:0005840 GO:0006414
SHMT	Serine hydroxymethyltransferase	PF00464	IPR001085	GO:0004372 GO:0006544 GO:0006563
MCM	MCM2/3/5 family	PF00493	IPR001208	GO:0003677 GO:0005524 GO:0006260
TPR_1	Tetratricopeptide repeat	PF00515	IPR001440
RNA_pol_Rpb2_6	RNA polymerase Rpb2, domain 6	PF00562	IPR007120	GO:0003677 GO:0003899 GO:0006350
CBS	CBS domain pair	PF00571	IPR000644
Acetyltransf_1	Acetyltransferase (GNAT) family	PF00583	IPR022610
AIRS	AIR synthase related protein, N-terminal domain	PF00586	IPR000728	GO:0003824
F-box	F-box domain	PF00646	IPR001810
CRAL_TRIO	CRAL/TRIO domain	PF00650	IPR001251
ABC_membrane	ABC transporter transmembrane region	PF00664	IPR001140	GO:0005524 GO:0006810 GO:0016021 GO:0042626 GO:0055085
rve	Integrase core domain	PF00665	IPR001584	GO:0003677 GO:0015074
Peptidase_M16	Insulinase (Peptidase family M16)	PF00675	IPR011765	GO:0004222 GO:0006508
EF1_GNE	EF-1 guanine nucleotide exchange domain	PF00736	IPR014038	GO:0003746 GO:0005853 GO:0006414
XPG_N	XPG N-terminal domain	PF00752	IPR006085	GO:0004518 GO:0006281
PX	PX domain	PF00787	IPR001683	GO:0005515 GO:0007154 GO:0035091
RA	Ras association (RalGDS/AF-6) domain	PF00788	IPR000159	GO:0007165
Ribosomal_L15e	Ribosomal L15	PF00827	IPR000439	GO:0003735 GO:0005622 GO:0005840 GO:0006412
Ribosomal_L39	Ribosomal L39 protein	PF00832	IPR000077	GO:0003735 GO:0005622 GO:0005840 GO:0006412
XPG_I	XPG I-region	PF00867	IPR006086	GO:0004518 GO:0006281
Ribosomal_S4e	Ribosomal family S4e	PF00900	IPR013845
DPPIV_N	Dipeptidyl peptidase IV (DPP IV) N-terminal region	PF00930	IPR002469	GO:0006508 GO:0016020
Ribosomal_L44	Ribosomal protein L44	PF00935	IPR000552	GO:0003735 GO:0005622 GO:0005840 GO:0006412
Ribosomal_S3Ae	Ribosomal S3Ae family	PF01015	IPR001593	GO:0003735 GO:0005622 GO:0005840 GO:0006412
GTP1_OBG	GTP1/OBG	PF01018	IPR006169	GO:0005525
Carboxyl_trans	Carboxyl transferase domain	PF01039	IPR000022	GO:0016874
Ribonuc_L-PSP	Endoribonuclease L-PSP	PF01042	IPR006175
GARS_A	Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain	PF01071	IPR020561
Ribosomal_S19e	Ribosomal protein S19e	PF01090	IPR001266	GO:0003735 GO:0005622 GO:0005840 GO:0006412
Ribosomal_L21e	Ribosomal protein L21e	PF01157	IPR001147	GO:0003735 GO:0005622 GO:0005840 GO:0006412
ATP_bind_3	PP-loop family	PF01171	IPR011063
SBDS	Shwachman-Bodian-Diamond syndrome (SBDS) protein	PF01172	IPR019783
eIF-1a	Translation initiation factor 1A / IF-1	PF01176	IPR006196	GO:0003723 GO:0003743 GO:0006413
RNA_pol_Rpb5_C	RNA polymerase Rpb5, C-terminal domain	PF01191	IPR000783	GO:0003677 GO:0003899 GO:0006350
RNA_pol_N	RNA polymerases N / 8 kDa subunit	PF01194	IPR000268	GO:0003677 GO:0003899 GO:0006351
Ribosomal_L31e	Ribosomal protein L31e	PF01198	IPR000054	GO:0003735 GO:0005622 GO:0005840 GO:0006412
Ribosomal_S8e	Ribosomal protein S8e	PF01201	IPR022309
SKI	Shikimate kinase	PF01202	IPR000623	GO:0004765 GO:0005524
Ribosomal_L24e	Ribosomal protein L24e	PF01246	IPR000988	GO:0003735 GO:0005622 GO:0005840 GO:0006412
Fibrillarin	Fibrillarin	PF01269	IPR000692	GO:0003723 GO:0006364 GO:0008033 GO:0008168
Ribosomal_L19e	Ribosomal protein L19e	PF01280	IPR000196	GO:0003735 GO:0005622 GO:0005840 GO:0006412
tRNA_anti	OB-fold nucleic acid binding domain	PF01336	IPR004365	GO:0003676
ARID	ARID/BRIGHT DNA binding domain	PF01388	IPR001606	GO:0003677 GO:0005622
PPR	PPR repeat	PF01535	IPR002885
6PF2K	6-phosphofructo-2-kinase	PF01591	IPR013079	GO:0003873 GO:0005524 GO:0006000
Ribosomal_S27	Ribosomal protein S27a	PF01599	IPR002906	GO:0003735 GO:0005622 GO:0005840 GO:0006412
Ribosomal_L32e	Ribosomal protein L32	PF01655	IPR001515	GO:0003735 GO:0005622 GO:0005840 GO:0006412
Ribosomal_S27e	Ribosomal protein S27	PF01667	IPR000592	GO:0003735 GO:0005622 GO:0005840 GO:0006412
Ribosomal_L37ae	Ribosomal L37ae protein family	PF01780	IPR002674	GO:0003735 GO:0005622 GO:0005840 GO:0006412
Ribosomal_L38e	Ribosomal L38e protein family	PF01781	IPR002675	GO:0003735 GO:0005622 GO:0005840 GO:0006412
Glyco_transf_15	Glycolipid 2-alpha-mannosyltransferase	PF01793	IPR002685	GO:0004377 GO:0006486 GO:0016020
FF	FF domain	PF01846	IPR002713
DUF46	Putative integral membrane protein DUF46	PF01864	IPR002726
Diphthamide_syn	Putative diphthamide synthesis protein	PF01866	IPR002728
AMMECR1	AMMECR1	PF01871	IPR002733
eIF-5_eIF-2B	Domain found in IF2B/IF5	PF01873	IPR002735	GO:0003743 GO:0006413
PTS_2-RNA	RNA 2'-phosphotransferase, Tpt1 / KptA family	PF01885	IPR002745	GO:0006388 GO:0016772
DNA_primase_S	Eukaryotic and archaeal DNA primase small subunit	PF01896	IPR002755	GO:0003896 GO:0006269
ATP_bind_4	ATP-binding region	PF01902	IPR002761
Ribosomal_L37e	Ribosomal protein L37e	PF01907	IPR001569	GO:0003735 GO:0005622 GO:0005840 GO:0006412
DS	Deoxyhypusine synthase	PF01916	IPR002773	GO:0008612
Prefoldin_2	Prefoldin subunit	PF01920	IPR002777	GO:0006457 GO:0016272 GO:0051082
SRP19	SRP19 protein	PF01922	IPR002778	GO:0006614 GO:0008312 GO:0048500
Thi4	Thi4 family	PF01946
DUF101	Protein of unknown function DUF101	PF01951	IPR002804
tRNA_int_endo	tRNA intron endonuclease, catalytic C-terminal domain	PF01974	IPR006677	GO:0000213 GO:0006388
PTH2	Peptidyl-tRNA hydrolase PTH2	PF01981	IPR002833	GO:0004045 GO:0006412
CTP-dep_RFKase	Domain of unknown function DUF120	PF01982	IPR002834	GO:0000166 GO:0000287 GO:0008531 GO:0009398
dsDNA_bind	Double-stranded DNA-binding domain	PF01984	IPR002836	GO:0003677
TFIIE_alpha	TFIIE alpha subunit	PF02002
TRM	N2,N2-dimethylguanosine tRNA methyltransferase	PF02005	IPR002905	GO:0003723 GO:0004809 GO:0008033
SAP	SAP domain	PF02037	IPR003034	GO:0003676
K_tetra	K+ channel tetramerisation domain	PF02214	IPR003131	GO:0005249 GO:0006813 GO:0008076 GO:0016020
CDC48_N	Cell division protein 48 (CDC48), N-terminal domain	PF02359	IPR003338	GO:0005524
PMT	Dolichyl-phosphate-mannose-protein mannosyltransferase	PF02366	IPR003342	GO:0000030 GO:0006493 GO:0016020
Syja_N	SacI homology domain	PF02383	IPR002013
Met_10	Met-10+ like-protein	PF02475	IPR003402
Biotin_carb_C	Biotin carboxylase C-terminal domain	PF02785	IPR005482	GO:0016874
CPSase_L_D2	Carbamoyl-phosphate synthase L chain, ATP binding domain	PF02786	IPR005479	GO:0003824 GO:0005524 GO:0008152
ELFV_dehydrog_N	Glu/Leu/Phe/Val dehydrogenase, dimerisation domain	PF02812	IPR006097	GO:0006520 GO:0016491 GO:0055114
MIR	MIR domain	PF02815	IPR003608	GO:0016020
GARS_C	Phosphoribosylglycinamide synthetase, C domain	PF02843	IPR020560	GO:0004637 GO:0009113
GARS_N	Phosphoribosylglycinamide synthetase, N domain	PF02844	IPR020562	GO:0004637 GO:0009113
Ribonuc_red_lgC	Ribonucleotide reductase, barrel domain	PF02867	IPR000788	GO:0004748 GO:0005971 GO:0006260
Sec63	Sec63 Brl domain	PF02889	IPR004179
CDC48_2	Cell division protein 48 (CDC48), domain 2	PF02933	IPR004201	GO:0005524
HEAT	HEAT repeat	PF02985	IPR000357
Prefoldin	Prefoldin subunit	PF02996	IPR004127	GO:0006457 GO:0016272 GO:0051082
Exo70	Exo70 exocyst complex subunit	PF03081	IPR004140	GO:0000145 GO:0006887
PTPA	Phosphotyrosyl phosphate activator (PTPA) protein	PF03095	IPR004327	GO:0019211
GTP_EFTU_D2	Elongation factor Tu domain 2	PF03144	IPR004161	GO:0005525
Y_phosphatase2	Tyrosine phosphatase family	PF03162	IPR004861
LUC7	LUC7 N_terminus	PF03194	IPR004882
SART-1	SART-1 family	PF03343	IPR005011
zf-ZPR1	ZPR1 zinc-finger domain	PF03367	IPR004457	GO:0005515 GO:0008270
eRF1_1	eRF1 domain 1	PF03463	IPR005140
eRF1_2	eRF1 domain 2	PF03464	IPR005141
eRF1_3	eRF1 domain 3	PF03465	IPR005142
ATP-cone	ATP cone domain	PF03477	IPR005144
EMG1	EMG1/NEP1 methyltransferase	PF03587	IPR005304
EFG_IV	Elongation factor G, domain IV	PF03764	IPR005517	GO:0005525
CRAL_TRIO_N	CRAL/TRIO, N-terminus	PF03765	IPR008273
Vps52	Vps52 / Sac2 family	PF04129	IPR007258
Ctr	Ctr copper transporter family	PF04145	IPR007274	GO:0005375 GO:0006825 GO:0016021
Gar1	Gar1 protein RNA binding region	PF04410	IPR007504	GO:0009982 GO:0030515 GO:0031429
zf-HIT	HIT zinc finger	PF04438	IPR007529
DUF572	Family of unknown function (DUF572)	PF04502	IPR007590
RNA_pol_Rpb2_5	RNA polymerase Rpb2, domain 5	PF04567	IPR007647	GO:0003677 GO:0003899 GO:0006350
IATP	Mitochondrial ATPase inhibitor, IATP	PF04568	IPR007648	GO:0004857 GO:0005739 GO:0045980
DUF618	Protein of unknown function, DUF618	PF04818	IPR006903
Rad21_Rec8_N	N terminus of Rad21 / Rec8 like protein	PF04825	IPR006910
SNF5	SNF5 / SMARCB1 / INI1	PF04855	IPR006939	GO:0000228 GO:0006338
AAR2	AAR2 protein	PF05282	IPR007946
Chorion_3	Chorion family 3	PF05387
DCP1	Dcp1-like decapping family	PF06058	IPR010334
CTP_synth_N	CTP synthase N-terminus	PF06418	IPR017456	GO:0003883 GO:0006221
PRP1_N	PRP1 splicing factor, N-terminal	PF06424	IPR010491	GO:0000398 GO:0005634
DUF1605	Domain of unknown function (DUF1605)	PF07717	IPR011709
N2227	N2227-like protein	PF07942	IPR012901
Tom7	TOM7 family	PF08038	IPR012621	GO:0005741 GO:0006886 GO:0015450
NOSIC	NOSIC (NUC001) domain	PF08060	IPR012976
Sec39	Secretory pathway protein Sec39	PF08314	IPR013244
Miro	Miro-like protein	PF08477	IPR013684	GO:0005525 GO:0005622 GO:0007264
PRP3	pre-mRNA processing factor 3 (PRP3)	PF08572	IPR013881
MIF4G_like	MIF4G like	PF09088	IPR015172	GO:0005515 GO:0016070
MIF4G_like_2	MIF4G like	PF09090	IPR015174	GO:0005515 GO:0016070