Pfam ID
Description
Accession
Interpro ID
GO ID
Myb_DNA-binding
Myb-like DNA-binding domain
PF00249
IPR014778
Myb_DNA-binding
forms interactions with
Pfam ID
Description
Accession
Interpro ID
GO ID
Notes
Source
Myb_DNA-binding
Myb-like DNA-binding domain
PF00249
IPR014778
Amino_oxidase
Flavin containing amine oxidoreductase
PF01593
IPR002937
Rap1-DNA-bind
Rap1, DNA-binding
PF09197
IPR015280
Response_reg
Response regulator receiver domain
PF00072
IPR001789
GO:0000156
GO:0000160
GO:0006355
zf-C2H2
Zinc finger, C2H2 type
PF00096
IPR007087
GO:0005622
GO:0008270
bZIP_1
bZIP transcription factor
PF00170
IPR011616
GO:0003700
GO:0006355
GO:0043565
GO:0046983
Helicase_C
Helicase conserved C-terminal domain
PF00271
IPR001650
GO:0003676
GO:0004386
GO:0005524
BRCT
BRCA1 C Terminus (BRCT) domain
PF00533
IPR001357
GO:0005622
F-box
F-box domain
PF00646
IPR001810
Mov34
Mov34/MPN/PAD-1 family
PF01398
IPR000555
HSP20
Hsp20/alpha crystallin family
PF00011
IPR002068
Homeobox
Homeobox domain
PF00046
IPR001356
GO:0003700
GO:0006355
GO:0043565
SNF2_N
SNF2 family N-terminal domain
PF00176
IPR000330
GO:0003677
GO:0005524
DnaJ
DnaJ domain
PF00226
IPR001623
GO:0031072
TBP
Transcription factor TFIID (or TATA-binding protein, TBP)
PF00352
IPR000814
GO:0003677
GO:0003702
GO:0006355
GO:0006367
Bromodomain
Bromodomain
PF00439
IPR001487
PHD
PHD-finger
PF00628
IPR019787
BAH
BAH domain
PF01426
IPR001025
GO:0003677
RFX_DNA_binding
RFX DNA-binding domain
PF02257
IPR003150
GO:0003677
GO:0006355
TAF
TATA box binding protein associated factor (TAF)
PF02969
IPR004823
GO:0005634
GO:0006352
GO:0016986
TFIID_30kDa
Transcription initiation factor TFIID 23-30kDa subunit
PF03540
IPR003923
GO:0003702
GO:0005634
GO:0006352
SWIRM
SWIRM domain
PF04433
IPR007526
GTP_EFTU
Elongation factor Tu GTP binding domain
PF00009
IPR000795
GO:0003924
GO:0005525
fn3
Fibronectin type III domain
PF00041
IPR003961
zf-CCHC
Zinc knuckle
PF00098
IPR001878
GO:0003676
GO:0008270
Histone
Core histone H2A/H2B/H3/H4
PF00125
IPR007125
GO:0003677
Zn_clus
Fungal Zn(2)-Cys(6) binuclear cluster domain
PF00172
IPR001138
GO:0003700
GO:0005634
GO:0006355
GO:0008270
Ribosomal_L16
Ribosomal protein L16p/L10e
PF00252
IPR016180
GO:0003735
GO:0005840
GO:0006412
DEAD
DEAD/DEAH box helicase
PF00270
IPR011545
GO:0003676
GO:0005524
GO:0008026
NUDIX
NUDIX domain
PF00293
IPR000086
GO:0016787
GATA
GATA zinc finger
PF00320
IPR000679
GO:0003700
GO:0006355
GO:0008270
GO:0043565
Dynamin_N
Dynamin family
PF00350
IPR001401
GO:0003924
GO:0005525
Chromo
'chromo' (CHRromatin Organisation MOdifier) domain
PF00385
IPR000953
GO:0000785
GO:0003682
GO:0005634
GO:0006333
WD40
WD domain, G-beta repeat
PF00400
IPR019781
MutS_V
MutS domain V
PF00488
IPR000432
GO:0005524
GO:0006298
GO:0030983
HMG_box
HMG (high mobility group) box
PF00505
IPR000910
GO:0003677
GO:0005634
ZZ
Zinc finger, ZZ type
PF00569
IPR000433
GO:0008270
RNA_pol_Rpb1_2
RNA polymerase Rpb1, domain 2
PF00623
IPR000722
GO:0003677
GO:0003899
GO:0006350
EFG_C
Elongation factor G C-terminus
PF00679
IPR000640
GO:0005525
Hydrolase
haloacid dehalogenase-like hydrolase
PF00702
IPR005834
GO:0003824
GO:0008152
SET
SET domain
PF00856
IPR001214
IF-2B
Initiation factor 2 subunit family
PF01008
IPR000649
GO:0044237
Dynamin_M
Dynamin central region
PF01031
IPR000375
GO:0005525
G10
G10 protein
PF01125
IPR001748
GO:0005634
LSM
LSM domain
PF01423
IPR001163
MutS_I
MutS domain I
PF01624
IPR007695
GO:0005524
GO:0006298
GO:0030983
NTP_transf_2
Nucleotidyltransferase domain
PF01909
IPR002934
GO:0016779
SIR2
Sir2 family
PF02146
IPR003000
GO:0006342
GO:0006476
GO:0008270
GO:0016811
GO:0045449
GO:0070403
HAT
HAT (Half-A-TPR) repeat
PF02184
IPR003107
GO:0005622
GO:0006396
GED
Dynamin GTPase effector domain
PF02212
IPR003130
GO:0003924
GO:0005525
PAH
Paired amphipathic helix repeat
PF02671
IPR003822
GO:0005634
GO:0006355
CDC45
CDC45-like protein
PF02724
IPR003874
GO:0006270
AIRS_C
AIR synthase related protein, C-terminal domain
PF02769
IPR010918
GARS_C
Phosphoribosylglycinamide synthetase, C domain
PF02843
IPR020560
GO:0004637
GO:0009113
GARS_N
Phosphoribosylglycinamide synthetase, N domain
PF02844
IPR020562
GO:0004637
GO:0009113
zf-BED
BED zinc finger
PF02892
IPR003656
GO:0003677
TFIID_20kDa
Transcription initiation factor TFIID subunit A
PF03847
IPR003228
GO:0005669
GO:0006352
GO:0016986
DUF348
Domain of unknown function (DUF348)
PF03990
IPR007137
HA2
Helicase associated domain (HA2)
PF04408
IPR007502
GO:0004386
DSS1_SEM1
DSS1/SEM1 family
PF05160
IPR007834
Pkinase_Tyr
Protein tyrosine kinase
PF07714
IPR001245
GO:0004672
GO:0005524
GO:0006468
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Copyright © 2007, Raghavachari et al.
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