Pfam ID |
Description |
Accession |
Interpro ID |
GO ID |
Notes |
Source |
HSP90 |
Hsp90 protein |
PF00183 |
IPR020576 |
|
 |
|
DNA_gyraseB |
DNA gyrase B |
PF00204 |
IPR013506 |
|
 |
|
Ribosomal_S13 |
Ribosomal protein S13/S18 |
PF00416 |
IPR001892 |
|
 |
|
HisKA |
His Kinase A (phosphoacceptor) domain |
PF00512 |
IPR003661 |
|
 |
|
DNA_mis_repair |
DNA mismatch repair protein, C-terminal domain |
PF01119 |
IPR013507 |
|
 |
|
CheW |
CheW-like domain |
PF01584 |
IPR002545 |
|
 |
|
STAS |
STAS domain |
PF01740 |
IPR002645 |
|
 |
|
HATPase_c |
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase |
PF02518 |
IPR003594 |
|
 |
|
H-kinase_dim |
Signal transducing histidine kinase, homodimeric domain |
PF02895 |
IPR004105 |
|
 |
|
Sigma70_r3 |
Sigma-70 region 3 |
PF04539 |
IPR007624 |
|
 |
|
Sigma70_r2 |
Sigma-70 region 2 |
PF04542 |
IPR007627 |
|
 |
|
CHORD |
CHORD |
PF04968 |
IPR007051 |
|
 |
|
CS |
CS domain |
PF04969 |
IPR017447 |
|
 |
|
FbpA |
Fibronectin-binding protein A N-terminus (FbpA) |
PF05833 |
IPR008616 |
|
 |
|
HisKA_3 |
Histidine kinase |
PF07730 |
IPR011712 |
|
 |
|
CDC37_M |
Cdc37 Hsp90 binding domain |
PF08565 |
IPR013874 |
|
 |
|
Topo-VIb_trans |
Topoisomerase VI B subunit, transducer |
PF09239 |
IPR015320 |
|
 |
|
BCDHK_Adom3 |
Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase |
PF10436 |
IPR018955 |
|
 |
|
HSP70 |
Hsp70 protein |
PF00012 |
IPR013126 |
|
 |
|
Response_reg |
Response regulator receiver domain |
PF00072 |
IPR001789 |
|
 |
|
HTH_AraC |
Bacterial regulatory helix-turn-helix proteins, AraC family |
PF00165 |
IPR000005 |
|
 |
|
ubiquitin |
Ubiquitin family |
PF00240 |
IPR000626 |
|
 |
|
TPR_1 |
Tetratricopeptide repeat |
PF00515 |
IPR001440 |
|
 |
|
Usp |
Universal stress protein family |
PF00582 |
IPR006016 |
|
 |
|
HAMP |
HAMP domain |
PF00672 |
IPR003660 |
|
 |
|
PAS |
PAS fold |
PF00989 |
IPR013767 |
|
 |
|
GAF |
GAF domain |
PF01590 |
IPR003018 |
|
 |
|
MutS_I |
MutS domain I |
PF01624 |
IPR007695 |
|
 |
|
Hpt |
Hpt domain |
PF01627 |
IPR008207 |
|
 |
|
Toprim |
Toprim domain |
PF01751 |
IPR006171 |
|
 |
|
Pkinase |
Protein kinase domain |
PF00069 |
IPR017442 |
|
 |
|
Pro_isomerase |
Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD |
PF00160 |
IPR002130 |
|
 |
|
DEAD |
DEAD/DEAH box helicase |
PF00270 |
IPR011545 |
|
 |
|
MutS_V |
MutS domain V |
PF00488 |
IPR000432 |
|
 |
|
HHH |
Helix-hairpin-helix motif |
PF00633 |
IPR000445 |
|
 |
|
PCNA_N |
Proliferating cell nuclear antigen, N-terminal domain |
PF00705 |
IPR022648 |
|
 |
|
LSM |
LSM domain |
PF01423 |
IPR001163 |
|
 |
|
PCNA_C |
Proliferating cell nuclear antigen, C-terminal domain |
PF02747 |
IPR022649 |
|
 |
|
MutS_IV |
MutS family domain IV |
PF05190 |
IPR007861 |
|
 |
|
MutS_III |
MutS domain III |
PF05192 |
IPR007696 |
|
 |
|
NOP5NT |
NOP5NT (NUC127) domain |
PF08156 |
IPR012974 |
|
 |
|
SH3_1 |
SH3 domain |
PF00018 |
IPR001452 |
|
 |
|
Arf |
ADP-ribosylation factor family |
PF00025 |
IPR006689 |
|
 |
|
Ras |
Ras family |
PF00071 |
IPR013753 |
|
 |
|
RRM_1 |
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) |
PF00076 |
IPR000504 |
|
 |
|
zf-C3HC4 |
Zinc finger, C3HC4 type (RING finger) |
PF00097 |
IPR018957 |
|
 |
|
Hormone_recep |
Ligand-binding domain of nuclear hormone receptor |
PF00104 |
IPR000536 |
|
 |
|
Metallophos |
Calcineurin-like phosphoesterase |
PF00149 |
IPR004843 |
|
 |
|
Mito_carr |
Mitochondrial carrier protein |
PF00153 |
IPR018108 |
|
 |
|
Iso_dh |
Isocitrate/isopropylmalate dehydrogenase |
PF00180 |
IPR001804 |
|
 |
|
ATP-synt |
ATP synthase |
PF00231 |
IPR000131 |
|
 |
|
Helicase_C |
Helicase conserved C-terminal domain |
PF00271 |
IPR001650 |
|
 |
|
EPSP_synthase |
EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) |
PF00275 |
IPR001986 |
|
 |
|
TBP |
Transcription factor TFIID (or TATA-binding protein, TBP) |
PF00352 |
IPR000814 |
|
 |
|
WD40 |
WD domain, G-beta repeat |
PF00400 |
IPR019781 |
|
 |
|
SBP_bac_3 |
Bacterial extracellular solute-binding proteins, family 3 |
PF00497 |
IPR001638 |
|
 |
|
AMP-binding |
AMP-binding enzyme |
PF00501 |
IPR000873 |
|
 |
|
G-alpha |
G-protein alpha subunit |
PF00503 |
IPR001019 |
|
 |
|
HMG_box |
HMG (high mobility group) box |
PF00505 |
IPR000910 |
|
 |
|
DNA_topoisoIV |
DNA gyrase/topoisomerase IV, subunit A |
PF00521 |
IPR002205 |
|
 |
|
RasGEF |
RasGEF domain |
PF00617 |
IPR001895 |
|
 |
|
RasGEF_N |
Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal motif |
PF00618 |
IPR000651 |
|
 |
|
E1_dh |
Dehydrogenase E1 component |
PF00676 |
IPR001017 |
|
 |
|
Septin |
Septin |
PF00735 |
IPR000038 |
|
 |
|
XPG_N |
XPG N-terminal domain |
PF00752 |
IPR006085 |
|
 |
|
Syntaxin |
Syntaxin |
PF00804 |
IPR006011 |
|
 |
|
PUF |
Pumilio-family RNA binding repeat |
PF00806 |
IPR001313 |
|
 |
|
XPG_I |
XPG I-region |
PF00867 |
IPR006086 |
|
 |
|
SKI |
Shikimate kinase |
PF01202 |
IPR000623 |
|
 |
|
CK_II_beta |
Casein kinase II regulatory subunit |
PF01214 |
IPR000704 |
|
 |
|
Mov34 |
Mov34/MPN/PAD-1 family |
PF01398 |
IPR000555 |
|
 |
|
Skp1 |
Skp1 family, dimerisation domain |
PF01466 |
IPR016072 |
|
 |
|
DHquinase_I |
Type I 3-dehydroquinase |
PF01487 |
IPR001381 |
|
 |
|
Shikimate_DH |
Shikimate / quinate 5-dehydrogenase |
PF01488 |
IPR006151 |
|
 |
|
DHQ_synthase |
3-dehydroquinate synthase |
PF01761 |
IPR002658 |
|
 |
|
HNH |
HNH endonuclease |
PF01844 |
IPR002711 |
|
 |
|
MMR_HSR1 |
GTPase of unknown function |
PF01926 |
IPR002917 |
|
 |
|
HD |
HD domain |
PF01966 |
IPR006674 |
|
 |
|
TRM |
N2,N2-dimethylguanosine tRNA methyltransferase |
PF02005 |
IPR002905 |
|
 |
|
KdpD |
Osmosensitive K+ channel His kinase sensor domain |
PF02702 |
IPR003852 |
|
 |
|
TRAPP |
Transport protein particle (TRAPP) component |
PF04051 |
IPR007194 |
|
 |
|
MutS_II |
MutS domain II |
PF05188 |
IPR007860 |
|
 |
|
YchF-GTPase_C |
Protein of unknown function (DUF933) |
PF06071 |
IPR013029 |
|
 |
|
zf-CW |
CW-type Zinc Finger |
PF07496 |
IPR011124 |
|
 |
|
SAM_2 |
SAM domain (Sterile alpha motif) |
PF07647 |
IPR011510 |
|
 |
|
Nop53 |
Nop53 (60S ribosomal biogenesis) |
PF07767 |
IPR011687 |
|
 |
|
NOSIC |
NOSIC (NUC001) domain |
PF08060 |
IPR012976 |
|
 |
|
SRP72 |
SRP72 RNA-binding domain |
PF08492 |
IPR013699 |
|
 |
|
Aha1_N |
Activator of Hsp90 ATPase, N-terminal |
PF09229 |
IPR015310 |
|
 |
|