ubiquitin

• Pfam ID: ubiquitin
• Description: Ubiquitin family
• Accession: PF00240
• Interpro ID: IPR000626

ubiquitin forms interactions with

Pfam ID	Description	Accession	Interpro ID	GO ID	Notes	Source
SH3_1	SH3 domain	PF00018	IPR001452
UQ_con	Ubiquitin-conjugating enzyme	PF00179	IPR000608	GO:0019787 GO:0043687 GO:0051246
ubiquitin	Ubiquitin family	PF00240	IPR000626
UCH	Ubiquitin carboxyl-terminal hydrolase	PF00443	IPR001394	GO:0004221 GO:0006511
UBA	UBA/TS-N domain	PF00627	IPR000449
HECT	HECT-domain (ubiquitin-transferase)	PF00632	IPR000569	GO:0005622 GO:0006464 GO:0016881
zf-RanBP	Zn-finger in Ran binding protein and others	PF00641	IPR001876	GO:0005622 GO:0008270
VHS	VHS domain	PF00790	IPR002014	GO:0006886
ThiF	ThiF family	PF00899	IPR000594	GO:0003824
Peptidase_C12	Ubiquitin carboxyl-terminal hydrolase, family 1	PF01088	IPR001578	GO:0004221 GO:0005622 GO:0006511
Mov34	Mov34/MPN/PAD-1 family	PF01398	IPR000555
zf-A20	A20-like zinc finger	PF01754	IPR002653	GO:0003677 GO:0008270
Josephin	Josephin	PF02099	IPR006155
UBACT	Repeat in ubiquitin-activating (UBA) protein	PF02134	IPR000127	GO:0005524 GO:0006464 GO:0008641
zf-UBP	Zn-finger in ubiquitin-hydrolases and other protein	PF02148	IPR001607	GO:0008270
BAG	BAG domain	PF02179	IPR003103	GO:0005515 GO:0006915
OTU	OTU-like cysteine protease	PF02338	IPR003323
PCNA_C	Proliferating cell nuclear antigen, C-terminal domain	PF02747	IPR022649	GO:0003677 GO:0006275 GO:0030337 GO:0043626
UIM	Ubiquitin interaction motif	PF02809	IPR003903
CUE	CUE domain	PF02845	IPR003892
Peptidase_C48	Ulp1 protease family, C-terminal catalytic domain	PF02902	IPR003653	GO:0006508 GO:0008234
GAT	GAT domain	PF03127	IPR004152	GO:0005622 GO:0006886
UDG	Uracil DNA glycosylase superfamily	PF03167	IPR005122
Skp1_POZ	Skp1 family, tetramerisation domain	PF03931	IPR016073	GO:0006511
ARM_1	Adhesion regulating molecule conserved region	PF04683	IPR006773	GO:0005634 GO:0005737
Herpes_teg_N	Herpesvirus tegument protein, N-terminal conserved region	PF04843	IPR006928
UEV	UEV domain	PF05743	IPR008883	GO:0006464 GO:0015031
SH3_2	Variant SH3 domain	PF07653	IPR011511
V-set	Immunoglobulin V-set domain	PF07686	IPR013106
PFU	PFU (PLAA family ubiquitin binding)	PF09070	IPR015155
XPC-binding	XPC-binding domain	PF09280	IPR015360	GO:0003684 GO:0006289 GO:0043161
UBA_e1_C	Ubiquitin-activating enzyme e1 C-terminal domain	PF09358	IPR018965
Cullin_Nedd8	Cullin protein neddylation domain	PF10557	IPR019559	GO:0006511 GO:0031461 GO:0031625
UBA_e1_thiolCys	Ubiquitin-activating enzyme active site	PF10585	IPR019572
AAA	ATPase family associated with various cellular activities (AAA)	PF00004	IPR003959	GO:0005524
Pkinase	Protein kinase domain	PF00069	IPR017442	GO:0004672 GO:0005524 GO:0006468
RVP	Retroviral aspartyl protease	PF00077	IPR018061
zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	PF00097	IPR018957
2-oxoacid_dh	2-oxoacid dehydrogenases acyltransferase (catalytic domain)	PF00198	IPR001078	GO:0008152 GO:0008415
Cullin	Cullin family	PF00888	IPR001373	GO:0006511 GO:0031461 GO:0031625
Skp1	Skp1 family, dimerisation domain	PF01466	IPR016072	GO:0006511
DUF77	Domain of unknown function DUF77	PF01910	IPR002767
HATPase_c	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	PF02518	IPR003594	GO:0005524
Pro_isomerase	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD	PF00160	IPR002130	GO:0003755 GO:0006457
DNA_gyraseB	DNA gyrase B	PF00204	IPR013506	GO:0003677 GO:0003918 GO:0005524 GO:0005694 GO:0006265
WD40	WD domain, G-beta repeat	PF00400	IPR019781
FHA	FHA domain	PF00498	IPR000253
G-alpha	G-protein alpha subunit	PF00503	IPR001019	GO:0004871 GO:0007186 GO:0019001
DNA_topoisoIV	DNA gyrase/topoisomerase IV, subunit A	PF00521	IPR002205	GO:0003677 GO:0003918 GO:0005524 GO:0005694 GO:0006265
F-box	F-box domain	PF00646	IPR001810
CAP_GLY	CAP-Gly domain	PF01302	IPR000938
FYVE	FYVE zinc finger	PF01363	IPR000306
PCI	PCI domain	PF01399	IPR000717
IBB	Importin beta binding domain	PF01749	IPR002652	GO:0005634 GO:0005643 GO:0005737 GO:0006606 GO:0006886 GO:0008565
ArsA_ATPase	Anion-transporting ATPase	PF02374
VPS28	VPS28 protein	PF03997	IPR007143
SOH1	SOH1	PF05669	IPR008831	GO:0016455 GO:0016592 GO:0045449
HSP70	Hsp70 protein	PF00012	IPR013126
Ras	Ras family	PF00071	IPR013753
Hormone_recep	Ligand-binding domain of nuclear hormone receptor	PF00104	IPR000536	GO:0003700 GO:0003707 GO:0005634 GO:0006355
zf-C4	Zinc finger, C4 type (two domains)	PF00105	IPR001628	GO:0003700 GO:0005634 GO:0006355 GO:0008270 GO:0043565
Histone	Core histone H2A/H2B/H3/H4	PF00125	IPR007125	GO:0003677
Cyclin_N	Cyclin, N-terminal domain	PF00134	IPR006671
Mito_carr	Mitochondrial carrier protein	PF00153	IPR018108
Cyt-b5	Cytochrome b5-like Heme/Steroid binding domain	PF00173	IPR001199	GO:0020037
SNF2_N	SNF2 family N-terminal domain	PF00176	IPR000330	GO:0003677 GO:0005524
HSP90	Hsp90 protein	PF00183	IPR020576
Proteasome	Proteasome A-type and B-type	PF00227	IPR001353	GO:0004298 GO:0005839 GO:0051603
Fork_head	Fork head domain	PF00250	IPR001766	GO:0003700 GO:0005634 GO:0006355 GO:0043565
Helicase_C	Helicase conserved C-terminal domain	PF00271	IPR001650	GO:0003676 GO:0004386 GO:0005524
PAX	'Paired box' domain	PF00292	IPR001523	GO:0003677 GO:0045449
Ribosomal_L6	Ribosomal protein L6	PF00347	IPR020040	GO:0003735 GO:0005840 GO:0006412 GO:0019843
Hexokinase_1	Hexokinase	PF00349	IPR022672	GO:0005524 GO:0005975 GO:0016773
Biotin_lipoyl	Biotin-requiring enzyme	PF00364	IPR000089
TFIIB	Transcription factor TFIIB repeat	PF00382	IPR013150	GO:0003743 GO:0005515 GO:0006413
Ribosomal_60s	60s Acidic ribosomal protein	PF00428	IPR001813	GO:0003735 GO:0005622 GO:0005840 GO:0006414
PI3_PI4_kinase	Phosphatidylinositol 3- and 4-kinase	PF00454	IPR000403	GO:0016773
KOW	KOW motif	PF00467	IPR005824
PRK	Phosphoribulokinase / Uridine kinase family	PF00485	IPR006083	GO:0005524 GO:0008152 GO:0016301
Arm	Armadillo/beta-catenin-like repeat	PF00514	IPR000225
LRR_1	Leucine Rich Repeat	PF00560	IPR001611	GO:0005515
UvrD-helicase	UvrD/REP helicase	PF00580	IPR000212	GO:0003677 GO:0004003 GO:0005524 GO:0006281
DEP	Domain found in Dishevelled, Egl-10, and Pleckstrin	PF00610	IPR000591	GO:0023034
PI3Ka	Phosphoinositide 3-kinase family, accessory domain (PIK domain)	PF00613	IPR001263	GO:0004428
RNA_pol_Rpb1_2	RNA polymerase Rpb1, domain 2	PF00623	IPR000722	GO:0003677 GO:0003899 GO:0006350
BTB	BTB/POZ domain	PF00651	IPR013069	GO:0005515
PI3K_C2	Phosphoinositide 3-kinase C2	PF00792	IPR002420	GO:0005942 GO:0016303 GO:0046854 GO:0048015
PI3K_rbd	PI3-kinase family, ras-binding domain	PF00794	IPR000341	GO:0005942 GO:0016303
PUF	Pumilio-family RNA binding repeat	PF00806	IPR001313	GO:0003723
P53	P53 DNA-binding domain	PF00870	IPR011615	GO:0003677 GO:0003700 GO:0005634 GO:0006355
TYA	TYA transposon protein	PF01021	IPR015820	GO:0003723 GO:0005737
Dynein_light	Dynein light chain type 1	PF01221	IPR001372	GO:0003777 GO:0005875 GO:0007017
eIF-5a	Eukaryotic initiation factor 5A hypusine, DNA-binding OB fold	PF01287	IPR020189	GO:0003723 GO:0003746 GO:0006452 GO:0043022 GO:0045901 GO:0045905
BolA	BolA-like protein	PF01722	IPR002634
Surp	Surp module	PF01805	IPR000061	GO:0003723 GO:0006396
PC_rep	Proteasome/cyclosome repeat	PF01851	IPR002015
Prefoldin_2	Prefoldin subunit	PF01920	IPR002777	GO:0006457 GO:0016272 GO:0051082
vATP-synt_E	ATP synthase (E/31 kDa) subunit	PF01991	IPR002842	GO:0015986 GO:0033178 GO:0046961
SAP	SAP domain	PF02037	IPR003034	GO:0003676
CDC48_N	Cell division protein 48 (CDC48), N-terminal domain	PF02359	IPR003338	GO:0005524
ERCC4	ERCC4 domain	PF02732	IPR006166	GO:0003677 GO:0004518 GO:0005515 GO:0006259
zf-MIZ	MIZ/SP-RING zinc finger	PF02891	IPR004181	GO:0008270
Cyclin_C	Cyclin, C-terminal domain	PF02984	IPR004367	GO:0005634
BAR	BAR domain	PF03114	IPR004148	GO:0005515 GO:0005737
V-ATPase_C	V-ATPase subunit C	PF03223	IPR004907	GO:0015986 GO:0016820 GO:0033180
Exo_endo_phos	Endonuclease/Exonuclease/phosphatase family	PF03372	IPR005135
Hexokinase_2	Hexokinase	PF03727	IPR022673	GO:0005524 GO:0005975 GO:0016773
BSD	BSD domain	PF03909	IPR005607
DUF336	Domain of unknown function (DUF336)	PF03928	IPR005624
DER1	Der1-like family	PF04511	IPR007599
Pex14_N	Peroxisomal membrane anchor protein (Pex14p) conserved region	PF04695	IPR006785	GO:0005777 GO:0016020
Tyr-DNA_phospho	Tyrosyl-DNA phosphodiesterase	PF06087	IPR010347	GO:0005634 GO:0006281 GO:0008081
AAA_2	ATPase family associated with various cellular activities (AAA)	PF07724	IPR013093	GO:0005524
Red1	Rec10 / Red1	PF07964	IPR012491	GO:0007059 GO:0007131
TFIIB_Zn_Ribbon	TFIIB zinc-binding	PF08271	IPR013137	GO:0008270 GO:0045449
ATG16	Autophagy protein 16 (ATG16)	PF08614	IPR013923
zf-LYAR	LYAR-type C2HC zinc finger	PF08790	IPR014898
Aha1_N	Activator of Hsp90 ATPase, N-terminal	PF09229	IPR015310	GO:0001671 GO:0005737 GO:0051087