Pfam ID Description Accession Interpro ID GO ID
Proteasome Proteasome A-type and B-type PF00227 IPR001353
GO:0004298
GO:0005839
GO:0051603



Proteasome forms interactions with

Pfam ID Description Accession Interpro ID GO ID Notes Source
AAA ATPase family associated with various cellular activities (AAA) PF00004 IPR003959
GO:0005524
 PDB 3DID GPE RDFF INSITE DOMAINGA
Proteasome Proteasome A-type and B-type PF00227 IPR001353
GO:0004298
GO:0005839
GO:0051603
 PDB IPFAM 3DID ME RCDP DPEA PE GPE DIPD RDFF KGIDDI INSITE DOMAINGA
AAA_2 ATPase family associated with various cellular activities (AAA) PF07724 IPR013093
GO:0005524
 PDB IPFAM 3DID
ClpB_D2-small C-terminal, D2-small domain, of ClpB protein PF10431 IPR019489
PDB 3DID
chaperone_DMP 20S proteasome chaperone PF10448 IPR018854
PDB 3DID
Proteasome_A_N Proteasome subunit A N-terminal signature PF10584 IPR000426
GO:0004175
GO:0006511
GO:0019773
 PDB 3DID
efhand EF hand PF00036 IPR018248
HCP RDFF INSITE DOMAINGA
Metallophos Calcineurin-like phosphoesterase PF00149 IPR004843
GO:0016787
 HCP RCDP GPE DIPD RDFF
Catalase Catalase PF00199 IPR018028
HCP RCDP RDFF INSITE
UCH Ubiquitin carboxyl-terminal hydrolase PF00443 IPR001394
GO:0004221
GO:0006511
 HCP ME RDFF DOMAINGA
Peptidase_C12 Ubiquitin carboxyl-terminal hydrolase, family 1 PF01088 IPR001578
GO:0004221
GO:0005622
GO:0006511
 HCP ME
SUI1 Translation initiation factor SUI1 PF01253 IPR001950
GO:0003743
GO:0006413
 HCP RCDP DPEA PE INSITE
Mov34 Mov34/MPN/PAD-1 family PF01398 IPR000555
HCP PE INSITE DOMAINGA
PCI PCI domain PF01399 IPR000717
HCP PE GPE RDFF INSITE DOMAINGA
PC_rep Proteasome/cyclosome repeat PF01851 IPR002015
HCP PE RDFF DOMAINGA
UMP1 Proteasome maturation factor UMP1 PF05348 IPR008012
HCP DPEA PE GPE INSITE DOMAINGA
Ank Ankyrin repeat PF00023 IPR002110
MCP INSITE DOMAINGA
Pkinase Protein kinase domain PF00069 IPR017442
GO:0004672
GO:0005524
GO:0006468
 MCP RCDP PE RDFF
zf-C2H2 Zinc finger, C2H2 type PF00096 IPR007087
GO:0005622
GO:0008270
 MCP PE RDFF INSITE
Cpn10 Chaperonin 10 Kd subunit PF00166 IPR020818
GO:0005737
GO:0006457
 MCP RCDP INSITE
PGAM Phosphoglycerate mutase family PF00300 IPR013078
MCP PVALUE RDFF
GATA GATA zinc finger PF00320 IPR000679
GO:0003700
GO:0006355
GO:0008270
GO:0043565
 MCP PE RDFF
PDZ PDZ domain (Also known as DHR or GLGF) PF00595 IPR001478
GO:0005515
 MCP RDFF INSITE
Cullin Cullin family PF00888 IPR001373
GO:0006511
GO:0031461
GO:0031625
 MCP DPEA PE RDFF
RNA_pol_N RNA polymerases N / 8 kDa subunit PF01194 IPR000268
GO:0003677
GO:0003899
GO:0006351
 MCP INSITE DIMA
6PF2K 6-phosphofructo-2-kinase PF01591 IPR013079
GO:0003873
GO:0005524
GO:0006000
 MCP RDFF INSITE
ACT ACT domain PF01842 IPR002912
GO:0008152
GO:0016597
 MCP PE RDFF
Nucleoporin Non-repetitive/WGA-negative nucleoporin PF03177 IPR007187
MCP DPEA PE INSITE
FTR1 Iron permease FTR1 family PF03239 IPR004923
GO:0016020
GO:0055085
 MCP DPEA PE INSITE
Anp1 Anp1 PF03452 IPR005109
MCP DPEA PE INSITE
Cystatin Cystatin domain PF00031 IPR000010
GO:0004869
 LCP DPEA PE
Homeobox Homeobox domain PF00046 IPR001356
GO:0003700
GO:0006355
GO:0043565
 LCP INSITE
Lectin_C Lectin C-type domain PF00059 IPR001304
GO:0005488
 LCP PE
Trypsin Trypsin PF00089 IPR001254
GO:0004252
GO:0006508
 LCP DPEA
Peptidase_C1 Papain family cysteine protease PF00112 IPR000668
GO:0006508
GO:0008234
 LCP PE
Iso_dh Isocitrate/isopropylmalate dehydrogenase PF00180 IPR001804
GO:0000287
GO:0016616
GO:0051287
GO:0055114
 LCP INSITE
Kinesin Kinesin motor domain PF00225 IPR001752
GO:0003777
GO:0005524
GO:0007018
 LCP INSITE
ubiquitin Ubiquitin family PF00240 IPR000626
LCP RDFF
FKBP_C FKBP-type peptidyl-prolyl cis-trans isomerase PF00254 IPR001179
GO:0006457
 LCP PE
Helicase_C Helicase conserved C-terminal domain PF00271 IPR001650
GO:0003676
GO:0004386
GO:0005524
 LCP RCDP
CH Calponin homology (CH) domain PF00307 IPR001715
LCP PE
TBP Transcription factor TFIID (or TATA-binding protein, TBP) PF00352 IPR000814
GO:0003677
GO:0003702
GO:0006355
GO:0006367
 LCP DIMA
TFIIB Transcription factor TFIIB repeat PF00382 IPR013150
GO:0003743
GO:0005515
GO:0006413
 LCP DIMA
Ribosomal_60s 60s Acidic ribosomal protein PF00428 IPR001813
GO:0003735
GO:0005622
GO:0005840
GO:0006414
 LCP DIMA
Bromodomain Bromodomain PF00439 IPR001487
LCP DOMAINGA
MCM MCM2/3/5 family PF00493 IPR001208
GO:0003677
GO:0005524
GO:0006260
 LCP DIMA
ZZ Zinc finger, ZZ type PF00569 IPR000433
GO:0008270
 LCP PE
UvrD-helicase UvrD/REP helicase PF00580 IPR000212
GO:0003677
GO:0004003
GO:0005524
GO:0006281
 LCP INSITE
Rhodanese Rhodanese-like domain PF00581 IPR001763
LCP RDFF
Acetyltransf_1 Acetyltransferase (GNAT) family PF00583 IPR022610
LCP INSITE
UBA UBA/TS-N domain PF00627 IPR000449
LCP PVALUE
Copper-fist Copper fist DNA binding domain PF00649 IPR001083
GO:0003677
GO:0003700
GO:0005507
GO:0005634
GO:0006355
 LCP INSITE
Hydrolase haloacid dehalogenase-like hydrolase PF00702 IPR005834
GO:0003824
GO:0008152
 LCP INSITE
EF1_GNE EF-1 guanine nucleotide exchange domain PF00736 IPR014038
GO:0003746
GO:0005853
GO:0006414
 LCP DIMA
XPG_N XPG N-terminal domain PF00752 IPR006085
GO:0004518
GO:0006281
 LCP DIMA
Ribosomal_L15e Ribosomal L15 PF00827 IPR000439
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
Ribosomal_L39 Ribosomal L39 protein PF00832 IPR000077
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
XPG_I XPG I-region PF00867 IPR006086
GO:0004518
GO:0006281
 LCP DIMA
Innexin Innexin PF00876 IPR000990
GO:0005921
 LCP DPEA PE
Ribosomal_S4e Ribosomal family S4e PF00900 IPR013845
LCP DIMA
Ribosomal_L44 Ribosomal protein L44 PF00935 IPR000552
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
Ribosomal_S3Ae Ribosomal S3Ae family PF01015 IPR001593
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
Ribosomal_S19e Ribosomal protein S19e PF01090 IPR001266
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
Ribosomal_S6e Ribosomal protein S6e PF01092 IPR001377
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
TFIIS_C Transcription factor S-II (TFIIS) PF01096 IPR001222
GO:0003676
GO:0008270
GO:0030528
GO:0045449
 LCP DIMA
IU_nuc_hydro Inosine-uridine preferring nucleoside hydrolase PF01156 IPR001910
LCP INSITE
Ribosomal_L21e Ribosomal protein L21e PF01157 IPR001147
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
ATP_bind_3 PP-loop family PF01171 IPR011063
LCP DIMA
SBDS Shwachman-Bodian-Diamond syndrome (SBDS) protein PF01172 IPR019783
LCP DIMA
eIF-1a Translation initiation factor 1A / IF-1 PF01176 IPR006196
GO:0003723
GO:0003743
GO:0006413
 LCP DIMA
RNA_pol_Rpb5_C RNA polymerase Rpb5, C-terminal domain PF01191 IPR000783
GO:0003677
GO:0003899
GO:0006350
 LCP DIMA
Ribosomal_L31e Ribosomal protein L31e PF01198 IPR000054
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
Ribosomal_S28e Ribosomal protein S28e PF01200 IPR000289
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
Ribosomal_S8e Ribosomal protein S8e PF01201 IPR022309
LCP DIMA
Clat_adaptor_s Clathrin adaptor complex small chain PF01217
LCP INSITE
Ribosomal_L24e Ribosomal protein L24e PF01246 IPR000988
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
Fibrillarin Fibrillarin PF01269 IPR000692
GO:0003723
GO:0006364
GO:0008033
GO:0008168
 LCP DIMA
Ribosomal_L19e Ribosomal protein L19e PF01280 IPR000196
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
LSM LSM domain PF01423 IPR001163
LCP DIMA
Ribosomal_S27 Ribosomal protein S27a PF01599 IPR002906
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
Ribosomal_L32e Ribosomal protein L32 PF01655 IPR001515
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
Ribosomal_S27e Ribosomal protein S27 PF01667 IPR000592
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
UPF0057 Uncharacterized protein family UPF0057 PF01679 IPR000612
GO:0016021
 LCP DPEA PE
Ribosomal_L37ae Ribosomal L37ae protein family PF01780 IPR002674
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
DUF35 Domain of unknown function DUF35 PF01796 IPR002878
LCP DIMA
Nop Putative snoRNA binding domain PF01798 IPR002687
LCP DIMA
DUF46 Putative integral membrane protein DUF46 PF01864 IPR002726
LCP DIMA
Diphthamide_syn Putative diphthamide synthesis protein PF01866 IPR002728
LCP DIMA
AMMECR1 AMMECR1 PF01871 IPR002733
LCP DIMA
eIF-5_eIF-2B Domain found in IF2B/IF5 PF01873 IPR002735
GO:0003743
GO:0006413
 LCP DIMA
DNA_primase_S Eukaryotic and archaeal DNA primase small subunit PF01896 IPR002755
GO:0003896
GO:0006269
 LCP DIMA
ATP_bind_4 ATP-binding region PF01902 IPR002761
LCP DIMA
Ribosomal_L37e Ribosomal protein L37e PF01907 IPR001569
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
eIF-6 eIF-6 family PF01912 IPR002769
GO:0042256
GO:0043022
 LCP DIMA
DS Deoxyhypusine synthase PF01916 IPR002773
GO:0008612
 LCP DIMA
Prefoldin_2 Prefoldin subunit PF01920 IPR002777
GO:0006457
GO:0016272
GO:0051082
 LCP DIMA
SRP19 SRP19 protein PF01922 IPR002778
GO:0006614
GO:0008312
GO:0048500
 LCP DIMA
Thi4 Thi4 family PF01946
LCP DIMA
tRNA_int_endo tRNA intron endonuclease, catalytic C-terminal domain PF01974 IPR006677
GO:0000213
GO:0006388
 LCP DIMA
PTH2 Peptidyl-tRNA hydrolase PTH2 PF01981 IPR002833
GO:0004045
GO:0006412
 LCP DIMA
CTP-dep_RFKase Domain of unknown function DUF120 PF01982 IPR002834
GO:0000166
GO:0000287
GO:0008531
GO:0009398
 LCP DIMA
dsDNA_bind Double-stranded DNA-binding domain PF01984 IPR002836
GO:0003677
 LCP DIMA
TFIIE_alpha TFIIE alpha subunit PF02002
LCP DIMA
TRM N2,N2-dimethylguanosine tRNA methyltransferase PF02005 IPR002905
GO:0003723
GO:0004809
GO:0008033
 LCP DIMA
RNA_POL_M_15KD RNA polymerases M/15 Kd subunit PF02150 IPR001529
GO:0003677
GO:0003899
GO:0006350
 LCP DIMA
Peptidase_M50 Peptidase family M50 PF02163 IPR008915
GO:0004222
GO:0006508
 LCP DIMA
CDC48_N Cell division protein 48 (CDC48), N-terminal domain PF02359 IPR003338
GO:0005524
 LCP DIMA
Met_10 Met-10+ like-protein PF02475 IPR003402
LCP DIMA
ERCC4 ERCC4 domain PF02732 IPR006166
GO:0003677
GO:0004518
GO:0005515
GO:0006259
 LCP DIMA
Ku Ku70/Ku80 beta-barrel domain PF02735 IPR006164
GO:0003677
GO:0004003
GO:0006303
 LCP RDFF
2-Hacid_dh_C D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PF02826 IPR006140
GO:0016616
GO:0048037
 LCP RDFF
Peptidase_C48 Ulp1 protease family, C-terminal catalytic domain PF02902 IPR003653
GO:0006508
GO:0008234
 LCP INSITE
CDC48_2 Cell division protein 48 (CDC48), domain 2 PF02933 IPR004201
GO:0005524
 LCP DIMA
Prefoldin Prefoldin subunit PF02996 IPR004127
GO:0006457
GO:0016272
GO:0051082
 LCP DIMA
Robl_LC7 Roadblock/LC7 domain PF03259 IPR004942
LCP DPEA PE
zf-ZPR1 ZPR1 zinc-finger domain PF03367 IPR004457
GO:0005515
GO:0008270
 LCP DIMA
SAC3_GANP SAC3/GANP/Nin1/mts3/eIF-3 p25 family PF03399 IPR005062
LCP INSITE
eRF1_1 eRF1 domain 1 PF03463 IPR005140
LCP DIMA
eRF1_2 eRF1 domain 2 PF03464 IPR005141
LCP DIMA
eRF1_3 eRF1 domain 3 PF03465 IPR005142
LCP DIMA
EMG1 EMG1/NEP1 methyltransferase PF03587 IPR005304
LCP DIMA
FTZ Fushi tarazu (FTZ), N-terminal region PF03867 IPR005567
LCP DPEA
Nucleoporin2 Nucleoporin autopeptidase PF04096 IPR007230
GO:0005643
GO:0006810
 LCP INSITE
Rft-1 Rft protein PF04506 IPR007594
GO:0005319
GO:0006869
GO:0016021
 LCP INSITE
Vps16_N Vps16, N-terminal region PF04841 IPR006926
GO:0005737
GO:0006886
 LCP DPEA PE
Psf3 Partner of SLD five, PSF3 PF06425
LCP INSITE
NAD_binding_4 Male sterility protein PF07993 IPR013120
LCP INSITE
Sel1 Sel1 repeat PF08238 IPR006597
LCP INSITE
PI31_Prot_Reg PI31 proteasome regulator PF08577 IPR013886
LCP INSITE



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