Pfam ID
Description
Accession
Interpro ID
GO ID
Thi4
Thi4 family
PF01946
Thi4
forms interactions with
Pfam ID
Description
Accession
Interpro ID
GO ID
Notes
Source
Thi4
Thi4 family
PF01946
efhand
EF hand
PF00036
IPR018248
Arm
Armadillo/beta-catenin-like repeat
PF00514
IPR000225
Ras
Ras family
PF00071
IPR013753
Proteasome
Proteasome A-type and B-type
PF00227
IPR001353
GO:0004298
GO:0005839
GO:0051603
TBP
Transcription factor TFIID (or TATA-binding protein, TBP)
PF00352
IPR000814
GO:0003677
GO:0003702
GO:0006355
GO:0006367
TFIIB
Transcription factor TFIIB repeat
PF00382
IPR013150
GO:0003743
GO:0005515
GO:0006413
Ribosomal_60s
60s Acidic ribosomal protein
PF00428
IPR001813
GO:0003735
GO:0005622
GO:0005840
GO:0006414
MCM
MCM2/3/5 family
PF00493
IPR001208
GO:0003677
GO:0005524
GO:0006260
FHA
FHA domain
PF00498
IPR000253
Copper-fist
Copper fist DNA binding domain
PF00649
IPR001083
GO:0003677
GO:0003700
GO:0005507
GO:0005634
GO:0006355
EF1_GNE
EF-1 guanine nucleotide exchange domain
PF00736
IPR014038
GO:0003746
GO:0005853
GO:0006414
XPG_N
XPG N-terminal domain
PF00752
IPR006085
GO:0004518
GO:0006281
PUF
Pumilio-family RNA binding repeat
PF00806
IPR001313
GO:0003723
Ribosomal_L15e
Ribosomal L15
PF00827
IPR000439
GO:0003735
GO:0005622
GO:0005840
GO:0006412
Ribosomal_L39
Ribosomal L39 protein
PF00832
IPR000077
GO:0003735
GO:0005622
GO:0005840
GO:0006412
XPG_I
XPG I-region
PF00867
IPR006086
GO:0004518
GO:0006281
Ribosomal_S4e
Ribosomal family S4e
PF00900
IPR013845
Ribosomal_L44
Ribosomal protein L44
PF00935
IPR000552
GO:0003735
GO:0005622
GO:0005840
GO:0006412
Ribosomal_S3Ae
Ribosomal S3Ae family
PF01015
IPR001593
GO:0003735
GO:0005622
GO:0005840
GO:0006412
Ribosomal_S19e
Ribosomal protein S19e
PF01090
IPR001266
GO:0003735
GO:0005622
GO:0005840
GO:0006412
Ribosomal_S6e
Ribosomal protein S6e
PF01092
IPR001377
GO:0003735
GO:0005622
GO:0005840
GO:0006412
TFIIS_C
Transcription factor S-II (TFIIS)
PF01096
IPR001222
GO:0003676
GO:0008270
GO:0030528
GO:0045449
Ribosomal_L21e
Ribosomal protein L21e
PF01157
IPR001147
GO:0003735
GO:0005622
GO:0005840
GO:0006412
ATP_bind_3
PP-loop family
PF01171
IPR011063
SBDS
Shwachman-Bodian-Diamond syndrome (SBDS) protein
PF01172
IPR019783
eIF-1a
Translation initiation factor 1A / IF-1
PF01176
IPR006196
GO:0003723
GO:0003743
GO:0006413
RNA_pol_Rpb5_C
RNA polymerase Rpb5, C-terminal domain
PF01191
IPR000783
GO:0003677
GO:0003899
GO:0006350
RNA_pol_L
RNA polymerase Rpb3/Rpb11 dimerisation domain
PF01193
IPR011261
GO:0003899
GO:0006350
GO:0046983
RNA_pol_N
RNA polymerases N / 8 kDa subunit
PF01194
IPR000268
GO:0003677
GO:0003899
GO:0006351
Ribosomal_L31e
Ribosomal protein L31e
PF01198
IPR000054
GO:0003735
GO:0005622
GO:0005840
GO:0006412
Ribosomal_S28e
Ribosomal protein S28e
PF01200
IPR000289
GO:0003735
GO:0005622
GO:0005840
GO:0006412
Ribosomal_S8e
Ribosomal protein S8e
PF01201
IPR022309
Ribosomal_L24e
Ribosomal protein L24e
PF01246
IPR000988
GO:0003735
GO:0005622
GO:0005840
GO:0006412
DAO
FAD dependent oxidoreductase
PF01266
IPR006076
GO:0016491
Fibrillarin
Fibrillarin
PF01269
IPR000692
GO:0003723
GO:0006364
GO:0008033
GO:0008168
Ribosomal_L19e
Ribosomal protein L19e
PF01280
IPR000196
GO:0003735
GO:0005622
GO:0005840
GO:0006412
Ribosomal_S24e
Ribosomal protein S24e
PF01282
IPR001976
GO:0003735
GO:0005622
GO:0005840
GO:0006412
LSM
LSM domain
PF01423
IPR001163
Ribosomal_S27
Ribosomal protein S27a
PF01599
IPR002906
GO:0003735
GO:0005622
GO:0005840
GO:0006412
Ribosomal_L32e
Ribosomal protein L32
PF01655
IPR001515
GO:0003735
GO:0005622
GO:0005840
GO:0006412
Ribosomal_S27e
Ribosomal protein S27
PF01667
IPR000592
GO:0003735
GO:0005622
GO:0005840
GO:0006412
IBB
Importin beta binding domain
PF01749
IPR002652
GO:0005634
GO:0005643
GO:0005737
GO:0006606
GO:0006886
GO:0008565
Ribosomal_L37ae
Ribosomal L37ae protein family
PF01780
IPR002674
GO:0003735
GO:0005622
GO:0005840
GO:0006412
Nop
Putative snoRNA binding domain
PF01798
IPR002687
DUF46
Putative integral membrane protein DUF46
PF01864
IPR002726
Diphthamide_syn
Putative diphthamide synthesis protein
PF01866
IPR002728
Hjc
Archaeal holliday junction resolvase (hjc)
PF01870
IPR002732
AMMECR1
AMMECR1
PF01871
IPR002733
eIF-5_eIF-2B
Domain found in IF2B/IF5
PF01873
IPR002735
GO:0003743
GO:0006413
Memo
Memo-like protein
PF01875
IPR002737
DUF54
Protein of unknown function DUF54
PF01877
IPR002739
DNA_primase_S
Eukaryotic and archaeal DNA primase small subunit
PF01896
IPR002755
GO:0003896
GO:0006269
ATP_bind_4
ATP-binding region
PF01902
IPR002761
Ribosomal_L37e
Ribosomal protein L37e
PF01907
IPR001569
GO:0003735
GO:0005622
GO:0005840
GO:0006412
eIF-6
eIF-6 family
PF01912
IPR002769
GO:0042256
GO:0043022
DS
Deoxyhypusine synthase
PF01916
IPR002773
GO:0008612
Prefoldin_2
Prefoldin subunit
PF01920
IPR002777
GO:0006457
GO:0016272
GO:0051082
SRP19
SRP19 protein
PF01922
IPR002778
GO:0006614
GO:0008312
GO:0048500
tRNA_int_endo
tRNA intron endonuclease, catalytic C-terminal domain
PF01974
IPR006677
GO:0000213
GO:0006388
PTH2
Peptidyl-tRNA hydrolase PTH2
PF01981
IPR002833
GO:0004045
GO:0006412
CTP-dep_RFKase
Domain of unknown function DUF120
PF01982
IPR002834
GO:0000166
GO:0000287
GO:0008531
GO:0009398
dsDNA_bind
Double-stranded DNA-binding domain
PF01984
IPR002836
GO:0003677
TFIIE_alpha
TFIIE alpha subunit
PF02002
TRM
N2,N2-dimethylguanosine tRNA methyltransferase
PF02005
IPR002905
GO:0003723
GO:0004809
GO:0008033
DUF137
Protein of unknown function DUF137
PF02006
IPR002855
RNA_POL_M_15KD
RNA polymerases M/15 Kd subunit
PF02150
IPR001529
GO:0003677
GO:0003899
GO:0006350
CDC48_N
Cell division protein 48 (CDC48), N-terminal domain
PF02359
IPR003338
GO:0005524
Met_10
Met-10+ like-protein
PF02475
IPR003402
DUF171
Uncharacterized ACR, COG2106
PF02598
IPR003750
ERCC4
ERCC4 domain
PF02732
IPR006166
GO:0003677
GO:0004518
GO:0005515
GO:0006259
CDC48_2
Cell division protein 48 (CDC48), domain 2
PF02933
IPR004201
GO:0005524
Prefoldin
Prefoldin subunit
PF02996
IPR004127
GO:0006457
GO:0016272
GO:0051082
zf-ZPR1
ZPR1 zinc-finger domain
PF03367
IPR004457
GO:0005515
GO:0008270
eRF1_1
eRF1 domain 1
PF03463
IPR005140
eRF1_2
eRF1 domain 2
PF03464
IPR005141
eRF1_3
eRF1 domain 3
PF03465
IPR005142
EMG1
EMG1/NEP1 methyltransferase
PF03587
IPR005304
Miro
Miro-like protein
PF08477
IPR013684
GO:0005525
GO:0005622
GO:0007264
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Copyright © 2007, Raghavachari et al.
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