Pfam ID Description Accession Interpro ID GO ID
Histone Core histone H2A/H2B/H3/H4 PF00125 IPR007125
GO:0003677



Histone forms interactions with

Pfam ID Description Accession Interpro ID GO ID Notes Source
Histone Core histone H2A/H2B/H3/H4 PF00125 IPR007125
GO:0003677
 PDB IPFAM 3DID ME RCDP DPEA PE DIPD RDFF INSITE
RhoGEF RhoGEF domain PF00621 IPR000219
GO:0005089
GO:0005622
GO:0035023
 PDB 3DID
ASF1_hist_chap ASF1 like histone chaperone PF04729 IPR006818
GO:0005634
GO:0006333
 PDB 3DID INSITE
CHZ Histone chaperone domain CHZ PF09649 IPR019098
PDB 3DID
Actin Actin PF00022 IPR004000
GO:0005515
 HCP DPEA PE RDFF INSITE
Pkinase Protein kinase domain PF00069 IPR017442
GO:0004672
GO:0005524
GO:0006468
 HCP ME RCDP DPEA PE GPE RDFF INSITE
zf-C3HC4 Zinc finger, C3HC4 type (RING finger) PF00097 IPR018957
HCP DPEA PE RDFF INSITE
NDK Nucleoside diphosphate kinase PF00334 IPR001564
GO:0004550
GO:0005524
GO:0006183
GO:0006228
GO:0006241
 HCP RCDP DPEA PE RDFF INSITE
WD40 WD domain, G-beta repeat PF00400 IPR019781
HCP ME GPE RDFF INSITE
HhH-GPD HhH-GPD superfamily base excision DNA repair protein PF00730 IPR003265
GO:0006284
 HCP DPEA PE GPE RDFF
NAP Nucleosome assembly protein (NAP) PF00956 IPR002164
GO:0005634
GO:0006334
 HCP RCDP DPEA PE DIPD RDFF INSITE
TEA TEA/ATTS domain family PF01285 IPR000818
GO:0003700
GO:0005634
GO:0006355
 HCP DPEA PE GPE RDFF
Peptidase_M18 Aminopeptidase I zinc metalloprotease (M18) PF02127 IPR001948
GO:0004177
GO:0005773
GO:0006508
GO:0008270
 HCP RCDP DPEA PE GPE RDFF
IBN_N Importin-beta N-terminal domain PF03810 IPR001494
GO:0006886
GO:0008565
 HCP ME PE
MAT_Alpha1 Mating-type protein MAT alpha 1 PF04769 IPR006856
GO:0000772
GO:0003677
GO:0005634
GO:0045895
 HCP DPEA PE RDFF INSITE
AAA ATPase family associated with various cellular activities (AAA) PF00004 IPR003959
GO:0005524
 MCP PE INSITE
zf-C2H2 Zinc finger, C2H2 type PF00096 IPR007087
GO:0005622
GO:0008270
 MCP RDFF INSITE
Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD PF00160 IPR002130
GO:0003755
GO:0006457
 MCP RCDP PE
bZIP_1 bZIP transcription factor PF00170 IPR011616
GO:0003700
GO:0006355
GO:0043565
GO:0046983
 MCP PE INSITE
Zn_clus Fungal Zn(2)-Cys(6) binuclear cluster domain PF00172 IPR001138
GO:0003700
GO:0005634
GO:0006355
GO:0008270
 MCP RDFF INSITE
SNF2_N SNF2 family N-terminal domain PF00176 IPR000330
GO:0003677
GO:0005524
 MCP GPE RDFF
UQ_con Ubiquitin-conjugating enzyme PF00179 IPR000608
GO:0019787
GO:0043687
GO:0051246
 MCP RCDP INSITE
Helicase_C Helicase conserved C-terminal domain PF00271 IPR001650
GO:0003676
GO:0004386
GO:0005524
 MCP PE RDFF
Bromodomain Bromodomain PF00439 IPR001487
MCP RDFF INSITE
ICL Isocitrate lyase family PF00463 IPR000918
GO:0003824
GO:0008152
 MCP DPEA PE RDFF
FHA FHA domain PF00498 IPR000253
MCP PE RDFF INSITE
BRCT BRCA1 C Terminus (BRCT) domain PF00533 IPR001357
GO:0005622
 MCP PE RDFF
Peptidase_M24 metallopeptidase family M24 PF00557 IPR000994
GO:0009987
 MCP RDFF INSITE
RNA_pol_Rpb2_6 RNA polymerase Rpb2, domain 6 PF00562 IPR007120
GO:0003677
GO:0003899
GO:0006350
 MCP GPE RDFF
Rhodanese Rhodanese-like domain PF00581 IPR001763
MCP DPEA PE RDFF
PHD PHD-finger PF00628 IPR019787
MCP RDFF INSITE
Copper-fist Copper fist DNA binding domain PF00649 IPR001083
GO:0003677
GO:0003700
GO:0005507
GO:0005634
GO:0006355
 MCP DPEA PE RDFF
AA_kinase Amino acid kinase family PF00696 IPR001048
GO:0008652
 MCP RDFF INSITE
CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone PF00808 IPR003958
GO:0005622
GO:0043565
 MCP DPEA PE INSITE
Dynamin_M Dynamin central region PF01031 IPR000375
GO:0005525
 MCP RCDP RDFF
RNA_pol_L RNA polymerase Rpb3/Rpb11 dimerisation domain PF01193 IPR011261
GO:0003899
GO:0006350
GO:0046983
 MCP RCDP PE
CK_II_beta Casein kinase II regulatory subunit PF01214 IPR000704
GO:0005956
GO:0019887
 MCP RCDP DPEA PE
BAH BAH domain PF01426 IPR001025
GO:0003677
 MCP RDFF INSITE
PUA PUA domain PF01472 IPR002478
GO:0003723
 MCP RDFF INSITE
Ribosomal_L14e Ribosomal protein L14 PF01929 IPR002784
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 MCP RCDP INSITE
Ku Ku70/Ku80 beta-barrel domain PF02735 IPR006164
GO:0003677
GO:0004003
GO:0006303
 MCP KGIDDI INSITE
Ku_C Ku70/Ku80 C-terminal arm PF03730 IPR005160
GO:0003677
GO:0004003
GO:0005634
GO:0006303
 MCP KGIDDI INSITE
Ku_N Ku70/Ku80 N-terminal alpha/beta domain PF03731 IPR005161
MCP KGIDDI INSITE
RNA_pol_Rpb2_7 RNA polymerase Rpb2, domain 7 PF04560 IPR007641
GO:0003677
GO:0003899
GO:0006350
 MCP RCDP GPE
RNA_pol_Rpb2_2 RNA polymerase Rpb2, domain 2 PF04561 IPR007642
GO:0003677
GO:0003899
GO:0006350
 MCP RCDP GPE DIPD
RNA_pol_Rpb2_1 RNA polymerase beta subunit PF04563 IPR007644
GO:0003677
GO:0003899
GO:0006350
 MCP GPE DIPD
RNA_pol_Rpb2_3 RNA polymerase Rpb2, domain 3 PF04565 IPR007645
GO:0003677
GO:0003899
GO:0006350
 MCP RCDP GPE
RNA_pol_Rpb2_5 RNA polymerase Rpb2, domain 5 PF04567 IPR007647
GO:0003677
GO:0003899
GO:0006350
 MCP RCDP GPE
RNA_pol_Rpc82 RNA polymerase III subunit RPC82 PF05645 IPR008806
GO:0003677
GO:0003899
GO:0006350
 MCP DPEA PE GPE
SOH1 SOH1 PF05669 IPR008831
GO:0016455
GO:0016592
GO:0045449
 MCP DPEA PE INSITE
Suf Suppressor of forked protein (Suf) PF05843 IPR008847
GO:0005634
GO:0006397
 MCP DPEA PE GPE
HLH Helix-loop-helix DNA-binding domain PF00010 IPR001092
GO:0030528
GO:0045449
 LCP INSITE
HSP70 Hsp70 protein PF00012 IPR013126
LCP INSITE
KH_1 KH domain PF00013 IPR018111
GO:0003723
 LCP PE
SH2 SH2 domain PF00017 IPR000980
GO:0005515
 LCP RDFF
SH3_1 SH3 domain PF00018 IPR001452
LCP RDFF
Ank Ankyrin repeat PF00023 IPR002110
LCP PE
RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) PF00076 IPR000504
GO:0003676
 LCP INSITE
Y_phosphatase Protein-tyrosine phosphatase PF00102 IPR000242
GO:0004725
GO:0006470
 LCP RDFF
GATase Glutamine amidotransferase class-I PF00117 IPR000991
GO:0003824
 LCP INSITE
DNA_pol_B DNA polymerase family B PF00136 IPR006134
GO:0000166
GO:0003677
GO:0003887
GO:0006260
 LCP RCDP
Metallophos Calcineurin-like phosphoesterase PF00149 IPR004843
GO:0016787
 LCP RCDP
NAD_binding_1 Oxidoreductase NAD-binding domain PF00175 IPR001433
GO:0016491
GO:0055114
 LCP INSITE
ubiquitin Ubiquitin family PF00240 IPR000626
LCP INSITE
Myb_DNA-binding Myb-like DNA-binding domain PF00249 IPR014778
LCP INSITE
Fork_head Fork head domain PF00250 IPR001766
GO:0003700
GO:0005634
GO:0006355
GO:0043565
 LCP RDFF
PAX 'Paired box' domain PF00292 IPR001523
GO:0003677
GO:0045449
 LCP DPEA PE
SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain) PF00319 IPR002100
GO:0003700
GO:0005634
GO:0006355
GO:0043565
 LCP INSITE
Hexokinase_1 Hexokinase PF00349 IPR022672
GO:0005524
GO:0005975
GO:0016773
 LCP INSITE
Dynamin_N Dynamin family PF00350 IPR001401
GO:0003924
GO:0005525
 LCP RDFF
TBP Transcription factor TFIID (or TATA-binding protein, TBP) PF00352 IPR000814
GO:0003677
GO:0003702
GO:0006355
GO:0006367
 LCP INSITE
SSB Single-strand binding protein family PF00436 IPR000424
GO:0003697
 LCP INSITE
UCH Ubiquitin carboxyl-terminal hydrolase PF00443 IPR001394
GO:0004221
GO:0006511
 LCP INSITE
Ribosomal_L10 Ribosomal protein L10 PF00466 IPR001790
GO:0005622
GO:0042254
 LCP RCDP
HMG_box HMG (high mobility group) box PF00505 IPR000910
GO:0003677
GO:0005634
 LCP INSITE
LRR_1 Leucine Rich Repeat PF00560 IPR001611
GO:0005515
 LCP RDFF
Acetyltransf_1 Acetyltransferase (GNAT) family PF00583 IPR022610
LCP INSITE
RNA_pol_Rpb1_2 RNA polymerase Rpb1, domain 2 PF00623 IPR000722
GO:0003677
GO:0003899
GO:0006350
 LCP RDFF
UBA UBA/TS-N domain PF00627 IPR000449
LCP INSITE
F-box F-box domain PF00646 IPR001810
LCP RDFF
BTB BTB/POZ domain PF00651 IPR013069
GO:0005515
 LCP PE
THF_DHG_CYH Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain PF00763 IPR020630
GO:0003824
GO:0009396
 LCP RDFF
PWWP PWWP domain PF00855 IPR000313
LCP INSITE
Cullin Cullin family PF00888 IPR001373
GO:0006511
GO:0031461
GO:0031625
 LCP INSITE
FAD_binding_6 Oxidoreductase FAD-binding domain PF00970 IPR008333
GO:0016491
GO:0055114
 LCP INSITE
CPSase_sm_chain Carbamoyl-phosphate synthase small chain, CPSase domain PF00988 IPR002474
GO:0004086
GO:0006807
 LCP INSITE
Topoisom_I Eukaryotic DNA topoisomerase I, catalytic core PF01028 IPR013500
GO:0003677
GO:0003918
GO:0005694
GO:0006265
 LCP RCDP
DNA_binding_1 6-O-methylguanine DNA methyltransferase, DNA binding domain PF01035 IPR014048
GO:0003824
GO:0006281
 LCP INSITE
EMP24_GP25L emp24/gp25L/p24 family/GOLD PF01105 IPR000348
GO:0006810
GO:0016021
 LCP DPEA PE
SBDS Shwachman-Bodian-Diamond syndrome (SBDS) protein PF01172 IPR019783
LCP INSITE
NAD_Gly3P_dh_N NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus PF01210 IPR011128
GO:0005737
GO:0016616
GO:0046168
GO:0051287
GO:0055114
 LCP INSITE
Coprogen_oxidas Coproporphyrinogen III oxidase PF01218 IPR001260
GO:0004109
GO:0006779
GO:0055114
 LCP INSITE
Ribosomal_L7Ae Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PF01248 IPR004038
LCP INSITE
FTHFS Formate--tetrahydrofolate ligase PF01268 IPR000559
GO:0004329
GO:0005524
GO:0009396
 LCP RDFF
Fibrillarin Fibrillarin PF01269 IPR000692
GO:0003723
GO:0006364
GO:0008033
GO:0008168
 LCP INSITE
mRNA_cap_enzyme mRNA capping enzyme, catalytic domain PF01331 IPR001339
GO:0004484
GO:0006370
GO:0006397
 LCP RDFF
tRNA_anti OB-fold nucleic acid binding domain PF01336 IPR004365
GO:0003676
 LCP RDFF
ARID ARID/BRIGHT DNA binding domain PF01388 IPR001606
GO:0003677
GO:0005622
 LCP RDFF
Macro Macro domain PF01661 IPR002589
LCP FUSION
Ribosomal_L38e Ribosomal L38e protein family PF01781 IPR002675
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP INSITE
NAC NAC domain PF01849 IPR002715
LCP INSITE
MOZ_SAS MOZ/SAS family PF01853 IPR002717
GO:0005634
GO:0016747
GO:0045449
 LCP INSITE
TFIIE_alpha TFIIE alpha subunit PF02002
LCP INSITE
W2 eIF4-gamma/eIF5/eIF2-epsilon PF02020 IPR003307
LCP RCDP
CBFB_NFYA CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B PF02045 IPR001289
GO:0003700
GO:0005634
GO:0006355
 LCP INSITE
zf-UBP Zn-finger in ubiquitin-hydrolases and other protein PF02148 IPR001607
GO:0008270
 LCP INSITE
AT_hook AT hook motif PF02178 IPR017956
GO:0003677
 LCP INSITE
GED Dynamin GTPase effector domain PF02212 IPR003130
GO:0003924
GO:0005525
 LCP RDFF
MAM33 Mitochondrial glycoprotein PF02330 IPR003428
GO:0005759
 LCP INSITE
JmjC JmjC domain PF02373 IPR013129
LCP RDFF
Ppx-GppA Ppx/GppA phosphatase family PF02541 IPR003695
LCP INSITE
S-AdoMet_synt_M S-adenosylmethionine synthetase, central domain PF02772 IPR022629
LCP RCDP
MIF4G MIF4G domain PF02854 IPR003890
GO:0005515
GO:0016070
 LCP RDFF
Methyltransf_1N 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain PF02870 IPR008332
GO:0003908
GO:0006281
 LCP INSITE
THF_DHG_CYH_C Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain PF02882 IPR020631
GO:0003824
GO:0009396
 LCP RDFF
S10_plectin Plectin/S10 domain PF03501 IPR005326
LCP INSITE
SSrecog Structure-specific recognition protein (SSRP1) PF03531 IPR000969
GO:0003677
GO:0005634
 LCP INSITE
Hexokinase_2 Hexokinase PF03727 IPR022673
GO:0005524
GO:0005975
GO:0016773
 LCP INSITE
ORC2 Origin recognition complex subunit 2 PF04084 IPR007220
GO:0000808
GO:0005634
GO:0006260
 LCP INSITE
Endosulfine cAMP-regulated phosphoprotein/endosulfine conserved region PF04667 IPR006760
LCP DPEA PE
Coatomer_E Coatomer epsilon subunit PF04733 IPR006822
GO:0005198
GO:0005515
GO:0006890
GO:0030126
 LCP INSITE
SNF5 SNF5 / SMARCB1 / INI1 PF04855 IPR006939
GO:0000228
GO:0006338
 LCP DPEA PE
RNA_pol_Rpb1_1 RNA polymerase Rpb1, domain 1 PF04997 IPR007080
GO:0003677
GO:0003899
GO:0006350
 LCP RCDP
RNA_pol_Rpb1_4 RNA polymerase Rpb1, domain 4 PF05000 IPR007083
GO:0003677
GO:0003899
GO:0006350
 LCP RCDP
SRP40_C SRP40, C-terminal domain PF05022 IPR007718
LCP INSITE
Methyltransf_8 Hypothetical methyltransferase PF05148 IPR007823
LCP INSITE
AMP_N Aminopeptidase P, N-terminal domain PF05195 IPR007865
GO:0004177
GO:0030145
 LCP INSITE
Bystin Bystin PF05291 IPR007955
LCP INSITE
GAL11 Transcription regulatory protein GAL11 PF05397 IPR008626
GO:0006357
GO:0016455
GO:0016592
 LCP INSITE
SPC12 Microsomal signal peptidase 12 kDa subunit (SPC12) PF06645 IPR009542
GO:0005787
GO:0006465
GO:0008233
GO:0016021
 LCP INSITE
Pescadillo_N Pescadillo N-terminus PF06732 IPR010613
GO:0005730
GO:0008283
 LCP RCDP
NAD_Gly3P_dh_C NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus PF07479 IPR006109
GO:0005975
GO:0016614
GO:0055114
 LCP INSITE
DOT1 Histone methylation protein DOT1 PF08123 IPR013110
GO:0018024
 LCP INSITE
Rtt106 Histone chaperone Rttp106-like PF08512 IPR013719
LCP INSITE
Rep_fac_C Replication factor C PF08542 IPR013748
GO:0003689
GO:0005524
GO:0005663
GO:0006260
 LCP INSITE
Tup_N Tup N-terminal PF08581 IPR013890
LCP INSITE
Nse4 Nse4 PF08743 IPR014854
LCP INSITE
PPP4R2 PPP4R2 PF09184 IPR015267
LCP INSITE



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