Browse domain names starting with 0-9 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z All

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There are 553 entries starting with R

Pfam ID Description Accession Interpro ID
R3H R3H domain PF01424 IPR001374
RA Ras association (RalGDS/AF-6) domain PF00788 IPR000159
Rab5-bind Rab5 binding PF09311 IPR015390
Rab5ip Rab5-interacting protein (Rab5ip) PF07019
Rabaptin Rabaptin PF03528 IPR018514
RabGGT_insert Rab geranylgeranyl transferase alpha-subunit, insert domain PF07711 IPR009087
Rac1 Rac1-binding domain PF09632 IPR019093
Rad1 Repair protein Rad1/Rec1/Rad17 PF02144 IPR003021
Rad10 Binding domain of DNA repair protein Ercc1 (rad10/Swi10) PF03834 IPR004579
Rad17 Rad17 cell cycle checkpoint protein PF03215
Rad21_Rec8 Conserved region of Rad21 / Rec8 like protein PF04824 IPR006909
Rad21_Rec8_N N terminus of Rad21 / Rec8 like protein PF04825 IPR006910
Rad33 Rad33 PF08730 IPR014841
Rad4 Rad4 transglutaminase-like domain PF03835 IPR018325
Rad50_zn_hook Rad50 zinc hook motif PF04423 IPR007517
Rad51 Rad51 PF08423 IPR013632
Rad52_Rad22 Rad52/22 family double-strand break repair protein PF04098 IPR007232
Rad54_N Rad54 N terminal PF08658 IPR013967
Rad9 Rad9 PF04139 IPR007268
Rad9_Rad53_bind Fungal Rad9-like Rad53-binding PF08605 IPR013914
Radial_spoke Radial spokehead-like protein PF04712
Radial_spoke_3 Radial spoke protein 3 PF06098 IPR009290
Radical_SAM Radical SAM superfamily PF04055 IPR007197
Radical_SAM_N Radical SAM N-terminal PF08497 IPR013704
Raffinose_syn Raffinose synthase or seed inhibition protein Sip1 PF05691 IPR008811
RAG2 Recombination activating protein 2 PF03089 IPR004321
RAI1 RAI1 like PF08652 IPR013961
RAI16-like Retinoic acid induced 16-like protein PF10257 IPR019384
RALF Rapid ALkalinization Factor (RALF) PF05498 IPR008801
RAMP Receptor activity modifying family PF04901 IPR006985
RAMP4 Ribosome associated membrane protein RAMP4 PF06624 IPR010580
RAMPs RAMP superfamily PF03787 IPR005537
Ran-binding RanGTP-binding protein PF05508 IPR008812
RanBPM_CRA Ran binding protein in the microtubule-organising centre PF10607 IPR019589
RanGAP1_C RanGAP1 C-terminal domain PF07834 IPR009109
Ran_BP1 RanBP1 domain PF00638 IPR000156
RAP RAP domain PF08373 IPR013584
RAP-1 Rhoptry-associated protein 1 (RAP-1) PF03085 IPR004318
RAP1 Rhoptry-associated protein 1 (RAP-1) PF07218 IPR009864
Rap1-DNA-bind Rap1, DNA-binding PF09197 IPR015280
Rapamycin_bind Rapamycin binding domain PF08771 IPR009076
Rapsyn_N Rapsyn N-terminal myristoylation and linker region PF10579 IPR019568
Rap_GAP Rap/ran-GAP PF02145 IPR000331
Ras Ras family PF00071 IPR013753
RasGAP GTPase-activator protein for Ras-like GTPase PF00616 IPR001936
RasGAP_C RasGAP C-terminus PF03836 IPR000593
RasGEF RasGEF domain PF00617 IPR001895
RasGEF_N Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal motif PF00618 IPR000651
Rb-bdg_C_Cenp-F Rb-binding domain of kinetochore protein Cenp-F/LEK1 PF10490 IPR018302
RBB1NT RBB1NT (NUC162) domain PF08169 IPR012603
RBD Raf-like Ras-binding domain PF02196 IPR003116
RBD-FIP FIP domain PF09457 IPR019018
RBDV_coat Raspberry bushy dwarf virus coat protein PF06593 IPR009516
RBFA Ribosome-binding factor A PF02033 IPR000238
RBM1CTR RBM1CTR (NUC064) family PF08081 IPR012604
RbsD_FucU RbsD / FucU transport protein family PF05025 IPR007721
RB_A Retinoblastoma-associated protein A domain PF01858 IPR002720
RB_B Retinoblastoma-associated protein B domain PF01857 IPR002719
Rb_C Rb C-terminal domain PF08934 IPR015030
RC-P840_PscD Photosystem P840 reaction centre protein PscD PF10657 IPR019608
RcbX RbcX protein PF02341 IPR003435
RCC1 Regulator of chromosome condensation (RCC1) PF00415 IPR000408
RCC_reductase Red chlorophyll catabolite reductase (RCC reductase) PF06405 IPR009439
Rcd1 Cell differentiation family, Rcd1-like PF04078 IPR007216
RcsC RcsC Alpha-Beta-Loop (ABL) PF09456 IPR019017
RCSD RCSD region PF05177 IPR007850
RDD RDD family PF06271 IPR010432
RdgC Putative exonuclease, RdgC PF04381 IPR007476
RdRP RNA dependent RNA polymerase PF05183 IPR007855
RdRP_1 RNA dependent RNA polymerase PF00680 IPR001205
RdRP_2 RNA dependent RNA polymerase PF00978 IPR001788
RdRP_3 Viral RNA dependent RNA polymerase PF00998 IPR002166
RdRP_4 Viral RNA-directed RNA-polymerase PF02123 IPR001795
RdRP_5 Reovirus RNA-dependent RNA polymerase lambda 3 PF07925 IPR012915
RDV-p3 Rice dwarf virus p3 PF09231 IPR015312
RecA recA bacterial DNA recombination protein PF00154 IPR013765
Recep_L_domain Receptor L domain PF01030 IPR000494
RecO Recombination protein O PF02565 IPR003717
Recombinase Recombinase PF07508 IPR011109
RecQ5 RecQ helicase protein-like 5 (RecQ5) PF06959 IPR010716
RecR RecR protein PF02132 IPR015967
RecT RecT family PF03837 IPR018330
RecU Recombination protein U PF03838 IPR004612
RecX RecX family PF02631 IPR003783
Red1 Rec10 / Red1 PF07964 IPR012491
Redoxin Redoxin PF08534 IPR013740
RED_C RED-like protein C-terminal region PF07807 IPR012492
RED_N RED-like protein N-terminal region PF07808 IPR012916
Reeler Reeler domain PF02014 IPR002861
REF Rubber elongation factor protein (REF) PF05755 IPR008802
REGB_T4 Endoribonuclease RegB T4-bacteriophage encoded PF10715 IPR019653
Reg_prop Two component regulator propeller PF07494 IPR011110
REJ REJ domain PF02010 IPR002859
Relaxase Relaxase/Mobilisation nuclease domain PF03432 IPR005094
RelA_SpoT Region found in RelA / SpoT proteins PF04607 IPR007685
RelB RelB antitoxin PF04221 IPR007337
Remorin_C Remorin, C-terminal region PF03763 IPR005516
Remorin_N Remorin, N-terminal region PF03766 IPR005518
Renin_r Renin receptor-like protein PF07850 IPR012493
Reoviridae_Vp9 Reoviridae VP9 PF08978 IPR015072
Reovirus_cap Reovirus outer capsid protein, Sigma 3 PF00979 IPR000153
Reovirus_L2 Reovirus core-spike protein lambda-2 (L2) PF06016 IPR010311
Reovirus_M2 Reovirus major virion structural protein Mu-1/Mu-1C (M2) PF05993 IPR009113
Reovirus_Mu2 Reovirus minor core protein Mu-2 PF07781 IPR012494
Reo_P9 Reovirus P9-like family PF06043 IPR009268
Reo_sigma1 Reovirus viral attachment protein sigma 1 PF01664 IPR002592
Reo_sigmaC Reovirus sigma C capsid protein PF04582 IPR007662
Rep-A_N Replication factor-A protein 1, N-terminal domain PF04057 IPR007199
RepA1_leader Tap RepA1 leader peptide PF08048 IPR012605
RepA_C Plasmid encoded RepA protein PF04796 IPR006881
RepA_N Replication initiator protein A (RepA) N-terminus PF06970 IPR010724
RepB RepB plasmid partitioning protein PF07506 IPR011111
RepB-RCR_reg Replication regulatory protein RepB PF10723 IPR019661
RepC Replication protein C (RepC) PF06504 IPR010522
RepL Firmicute plasmid replication protein (RepL) PF05732 IPR008813
Replicase Replicase family PF03090 IPR004322
Reprolysin Reprolysin (M12B) family zinc metalloprotease PF01421 IPR001590
Rep_1 Replication protein PF01446 IPR000989
Rep_2 Plasmid replication protein PF01719 IPR002631
Rep_3 Initiator Replication protein PF01051 IPR000525
Rep_4 Yeast trans-acting factor (REP1/REP2) PF05797 IPR008897
Rep_fac-A_3 Replication factor A protein 3 PF08661 IPR013970
Rep_fac-A_C Replication factor-A C terminal domain PF08646 IPR013955
Rep_fac_C Replication factor C PF08542 IPR013748
Rep_N Rep protein catalytic domain like PF08724 IPR014835
Rep_Org_C Putative replisome organiser protein C-terminus PF06926 IPR009696
Rep_trans Replication initiation factor PF02486 IPR003491
Rer1 Rer1 family PF03248 IPR004932
RES RES domain PF08808 IPR014914
ResB ResB-like family PF05140 IPR007816
ResIII Type III restriction enzyme, res subunit PF04851 IPR006935
Resistin Resistin PF06954 IPR009714
Resolvase Resolvase, N terminal domain PF00239 IPR006119
Response_reg Response regulator receiver domain PF00072 IPR001789
Reticulon Reticulon PF02453 IPR003388
Retinin_C Drosophila Retinin like protein PF04527 IPR007614
Retrotrans_gag Retrotransposon gag protein PF03732 IPR005162
Retro_M Retroviral M domain PF02813 IPR004028
Ret_tiss Retinal tissue protein PF10044 IPR018737
REV REV protein (anti-repression trans-activator protein) PF00424 IPR000625
RE_AccI AccI restriction endonuclease PF09545 IPR019054
RE_Alw26IDE Type II restriction endonuclease (RE_Alw26IDE) PF09665 IPR014328
RE_AlwI AlwI restriction endonuclease PF09491 IPR018573
RE_ApaLI ApaLI-like restriction endonuclease PF09499 IPR019036
RE_Bpu10I Bpu10I restriction endonuclease PF09549 IPR018577
RE_Bsp6I Bsp6I restriction endonuclease PF09504 IPR019037
RE_BstXI BstXI restriction endonuclease PF09552 IPR018578
RE_CfrBI CfrBI restriction endonuclease PF09516 IPR019042
RE_Eco29kI Eco29kI restriction endonuclease PF09517 IPR018575
RE_Eco47II Eco47II restriction endonuclease PF09553 IPR019057
RE_HaeII HaeII restriction endonuclease PF09554 IPR019058
RE_HaeIII HaeIII restriction endonuclease PF09556 IPR019059
RE_HindIII HindIII restriction endonuclease PF09518 IPR019043
RE_HindVP HindVP restriction endonuclease PF09519 IPR019044
RE_HpaII HpaII restriction endonuclease PF09561 IPR019062
RE_LlaJI LlaJI restriction endonuclease PF09563 IPR018579
RE_LlaMI LlaMI restriction endonuclease PF09562 IPR019063
RE_MamI MamI restriction endonuclease PF09567 IPR019067
RE_MjaI MjaI restriction endonuclease PF09568
RE_MjaII MjaII restriction endonuclease PF09520 IPR019045
RE_NgoBV NgoBV restriction endonuclease PF09564 IPR019064
RE_NgoFVII NgoFVII restriction endonuclease PF09565 IPR019065
RE_NgoPII NgoPII restriction endonuclease PF09521 IPR019046
RE_R_Pab1 R.Pab1 restriction endonuclease PF09522 IPR018576
RE_SacI SacI restriction endonuclease PF09566 IPR019066
RE_ScaI ScaI restriction endonuclease PF09569 IPR019069
RE_SinI SinI restriction endonuclease PF09570 IPR019070
RE_TaqI TaqI restriction endonuclease PF09573 IPR019073
RE_XamI XamI restriction endonuclease PF09572 IPR019072
RE_XcyI XcyI restriction endonuclease PF09571 IPR019071
RF-1 RF-1 domain PF00472 IPR000352
RFC-E_C Clamp-loader complex subunit E C-terminus PF10424 IPR019483
RFC1 Replication factor RFC1 C terminal domain PF08519 IPR013725
RFPL3_antisense Ret finger protein-like 3 antisense PF10489 IPR019524
Rft-1 Rft protein PF04506 IPR007594
RFX1_trans_act RFX1 transcription activation region PF04589 IPR007668
RFX_DNA_binding RFX DNA-binding domain PF02257 IPR003150
RGM_C Repulsive guidance molecule (RGM) C-terminus PF06534 IPR009496
RGM_N Repulsive guidance molecule (RGM) N-terminus PF06535 IPR010536
RGP Reversibly glycosylated polypeptide PF03214 IPR004901
Rgp1 Rgp1 PF08737 IPR014848
RgpF Rhamnan synthesis protein F PF05045 IPR007739
RGS Regulator of G protein signaling domain PF00615 IPR000342
RGS-like Regulator of G protein signalling-like domain PF09128 IPR015212
RhaA L-rhamnose isomerase (RhaA) PF06134 IPR009308
Rhabdo_glycop Rhabdovirus spike glycoprotein PF00974 IPR001903
Rhabdo_M1 Rhabdovirus M1 matrix protein (M1 polymerase-associated protein) PF03342 IPR005010
Rhabdo_M2 Rhabdovirus matrix protein M2 PF04785 IPR006870
Rhabdo_matrix Rhabdovirus matrix protein PF03397 IPR005060
Rhabdo_ncap Rhabdovirus nucleocapsid protein PF00945 IPR000448
Rhabdo_ncap_2 Rhabdovirus nucleoprotein PF03216 IPR004902
Rhabdo_NV Rhabdovirus Non-virion protein PF02484 IPR003490
Rhamnogal_lyase Rhamnogalacturonate lyase family PF06045 IPR010325
RhaT L-rhamnose-proton symport protein (RhaT) PF06379 IPR010476
RHD Rel homology domain (RHD) PF00554 IPR011539
RHD3 Root hair defective 3 GTP-binding protein (RHD3) PF05879 IPR008803
RhgB_N Rhamnogalacturonase B, N-terminal PF09284 IPR015364
RHH_1 Ribbon-helix-helix protein, copG family PF01402 IPR002145
RHH_2 Uncharacterised protein family (UPF0156) PF03693
Rhodanese Rhodanese-like domain PF00581 IPR001763
Rhodopsin_N Amino terminal of the G-protein receptor rhodopsin PF10413 IPR019477
RhoGAP RhoGAP domain PF00620 IPR000198
RhoGEF RhoGEF domain PF00621 IPR000219
Rhomboid Rhomboid family PF01694
Rho_Binding Rho Binding PF08912 IPR015008
Rho_GDI RHO protein GDP dissociation inhibitor PF02115 IPR000406
Rho_N Rho termination factor, N-terminal domain PF07498 IPR011112
Rho_RNA_bind Rho termination factor, RNA-binding domain PF07497 IPR011113
RHS RHS protein PF03527 IPR001826
RHSP Retrotransposon hot spot protein PF07999 IPR006518
RHS_repeat RHS Repeat PF05593 IPR006530
Rhv picornavirus capsid protein PF00073 IPR001676
Rib Rib/alpha-like repeat PF08428 IPR012706
RIB43A RIB43A PF05914 IPR008805
RibD_C RibD C-terminal domain PF01872 IPR002734
Ribonuclease ribonuclease PF00545 IPR000026
Ribonuclease_3 RNase3 domain PF00636 IPR000999
Ribonuclease_BN Ribonuclease BN-like family PF03631 IPR004664
Ribonuclease_P Ribonuclease P PF00825 IPR000100
Ribonuclease_T2 Ribonuclease T2 family PF00445 IPR001568
Ribonuc_2-5A Ribonuclease 2-5A PF06479 IPR010513
Ribonuc_L-PSP Endoribonuclease L-PSP PF01042 IPR006175
Ribonuc_P_40 Ribonuclease P 40kDa (Rpp40) subunit PF08584 IPR013893
Ribonuc_red_2_N Class II vitamin B12-dependent ribonucleotide reductase PF08471 IPR013678
Ribonuc_red_lgC Ribonucleotide reductase, barrel domain PF02867 IPR000788
Ribonuc_red_lgN Ribonucleotide reductase, all-alpha domain PF00317 IPR013509
Ribonuc_red_sm Ribonucleotide reductase, small chain PF00268 IPR000358
Ribophorin_I Ribophorin I PF04597 IPR007676
Ribophorin_II Ribophorin II (RPN2) PF05817 IPR008814
Ribosomal_60s 60s Acidic ribosomal protein PF00428 IPR001813
Ribosomal_L1 Ribosomal protein L1p/L10e family PF00687 IPR002143
Ribosomal_L10 Ribosomal protein L10 PF00466 IPR001790
Ribosomal_L11 Ribosomal protein L11, RNA binding domain PF00298 IPR020783
Ribosomal_L11_N Ribosomal protein L11, N-terminal domain PF03946 IPR020784
Ribosomal_L12 Ribosomal protein L7/L12 C-terminal domain PF00542 IPR013823
Ribosomal_L13 Ribosomal protein L13 PF00572 IPR005822
Ribosomal_L13e Ribosomal protein L13e PF01294 IPR001380
Ribosomal_L14 Ribosomal protein L14p/L23e PF00238 IPR000218
Ribosomal_L14e Ribosomal protein L14 PF01929 IPR002784
Ribosomal_L15 Ribosomal protein L15 amino terminal region PF01305
Ribosomal_L15e Ribosomal L15 PF00827 IPR000439
Ribosomal_L16 Ribosomal protein L16p/L10e PF00252 IPR016180
Ribosomal_L17 Ribosomal protein L17 PF01196 IPR000456
Ribosomal_L18ae Ribosomal L18ae protein family PF01775 IPR021138
Ribosomal_L18e Eukaryotic ribosomal protein L18 PF00828 IPR021131
Ribosomal_L18p Ribosomal L18p/L5e family PF00861 IPR005484
Ribosomal_L19 Ribosomal protein L19 PF01245 IPR001857
Ribosomal_L19e Ribosomal protein L19e PF01280 IPR000196
Ribosomal_L2 Ribosomal Proteins L2, RNA binding domain PF00181 IPR022666
Ribosomal_L20 Ribosomal protein L20 PF00453 IPR005813
Ribosomal_L21e Ribosomal protein L21e PF01157 IPR001147
Ribosomal_L21p Ribosomal prokaryotic L21 protein PF00829 IPR001787
Ribosomal_L22 Ribosomal protein L22p/L17e PF00237 IPR001063
Ribosomal_L22e Ribosomal L22e protein family PF01776 IPR002671
Ribosomal_L23 Ribosomal protein L23 PF00276 IPR013025
Ribosomal_L23eN Ribosomal protein L23, N-terminal domain PF03939 IPR005633
Ribosomal_L24e Ribosomal protein L24e PF01246 IPR000988
Ribosomal_L25p Ribosomal L25p family PF01386 IPR020055
Ribosomal_L27 Ribosomal L27 protein PF01016 IPR001684
Ribosomal_L27e Ribosomal L27e protein family PF01777 IPR001141
Ribosomal_L28 Ribosomal L28 family PF00830 IPR001383
Ribosomal_L28e Ribosomal L28e protein family PF01778 IPR002672
Ribosomal_L29 Ribosomal L29 protein PF00831 IPR001854
Ribosomal_L29e Ribosomal L29e protein family PF01779 IPR002673
Ribosomal_L2_C Ribosomal Proteins L2, C-terminal domain PF03947 IPR022669
Ribosomal_L3 Ribosomal protein L3 PF00297 IPR000597
Ribosomal_L30 Ribosomal protein L30p/L7e PF00327 IPR000517
Ribosomal_L30_N Ribosomal L30 N-terminal domain PF08079 IPR012988
Ribosomal_L31 Ribosomal protein L31 PF01197 IPR002150
Ribosomal_L31e Ribosomal protein L31e PF01198 IPR000054
Ribosomal_L32e Ribosomal protein L32 PF01655 IPR001515
Ribosomal_L32p Ribosomal L32p protein family PF01783 IPR002677
Ribosomal_L33 Ribosomal protein L33 PF00471 IPR001705
Ribosomal_L34 Ribosomal protein L34 PF00468 IPR000271
Ribosomal_L34e Ribosomal protein L34e PF01199 IPR008195
Ribosomal_L35Ae Ribosomal protein L35Ae PF01247 IPR001780
Ribosomal_L35p Ribosomal protein L35 PF01632 IPR021137
Ribosomal_L36 Ribosomal protein L36 PF00444 IPR000473
Ribosomal_L36e Ribosomal protein L36e PF01158 IPR000509
Ribosomal_L37 Mitochondrial ribosomal protein L37 PF08561 IPR013870
Ribosomal_L37ae Ribosomal L37ae protein family PF01780 IPR002674
Ribosomal_L37e Ribosomal protein L37e PF01907 IPR001569
Ribosomal_L38e Ribosomal L38e protein family PF01781 IPR002675
Ribosomal_L39 Ribosomal L39 protein PF00832 IPR000077
Ribosomal_L4 Ribosomal protein L4/L1 family PF00573 IPR002136
Ribosomal_L40e Ribosomal L40e family PF01020 IPR001975
Ribosomal_L41 Ribosomal protein L41 PF05162 IPR007836
Ribosomal_L44 Ribosomal protein L44 PF00935 IPR000552
Ribosomal_L5 Ribosomal protein L5 PF00281 IPR020927
Ribosomal_L5_C ribosomal L5P family C-terminus PF00673 IPR020928
Ribosomal_L6 Ribosomal protein L6 PF00347 IPR020040
Ribosomal_L6e Ribosomal protein L6e PF01159 IPR000915
Ribosomal_L6e_N Ribosomal protein L6, N-terminal domain PF03868 IPR005568
Ribosomal_L7Ae Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PF01248 IPR004038
Ribosomal_L9_C Ribosomal protein L9, C-terminal domain PF03948 IPR020069
Ribosomal_L9_N Ribosomal protein L9, N-terminal domain PF01281 IPR020070
Ribosomal_LX Ribosomal LX protein PF01911
Ribosomal_MRP8 Mitochondrial Ribosomal protein MRP8 PF07957 IPR012917
Ribosomal_S10 Ribosomal protein S10p/S20e PF00338 IPR001848
Ribosomal_S11 Ribosomal protein S11 PF00411 IPR001971
Ribosomal_S12 Ribosomal protein S12 PF00164 IPR006032
Ribosomal_S13 Ribosomal protein S13/S18 PF00416 IPR001892
Ribosomal_S13_N Ribosomal S13/S15 N-terminal domain PF08069 IPR012606
Ribosomal_S14 Ribosomal protein S14p/S29e PF00253 IPR001209
Ribosomal_S15 Ribosomal protein S15 PF00312 IPR000589
Ribosomal_S16 Ribosomal protein S16 PF00886 IPR000307
Ribosomal_S17 Ribosomal protein S17 PF00366 IPR000266
Ribosomal_S17e Ribosomal S17 PF00833 IPR001210
Ribosomal_S18 Ribosomal protein S18 PF01084 IPR001648
Ribosomal_S19 Ribosomal protein S19 PF00203 IPR002222
Ribosomal_S19e Ribosomal protein S19e PF01090 IPR001266
Ribosomal_S2 Ribosomal protein S2 PF00318 IPR001865
Ribosomal_S20p Ribosomal protein S20 PF01649 IPR002583
Ribosomal_S21 Ribosomal protein S21 PF01165 IPR001911
Ribosomal_S21e Ribosomal protein S21e PF01249 IPR001931
Ribosomal_S22 30S ribosomal protein subunit S22 family PF08136 IPR012607
Ribosomal_S23p S23 ribosomal protein PF05635 IPR008815
Ribosomal_S24e Ribosomal protein S24e PF01282 IPR001976
Ribosomal_S25 S25 ribosomal protein PF03297 IPR004977
Ribosomal_S26e Ribosomal protein S26e PF01283 IPR000892
Ribosomal_S27 Ribosomal protein S27a PF01599 IPR002906
Ribosomal_S27e Ribosomal protein S27 PF01667 IPR000592
Ribosomal_S28e Ribosomal protein S28e PF01200 IPR000289
Ribosomal_S30 Ribosomal protein S30 PF04758 IPR006846
Ribosomal_S30AE Sigma 54 modulation protein / S30EA ribosomal protein PF02482 IPR003489
Ribosomal_S39 Ribosomal subunit 39S PF10501 IPR018305
Ribosomal_S3Ae Ribosomal S3Ae family PF01015 IPR001593
Ribosomal_S3_C Ribosomal protein S3, C-terminal domain PF00189 IPR001351
Ribosomal_S3_N Ribosomal protein S3, N-terminal domain PF00417 IPR008282
Ribosomal_S4 Ribosomal protein S4/S9 N-terminal domain PF00163 IPR001912
Ribosomal_S4e Ribosomal family S4e PF00900 IPR013845
Ribosomal_S5 Ribosomal protein S5, N-terminal domain PF00333 IPR013810
Ribosomal_S5_C Ribosomal protein S5, C-terminal domain PF03719 IPR005324
Ribosomal_S6 Ribosomal protein S6 PF01250 IPR000529
Ribosomal_S6e Ribosomal protein S6e PF01092 IPR001377
Ribosomal_S7 Ribosomal protein S7p/S5e PF00177 IPR000235
Ribosomal_S7e Ribosomal protein S7e PF01251 IPR000554
Ribosomal_S8 Ribosomal protein S8 PF00410 IPR000630
Ribosomal_S8e Ribosomal protein S8e PF01201 IPR022309
Ribosomal_S9 Ribosomal protein S9/S16 PF00380 IPR000754
Ribul_P_3_epim Ribulose-phosphate 3 epimerase family PF00834 IPR000056
Rib_5-P_isom_A Ribose 5-phosphate isomerase A (phosphoriboisomerase A) PF06026 IPR004788
Rib_hydrolayse ADP-ribosyl cyclase PF02267 IPR003193
Rib_recp_KP_reg Ribosome receptor lysine/proline rich region PF05104 IPR007794
RIC1 RIC1 PF07064 IPR009771
Ric8 Guanine nucleotide exchange factor synembryn PF10165 IPR019318
RICH RICH domain PF05062 IPR007756
Ricin_B_lectin Ricin-type beta-trefoil lectin domain PF00652 IPR000772
Rick_17kDa_Anti Rickettsia 17 kDa surface antigen PF05433 IPR008816
Rieske Rieske [2Fe-2S] domain PF00355 IPR017941
Rifin_STEVOR Rifin/stevor family PF02009 IPR002858
RIH_assoc RyR and IP3R Homology associated PF08454 IPR013662
RIIa Regulatory subunit of type II PKA R-subunit PF02197 IPR003117
RII_binding_1 RII binding domain PF10522 IPR018459
RimK RimK-like ATP-grasp domain PF08443 IPR013651
RimM RimM N-terminal domain PF01782 IPR002676
RinB Transcriptional activator RinB PF06116 IPR009300
Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain) PF00848 IPR015879
Ring_hydroxyl_B Ring hydroxylating beta subunit PF00866 IPR000391
RINT1_TIP1 RINT-1 / TIP-1 family PF04437 IPR007528
RIO1 RIO1 family PF01163 IPR018934
Rio2_N Rio2, N-terminal PF09202 IPR015285
RIP Ribosome inactivating protein PF00161 IPR001574
RLI Possible metal-binding domain in RNase L inhibitor, RLI PF04068 IPR007209
RLL Putative carnitine deficiency-associated protein PF10036 IPR019265
RMF Ribosome modulation factor PF04957 IPR007040
RmlD_sub_bind RmlD substrate binding domain PF04321 IPR005913
RMMBL RNA-metabolising metallo-beta-lactamase PF07521 IPR011108
RmuC RmuC family PF02646 IPR003798
RNA12 RNA12 protein PF10443 IPR018850
RnaseA Pancreatic ribonuclease PF00074 IPR001427
RnaseH RNase H PF00075 IPR002156
RNaseH_C T4 RNase H, C terminal PF09293 IPR015372
RNase_E_G Ribonuclease E/G family PF10150 IPR019307
RNase_H1_sml Ribonuclease H1/H2 small subunit PF08615 IPR013924
RNase_H2-Ydr279 Ydr279p protein family (RNase H2 complex component) PF09468 IPR019024
RNase_HII Ribonuclease HII PF01351 IPR001352
RNase_PH 3' exoribonuclease family, domain 1 PF01138 IPR001247
RNase_PH_C 3' exoribonuclease family, domain 2 PF03725 IPR015847
RNase_P_p30 RNase P subunit p30 PF01876 IPR002738
RNase_P_pop3 RNase P subunit Pop3 PF08228 IPR013241
RNase_P_Rpp14 Rpp14/Pop5 family PF01900 IPR002759
RNA_bind RNA binding domain PF08675 IPR014789
RNA_bind_2 Predicted RNA-binding protein PF10133 IPR019300
RNA_capsid Calicivirus putative RNA polymerase/capsid protein PF03035 IPR004278
RNA_GG_bind PHAX RNA-binding domain PF10258 IPR019385
RNA_helicase RNA helicase PF00910 IPR000605
RNA_ligase RNA ligase PF09414 IPR021122
RNA_lig_DRB0094 Probable RNA ligase (RNA_lig_DRB0094) PF09513
RNA_lig_T4_1 T4 RNA ligase (RNA_lig_T4_1) PF09511 IPR019039
RNA_Me_trans Predicted SAM-dependent RNA methyltransferase PF04252 IPR007364
RNA_pol DNA-dependent RNA polymerase PF00940 IPR002092
RNA_polI_A14 Yeast RNA polymerase I subunit RPA14 PF08203
RNA_polI_A34 DNA-directed RNA polymerase I subunit RPA34.5 PF08208 IPR013240
RNA_pol_A_bac RNA polymerase Rpb3/RpoA insert domain PF01000 IPR011262
RNA_pol_A_CTD Bacterial RNA polymerase, alpha chain C terminal domain PF03118 IPR011260
RNA_pol_delta DNA-directed RNA polymerase delta subunit PF05066 IPR007759
RNA_pol_III_C17 RNA polymerase III subunit C17 PF09417
RNA_pol_I_A49 A49-like RNA polymerase I associated factor PF06870 IPR009668
RNA_pol_I_TF RNA polymerase I specific initiation factor PF04090 IPR007224
RNA_pol_L RNA polymerase Rpb3/Rpb11 dimerisation domain PF01193 IPR011261
RNA_POL_M_15KD RNA polymerases M/15 Kd subunit PF02150 IPR001529
RNA_pol_N RNA polymerases N / 8 kDa subunit PF01194 IPR000268
RNA_pol_Rbc25 RNA polymerase III subunit Rpc25 PF08292 IPR013238
RNA_pol_Rpa2_4 RNA polymerase I, Rpa2 specific domain PF06883 IPR009674
RNA_pol_Rpb1_1 RNA polymerase Rpb1, domain 1 PF04997 IPR007080
RNA_pol_Rpb1_2 RNA polymerase Rpb1, domain 2 PF00623 IPR000722
RNA_pol_Rpb1_3 RNA polymerase Rpb1, domain 3 PF04983 IPR007066
RNA_pol_Rpb1_4 RNA polymerase Rpb1, domain 4 PF05000 IPR007083
RNA_pol_Rpb1_5 RNA polymerase Rpb1, domain 5 PF04998 IPR007081
RNA_pol_Rpb1_6 RNA polymerase Rpb1, domain 6 PF04992 IPR007075
RNA_pol_Rpb1_7 RNA polymerase Rpb1, domain 7 PF04990 IPR007073
RNA_pol_Rpb1_R RNA polymerase Rpb1 C-terminal repeat PF05001 IPR000684
RNA_pol_Rpb2_1 RNA polymerase beta subunit PF04563 IPR007644
RNA_pol_Rpb2_2 RNA polymerase Rpb2, domain 2 PF04561 IPR007642
RNA_pol_Rpb2_3 RNA polymerase Rpb2, domain 3 PF04565 IPR007645
RNA_pol_Rpb2_4 RNA polymerase Rpb2, domain 4 PF04566 IPR007646
RNA_pol_Rpb2_45 RNA polymerase beta subunit external 1 domain PF10385 IPR019462
RNA_pol_Rpb2_5 RNA polymerase Rpb2, domain 5 PF04567 IPR007647
RNA_pol_Rpb2_6 RNA polymerase Rpb2, domain 6 PF00562 IPR007120
RNA_pol_Rpb2_7 RNA polymerase Rpb2, domain 7 PF04560 IPR007641
RNA_pol_Rpb4 RNA polymerase Rpb4 PF03874 IPR005574
RNA_pol_Rpb5_C RNA polymerase Rpb5, C-terminal domain PF01191 IPR000783
RNA_pol_Rpb5_N RNA polymerase Rpb5, N-terminal domain PF03871 IPR005571
RNA_pol_Rpb6 RNA polymerase Rpb6 PF01192 IPR006110
RNA_pol_Rpb7_N RNA polymerase Rpb7-like, N-terminal domain PF03876 IPR005576
RNA_pol_Rpb8 RNA polymerase Rpb8 PF03870 IPR005570
RNA_pol_Rpc34 RNA polymerase Rpc34 subunit PF05158 IPR007832
RNA_pol_Rpc4 RNA polymerase III RPC4 PF05132 IPR007811
RNA_pol_Rpc82 RNA polymerase III subunit RPC82 PF05645 IPR008806
RNA_replicase_B RNA replicase, beta-chain PF03431 IPR005093
RNB RNB domain PF00773 IPR001900
Rnf-Nqr Rnf-Nqr subunit, membrane protein PF02508 IPR003667
RNR_inhib Ribonucleotide reductase inhibitor PF08591 IPR013900
RNR_N Ribonucleotide reductase N-terminal PF08343 IPR013554
Robl_LC7 Roadblock/LC7 domain PF03259 IPR004942
Rod-binding Rod binding protein PF10135 IPR019301
Rod_C Rough deal protein C-terminal region PF10493 IPR019527
ROF Modulator of Rho-dependent transcription termination (ROF) PF07073 IPR009778
Rogdi_lz Rogdi leucine zipper containing protein PF10259
ROK ROK family PF00480 IPR000600
ROKNT ROKNT (NUC014) domain PF08067 IPR012987
RolB_RolC RolB/RolC glucosidase family PF02027 IPR006064
Root_cap Root cap PF06830 IPR009646
Rop Rop protein PF01815 IPR000769
Rossmann-like Rossmann-like domain PF10727 IPR019665
ROS_MUCR ROS/MUCR transcriptional regulator protein PF05443 IPR008807
Rot1 Chaperone for protein-folding within the ER, fungal PF10681 IPR019623
Rotamase PPIC-type PPIASE domain PF00639 IPR000297
Rotavirus_VP3 Rotavirus VP3 protein PF06929 IPR009697
Rotavirus_VP7 Rotavirus major outer capsid protein VP7 PF05868 IPR008818
Rota_Capsid_VP6 Rotavirus major capsid protein VP6 PF00980 IPR001385
Rota_NS26 Rotavirus NS26 PF01525 IPR002512
Rota_NS35 Rotavirus non-structural protein 35 PF02509 IPR003668
Rota_NS53 Rotavirus RNA-binding Protein 53 (NS53) PF00981 IPR002148
Rota_NS6 Rotavirus non-structural protein 6 PF04866 IPR006950
Rota_NSP3 Rotavirus non-structural protein NSP3 PF01665 IPR002873
Rota_NSP4 Rotavirus non structural protein PF01452 IPR002107
Rota_VP2 Rotavirus VP2 protein PF05087 IPR007779
Roughex Drosophila roughex protein PF06020 IPR009259
Rox3 Rox3 mediator complex subunit PF08633 IPR013942
RP-C Replication protein C PF03428 IPR005090
RPA Replication initiator protein A PF10134 IPR018777
RPAP1_C RPAP1-like, C-terminal PF08620 IPR013929
RPAP1_N RPAP1-like, N-terminal PF08621 IPR013930
RPAP2_Rtr1 Rtr1/RPAP2 family PF04181 IPR007308
RPA_C Replication protein A C terminal PF08784 IPR014892
RPE65 Retinal pigment epithelial membrane protein PF03055 IPR004294
RPEL RPEL repeat PF02755 IPR004018
RPH3A_effector Rabphilin-3A effector domain PF02318 IPR003315
RplB Rare lipoprotein B family PF04390 IPR007485
RPM2 Mitochondrial ribonuclease P subunit (RPM2) PF08579 IPR013888
Rpn3_C Proteasome regulatory subunit C-terminal PF08375 IPR013586
RPN7 26S proteasome subunit RPN7 PF10602 IPR019585
RpoE2 Archaeal DNA-directed RNA polymerase subunit E'' (RpoE'' or RpoE2) PF04035
Rpr2 RNAse P Rpr2/Rpp21/SNM1 subunit domain PF04032 IPR007175
RPW8 Arabidopsis broad-spectrum mildew resistance protein RPW8 PF05659 IPR008808
RQC RQC domain PF09382 IPR018982
RRF Ribosome recycling factor PF01765 IPR002661
Rrf2 Transcriptional regulator PF02082 IPR000944
RRM Putative RRM domain PF10378 IPR018835
RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) PF00076 IPR000504
RRM_2 RNA recognition motif 2 PF04059 IPR007201
RRM_3 RNA binding motif PF08777 IPR014886
RRM_4 RNA recognition motif of the spliceosomal PrP8 PF10598 IPR019582
RRN3 RNA polymerase I specific transcription initiation factor RRN3 PF05327 IPR007991
Rrn6 RNA polymerase I-specific transcription-initiation factor PF10214 IPR019350
RRN9 RNA polymerase I specific transcription initiation factor PF10680 IPR019622
RrnaAD Ribosomal RNA adenine dimethylase PF00398 IPR001737
rRNA_methylase Putative rRNA methylase PF06962 IPR010719
rRNA_processing rRNA processing PF08524 IPR013730
Rrp15p Rrp15p PF07890 IPR012459
RRS1 Ribosome biogenesis regulatory protein (RRS1) PF04939 IPR007023
RR_TM4-6 Ryanodine Receptor TM 4-6 PF06459 IPR009460
RS4NT RS4NT (NUC023) domain PF08071 IPR013843
Rsbr_N Rsbr N terminal PF08678 IPR014792
RsbU_N Phosphoserine phosphatase RsbU, N-terminal domain PF08673 IPR014787
Rsc14 RSC complex, Rsc14/Ldb7 subunit PF08586 IPR013895
RSD-2 RSD-2 N-terminal domain PF07547 IPR011508
Rsd_AlgQ Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ PF04353 IPR007448
RseA_C Anti sigma-E protein RseA, C-terminal domain PF03873 IPR005573
RseA_N Anti sigma-E protein RseA, N-terminal domain PF03872 IPR005572
RseC_MucC Positive regulator of sigma(E), RseC/MucC PF04246 IPR007359
Rsm1 Rsm1-like PF08600 IPR013909
Rsm22 Mitochondrial small ribosomal subunit Rsm22 PF09243 IPR015324
RSV_NS2 Respiratory synctial virus non-structural protein NS2 PF03113 IPR004336
RTA1 RTA1 like protein PF04479 IPR007568
RTBV_P12 Rice tungro bacilliform virus P12 protein PF06361 IPR009417
RTBV_P46 Rice tungro bacilliform virus P46 protein PF06216 IPR009347
RTC RNA 3'-terminal phosphate cyclase PF01137 IPR000228
RtcR Regulator of RNA terminal phosphate cyclase PF06956 IPR009715
RTC_insert RNA 3'-terminal phosphate cyclase (RTC), insert domain PF05189 IPR013796
RteC RteC protein PF09357 IPR018534
RTP Replication terminator protein PF02334 IPR003432
RTP801_C RTP801 C-terminal region PF07809 IPR012918
Rtt102p Rtt102p-like transcription regulator protein PF09510 IPR018304
Rtt106 Histone chaperone Rttp106-like PF08512 IPR013719
RTX RTX N-terminal domain PF02382 IPR018504
RtxA RtxA repeat PF07634 IPR011509
RTX_C RTX C-terminal domain PF08339 IPR013550
Rubella_Capsid Rubella capsid protein PF05750 IPR008819
Rubella_E1 Rubella membrane glycoprotein E1 PF05748 IPR008820
Rubella_E2 Rubella membrane glycoprotein E2 PF05749 IPR008821
Rubis-subs-bind Rubisco LSMT substrate-binding PF09273 IPR015353
RuBisCO_large Ribulose bisphosphate carboxylase large chain, catalytic domain PF00016 IPR000685
RuBisCO_large_N Ribulose bisphosphate carboxylase large chain, N-terminal domain PF02788 IPR017444
RuBisCO_small Ribulose bisphosphate carboxylase, small chain PF00101 IPR000894
Rubredoxin Rubredoxin PF00301 IPR004039
Rubrerythrin Rubrerythrin PF02915 IPR003251
RUN RUN domain PF02759 IPR004012
Runt Runt domain PF00853 IPR013524
RunxI Runx inhibition domain PF08504 IPR013711
RusA Endodeoxyribonuclease RusA PF05866 IPR008822
RuvA_C RuvA, C-terminal domain PF07499 IPR011114
RuvA_N RuvA N terminal domain PF01330 IPR013849
RuvB_C Holliday junction DNA helicase ruvB C-terminus PF05491 IPR008823
RuvB_N Holliday junction DNA helicase ruvB N-terminus PF05496 IPR008824
RuvC Crossover junction endodeoxyribonuclease RuvC PF02075 IPR002176
rve Integrase core domain PF00665 IPR001584
RVP Retroviral aspartyl protease PF00077 IPR018061
RVP_2 Retroviral aspartyl protease PF08284 IPR013242
RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase) PF00078 IPR000477
RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) PF07727 IPR013103
RVT_connect Reverse transcriptase connection domain PF06815 IPR010659
RVT_thumb Reverse transcriptase thumb domain PF06817 IPR010661
RWD RWD domain PF05773 IPR006575
RWP-RK RWP-RK domain PF02042 IPR003035
RXT2_N RXT2-like, N-terminal PF08595 IPR013904
Rxt3 Histone deacetylation protein Rxt3 PF08642 IPR013951
RYDR_ITPR RIH domain PF01365 IPR000699
RyR RyR domain PF02026 IPR003032
Rz1 Lipoprotein Rz1 precursor PF06085 IPR010346
R_equi_Vir Rhodococcus equi virulence-associated protein PF05526 IPR008810


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