Pfam ID Description Accession Interpro ID GO ID
RNA_pol_L RNA polymerase Rpb3/Rpb11 dimerisation domain PF01193 IPR011261
GO:0003899
GO:0006350
GO:0046983



RNA_pol_L forms interactions with

Pfam ID Description Accession Interpro ID GO ID Notes Source
RNA_pol_Rpb2_6 RNA polymerase Rpb2, domain 6 PF00562 IPR007120
GO:0003677
GO:0003899
GO:0006350
 PDB IPFAM 3DID PVALUE GPE RDFF
RNA_pol_Rpb1_2 RNA polymerase Rpb1, domain 2 PF00623 IPR000722
GO:0003677
GO:0003899
GO:0006350
 PDB IPFAM 3DID GPE DIPD RDFF
RNA_pol_A_bac RNA polymerase Rpb3/RpoA insert domain PF01000 IPR011262
GO:0003899
GO:0006350
GO:0046983
 PDB IPFAM 3DID ME PVALUE GPE DIPD INSITE
RNA_pol_L RNA polymerase Rpb3/Rpb11 dimerisation domain PF01193 IPR011261
GO:0003899
GO:0006350
GO:0046983
 PDB IPFAM 3DID RCDP PVALUE GPE DIPD INSITE
RNA_pol_N RNA polymerases N / 8 kDa subunit PF01194 IPR000268
GO:0003677
GO:0003899
GO:0006351
 PDB IPFAM 3DID RCDP DIPD INSITE DIMA
DNA_RNApol_7kD DNA directed RNA polymerase, 7 kDa subunit PF03604
GO:0003677
GO:0003899
GO:0006350
 PDB 3DID DIPD
RNA_pol_Rpb8 RNA polymerase Rpb8 PF03870 IPR005570
GO:0006350
 PDB IPFAM 3DID RCDP DIPD INSITE
RNA_pol_Rpb1_3 RNA polymerase Rpb1, domain 3 PF04983 IPR007066
GO:0003677
GO:0003899
GO:0006350
 PDB IPFAM 3DID GPE
RNA_pol_Rpb1_4 RNA polymerase Rpb1, domain 4 PF05000 IPR007083
GO:0003677
GO:0003899
GO:0006350
 PDB IPFAM 3DID GPE
S1 S1 RNA binding domain PF00575 IPR003029
GO:0003723
 HCP RCDP GPE DIPD INSITE
TFIIS_C Transcription factor S-II (TFIIS) PF01096 IPR001222
GO:0003676
GO:0008270
GO:0030528
GO:0045449
 HCP GPE RDFF INSITE DIMA
RNA_pol_Rpb5_C RNA polymerase Rpb5, C-terminal domain PF01191 IPR000783
GO:0003677
GO:0003899
GO:0006350
 HCP RCDP DIPD INSITE DIMA
RNA_POL_M_15KD RNA polymerases M/15 Kd subunit PF02150 IPR001529
GO:0003677
GO:0003899
GO:0006350
 HCP RCDP GPE RDFF INSITE DIMA
RNA_pol_A_CTD Bacterial RNA polymerase, alpha chain C terminal domain PF03118 IPR011260
GO:0003677
GO:0003899
GO:0006350
 HCP ME
RNA_pol_Rpb5_N RNA polymerase Rpb5, N-terminal domain PF03871 IPR005571
GO:0003677
GO:0003899
GO:0005634
GO:0006350
 HCP DIPD INSITE
RNA_pol_Rpb7_N RNA polymerase Rpb7-like, N-terminal domain PF03876 IPR005576
GO:0003899
GO:0006350
 HCP RCDP GPE DIPD INSITE
RNA_pol_Rpb2_7 RNA polymerase Rpb2, domain 7 PF04560 IPR007641
GO:0003677
GO:0003899
GO:0006350
 HCP RCDP PVALUE GPE
RNA_pol_Rpb2_2 RNA polymerase Rpb2, domain 2 PF04561 IPR007642
GO:0003677
GO:0003899
GO:0006350
 HCP PVALUE GPE DIPD
RNA_pol_Rpb2_1 RNA polymerase beta subunit PF04563 IPR007644
GO:0003677
GO:0003899
GO:0006350
 HCP PVALUE GPE DIPD
RNA_pol_Rpb2_3 RNA polymerase Rpb2, domain 3 PF04565 IPR007645
GO:0003677
GO:0003899
GO:0006350
 HCP PVALUE GPE
RNA_pol_Rpb2_4 RNA polymerase Rpb2, domain 4 PF04566 IPR007646
GO:0003677
GO:0003899
GO:0006350
 HCP RCDP PVALUE DIPD
RNA_pol_Rpb2_5 RNA polymerase Rpb2, domain 5 PF04567 IPR007647
GO:0003677
GO:0003899
GO:0006350
 HCP PVALUE GPE
RNA_pol_Rpb1_1 RNA polymerase Rpb1, domain 1 PF04997 IPR007080
GO:0003677
GO:0003899
GO:0006350
 HCP RCDP GPE DIPD
RNA_pol_Rpb1_5 RNA polymerase Rpb1, domain 5 PF04998 IPR007081
GO:0003677
GO:0003899
GO:0006350
 HCP RCDP GPE
efhand EF hand PF00036 IPR018248
MCP DIPD INSITE
Histone Core histone H2A/H2B/H3/H4 PF00125 IPR007125
GO:0003677
 MCP RCDP PE
CPSase_L_chain Carbamoyl-phosphate synthase L chain, N-terminal domain PF00289 IPR005481
GO:0003824
GO:0008152
 MCP GPE DIPD
Trp_syntA Tryptophan synthase alpha chain PF00290 IPR002028
GO:0004834
GO:0006568
 MCP RCDP DIPD
6PGD 6-phosphogluconate dehydrogenase, C-terminal domain PF00393 IPR006114
GO:0004616
GO:0006098
GO:0050661
GO:0055114
 MCP RCDP DIPD
WW WW domain PF00397 IPR001202
GO:0005515
 MCP GPE DIPD
Rotamase PPIC-type PPIASE domain PF00639 IPR000297
GO:0016853
 MCP RCDP DIPD
DAHP_synth_1 DAHP synthetase I family PF00793 IPR006218
GO:0009058
 MCP RCDP DIPD
SMC_N RecF/RecN/SMC N terminal domain PF02463 IPR003395
GO:0005524
GO:0005694
 MCP RCDP DIPD
CPSase_L_D2 Carbamoyl-phosphate synthase L chain, ATP binding domain PF02786 IPR005479
GO:0003824
GO:0005524
GO:0008152
 MCP GPE DIPD
Ldh_1_C lactate/malate dehydrogenase, alpha/beta C-terminal domain PF02866 IPR022383
MCP RCDP INSITE
RNA_pol_Rpb4 RNA polymerase Rpb4 PF03874 IPR005574
GO:0003899
GO:0006350
 MCP INSITE
tRNA-synt_1c_C tRNA synthetases class I (E and Q), anti-codon binding domain PF03950 IPR020059
GO:0000166
GO:0004812
GO:0005524
GO:0005737
GO:0006412
GO:0006418
 MCP RCDP DIPD
RNA_pol_Rpb1_7 RNA polymerase Rpb1, domain 7 PF04990 IPR007073
GO:0003677
GO:0003899
GO:0006350
 MCP GPE
RNA_pol_Rpb1_6 RNA polymerase Rpb1, domain 6 PF04992 IPR007075
GO:0003677
GO:0003899
GO:0006350
 MCP GPE
RNA_pol_Rpc34 RNA polymerase Rpc34 subunit PF05158 IPR007832
GO:0003677
GO:0003899
GO:0005634
GO:0006350
 MCP INSITE
RNA_pol_I_A49 A49-like RNA polymerase I associated factor PF06870 IPR009668
GO:0003677
GO:0003899
GO:0005634
GO:0006350
 MCP INSITE
Anticodon_1 Anticodon-binding domain PF08264 IPR013155
GO:0000166
GO:0004812
GO:0005524
GO:0005737
GO:0006412
GO:0006418
 MCP RCDP DIPD
RNA_pol_Rbc25 RNA polymerase III subunit Rpc25 PF08292 IPR013238
MCP RCDP INSITE
GTP_EFTU Elongation factor Tu GTP binding domain PF00009 IPR000795
GO:0003924
GO:0005525
 LCP RCDP
Ank Ankyrin repeat PF00023 IPR002110
LCP KGIDDI
Arf ADP-ribosylation factor family PF00025 IPR006689
GO:0005525
 LCP RCDP
Fer4 4Fe-4S binding domain PF00037 IPR001450
GO:0009055
GO:0051536
 LCP FUSION
GST_C Glutathione S-transferase, C-terminal domain PF00043 IPR004046
LCP GPE
Ldh_1_N lactate/malate dehydrogenase, NAD binding domain PF00056 IPR001236
GO:0016491
GO:0055114
 LCP INSITE
Pkinase Protein kinase domain PF00069 IPR017442
GO:0004672
GO:0005524
GO:0006468
 LCP RDFF
zf-C3HC4 Zinc finger, C3HC4 type (RING finger) PF00097 IPR018957
LCP INSITE
ADH_zinc_N Zinc-binding dehydrogenase PF00107 IPR013149
GO:0008270
GO:0016491
GO:0055114
 LCP RCDP
tRNA-synt_1 tRNA synthetases class I (I, L, M and V) PF00133 IPR002300
GO:0000166
GO:0004812
GO:0005524
GO:0005737
GO:0006412
GO:0006418
 LCP DIPD
Metallophos Calcineurin-like phosphoesterase PF00149 IPR004843
GO:0016787
 LCP RCDP
Iso_dh Isocitrate/isopropylmalate dehydrogenase PF00180 IPR001804
GO:0000287
GO:0016616
GO:0051287
GO:0055114
 LCP RCDP
PALP Pyridoxal-phosphate dependent enzyme PF00291 IPR001926
GO:0003824
GO:0008152
GO:0030170
 LCP GPE
GATase_2 Glutamine amidotransferases class-II PF00310 IPR000583
GO:0008152
 LCP RCDP
TBP Transcription factor TFIID (or TATA-binding protein, TBP) PF00352 IPR000814
GO:0003677
GO:0003702
GO:0006355
GO:0006367
 LCP DIMA
Biotin_lipoyl Biotin-requiring enzyme PF00364 IPR000089
LCP GPE
TFIIB Transcription factor TFIIB repeat PF00382 IPR013150
GO:0003743
GO:0005515
GO:0006413
 LCP DIMA
Ribosomal_60s 60s Acidic ribosomal protein PF00428 IPR001813
GO:0003735
GO:0005622
GO:0005840
GO:0006414
 LCP DIMA
MCM MCM2/3/5 family PF00493 IPR001208
GO:0003677
GO:0005524
GO:0006260
 LCP DIMA
FHA FHA domain PF00498 IPR000253
LCP PVALUE
AhpC-TSA AhpC/TSA family PF00578 IPR000866
GO:0016209
GO:0016491
 LCP RCDP
HECT HECT-domain (ubiquitin-transferase) PF00632 IPR000569
GO:0005622
GO:0006464
GO:0016881
 LCP RCDP
EF1_GNE EF-1 guanine nucleotide exchange domain PF00736 IPR014038
GO:0003746
GO:0005853
GO:0006414
 LCP DIMA
CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone PF00808 IPR003958
GO:0005622
GO:0043565
 LCP DIMA
Ribosomal_L15e Ribosomal L15 PF00827 IPR000439
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
Ribosomal_L39 Ribosomal L39 protein PF00832 IPR000077
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
XPG_I XPG I-region PF00867 IPR006086
GO:0004518
GO:0006281
 LCP DIMA
Ribosomal_S4e Ribosomal family S4e PF00900 IPR013845
LCP DIMA
Ribosomal_L44 Ribosomal protein L44 PF00935 IPR000552
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
Ribosomal_S3Ae Ribosomal S3Ae family PF01015 IPR001593
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
Cys_Met_Meta_PP Cys/Met metabolism PLP-dependent enzyme PF01053 IPR000277
GO:0006520
GO:0030170
 LCP RCDP
Ribosomal_S19e Ribosomal protein S19e PF01090 IPR001266
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
Ribosomal_S6e Ribosomal protein S6e PF01092 IPR001377
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
Ribosomal_L21e Ribosomal protein L21e PF01157 IPR001147
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
SBDS Shwachman-Bodian-Diamond syndrome (SBDS) protein PF01172 IPR019783
LCP DIMA
eIF-1a Translation initiation factor 1A / IF-1 PF01176 IPR006196
GO:0003723
GO:0003743
GO:0006413
 LCP DIMA
RNA_pol_Rpb6 RNA polymerase Rpb6 PF01192 IPR006110
GO:0003677
GO:0003899
GO:0006351
 LCP INSITE
Ribosomal_L31e Ribosomal protein L31e PF01198 IPR000054
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
Ribosomal_S8e Ribosomal protein S8e PF01201 IPR022309
LCP DIMA
Ribosomal_L24e Ribosomal protein L24e PF01246 IPR000988
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
Fibrillarin Fibrillarin PF01269 IPR000692
GO:0003723
GO:0006364
GO:0008033
GO:0008168
 LCP DIMA
Ribosomal_L19e Ribosomal protein L19e PF01280 IPR000196
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
Ribosomal_S24e Ribosomal protein S24e PF01282 IPR001976
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
Pterin_4a Pterin 4 alpha carbinolamine dehydratase PF01329 IPR001533
GO:0006729
GO:0008124
 LCP INSITE
Ribosomal_S27 Ribosomal protein S27a PF01599 IPR002906
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
Ribosomal_L32e Ribosomal protein L32 PF01655 IPR001515
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
Ribosomal_S27e Ribosomal protein S27 PF01667 IPR000592
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
Ribosomal_L37ae Ribosomal L37ae protein family PF01780 IPR002674
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
Nop Putative snoRNA binding domain PF01798 IPR002687
LCP DIMA
NAC NAC domain PF01849 IPR002715
LCP DIMA
Diphthamide_syn Putative diphthamide synthesis protein PF01866 IPR002728
LCP DIMA
eIF-5_eIF-2B Domain found in IF2B/IF5 PF01873 IPR002735
GO:0003743
GO:0006413
 LCP DIMA
DNA_primase_S Eukaryotic and archaeal DNA primase small subunit PF01896 IPR002755
GO:0003896
GO:0006269
 LCP DIMA
Ribosomal_L37e Ribosomal protein L37e PF01907 IPR001569
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
Prefoldin_2 Prefoldin subunit PF01920 IPR002777
GO:0006457
GO:0016272
GO:0051082
 LCP DIMA
SRP19 SRP19 protein PF01922 IPR002778
GO:0006614
GO:0008312
GO:0048500
 LCP DIMA
Thi4 Thi4 family PF01946
LCP DIMA
dsDNA_bind Double-stranded DNA-binding domain PF01984 IPR002836
GO:0003677
 LCP DIMA
TFIIE_alpha TFIIE alpha subunit PF02002
LCP DIMA
TFIIF_beta Transcription initiation factor IIF, beta subunit PF02270 IPR003196
GO:0003702
GO:0005524
GO:0005674
GO:0006367
 LCP INSITE
CDC48_N Cell division protein 48 (CDC48), N-terminal domain PF02359 IPR003338
GO:0005524
 LCP DIMA
PYC_OADA Conserved carboxylase domain PF02436 IPR003379
LCP RCDP
STT3 Oligosaccharyl transferase STT3 subunit PF02516 IPR003674
GO:0004576
GO:0006486
GO:0016020
 LCP DIMA
ERCC4 ERCC4 domain PF02732 IPR006166
GO:0003677
GO:0004518
GO:0005515
GO:0006259
 LCP DIMA
Biotin_carb_C Biotin carboxylase C-terminal domain PF02785 IPR005482
GO:0016874
 LCP GPE
Prefoldin Prefoldin subunit PF02996 IPR004127
GO:0006457
GO:0016272
GO:0051082
 LCP DIMA
NAD_binding_2 NAD binding domain of 6-phosphogluconate dehydrogenase PF03446 IPR006115
GO:0004616
GO:0006098
GO:0055114
 LCP DIPD
eRF1_1 eRF1 domain 1 PF03463 IPR005140
LCP DIMA
eRF1_2 eRF1 domain 2 PF03464 IPR005141
LCP DIMA
eRF1_3 eRF1 domain 3 PF03465 IPR005142
LCP DIMA
Coatomer_WDAD Coatomer WD associated region PF04053 IPR006692
GO:0005198
GO:0005515
GO:0006886
GO:0016192
GO:0030117
 LCP RCDP
RPAP2_Rtr1 Rtr1/RPAP2 family PF04181 IPR007308
LCP INSITE
Gtr1_RagA Gtr1/RagA G protein conserved region PF04670 IPR006762
GO:0005525
GO:0005634
GO:0005737
 LCP INSITE
ASF1_hist_chap ASF1 like histone chaperone PF04729 IPR006818
GO:0005634
GO:0006333
 LCP INSITE
RNA_pol_Rpc4 RNA polymerase III RPC4 PF05132 IPR007811
GO:0003677
GO:0003899
GO:0005666
GO:0006383
 LCP INSITE
IWS1_C IWS1 C-terminus PF05909
LCP INSITE
Spt4 Transcription elongation protein Spt4 PF06093
LCP INSITE
MFS_1 Major Facilitator Superfamily PF07690 IPR011701
GO:0055085
 LCP RCDP
Glyco_hydro_38C Glycosyl hydrolases family 38 C-terminal domain PF07748 IPR011682
GO:0006013
GO:0015923
 LCP RCDP
DUF1690 Protein of Unknown function (DUF1690) PF07956 IPR012471
LCP INSITE
RNA_polI_A34 DNA-directed RNA polymerase I subunit RPA34.5 PF08208 IPR013240
LCP INSITE
DUF1762 Protein of unknown function (DUF1762) PF08574 IPR013883
LCP INSITE
Maf1 Maf1 regulator PF09174 IPR015257
LCP INSITE



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