Pfam ID |
Description |
Accession |
Interpro ID |
GO ID |
Notes |
Source |
BRCT |
BRCA1 C Terminus (BRCT) domain |
PF00533 |
IPR001357 |
|
 |
|
P53 |
P53 DNA-binding domain |
PF00870 |
IPR011615 |
|
 |
|
XRCC4 |
DNA double-strand break repair and V(D)J recombination protein XRCC4 |
PF06632 |
IPR010585 |
|
 |
|
Pkinase |
Protein kinase domain |
PF00069 |
IPR017442 |
|
 |
|
Myb_DNA-binding |
Myb-like DNA-binding domain |
PF00249 |
IPR014778 |
|
 |
|
FHA |
FHA domain |
PF00498 |
IPR000253 |
|
 |
|
HHH |
Helix-hairpin-helix motif |
PF00633 |
IPR000445 |
|
 |
|
PARP |
Poly(ADP-ribose) polymerase catalytic domain |
PF00644 |
IPR012317 |
|
 |
|
DNA_ligase_aden |
NAD-dependent DNA ligase adenylation domain |
PF01653 |
IPR013839 |
|
 |
|
eIF-6 |
eIF-6 family |
PF01912 |
IPR002769 |
|
 |
|
DNA_ligase_ZBD |
NAD-dependent DNA ligase C4 zinc finger domain |
PF03119 |
IPR004149 |
|
 |
|
DNA_ligase_OB |
NAD-dependent DNA ligase OB-fold domain |
PF03120 |
IPR004150 |
|
 |
|
Brix |
Brix domain |
PF04427 |
IPR007109 |
|
 |
|
Ank |
Ankyrin repeat |
PF00023 |
IPR002110 |
|
 |
|
RRM_1 |
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) |
PF00076 |
IPR000504 |
|
 |
|
zf-C3HC4 |
Zinc finger, C3HC4 type (RING finger) |
PF00097 |
IPR018957 |
|
 |
|
Histone |
Core histone H2A/H2B/H3/H4 |
PF00125 |
IPR007125 |
|
 |
|
Helicase_C |
Helicase conserved C-terminal domain |
PF00271 |
IPR001650 |
|
 |
|
Oxidored_FMN |
NADH:flavin oxidoreductase / NADH oxidase family |
PF00724 |
IPR001155 |
|
 |
|
Nol1_Nop2_Fmu |
NOL1/NOP2/sun family |
PF01189 |
IPR001678 |
|
 |
|
CK_II_beta |
Casein kinase II regulatory subunit |
PF01214 |
IPR000704 |
|
 |
|
IBB |
Importin beta binding domain |
PF01749 |
IPR002652 |
|
 |
|
eIF-5_eIF-2B |
Domain found in IF2B/IF5 |
PF01873 |
IPR002735 |
|
 |
|
AAA |
ATPase family associated with various cellular activities (AAA) |
PF00004 |
IPR003959 |
|
 |
|
HSP20 |
Hsp20/alpha crystallin family |
PF00011 |
IPR002068 |
|
 |
|
dsrm |
Double-stranded RNA binding motif |
PF00035 |
IPR001159 |
|
 |
|
fn3 |
Fibronectin type III domain |
PF00041 |
IPR003961 |
|
 |
|
VWA |
von Willebrand factor type A domain |
PF00092 |
IPR002035 |
|
 |
|
ketoacyl-synt |
Beta-ketoacyl synthase, N-terminal domain |
PF00109 |
IPR014030 |
|
 |
|
TIM |
Triosephosphate isomerase |
PF00121 |
IPR000652 |
|
 |
|
Sigma70_r1_2 |
Sigma-70 factor, region 1.2 |
PF00140 |
IPR009042 |
|
 |
|
Metallophos |
Calcineurin-like phosphoesterase |
PF00149 |
IPR004843 |
|
 |
|
Ribosomal_S4 |
Ribosomal protein S4/S9 N-terminal domain |
PF00163 |
IPR001912 |
|
 |
|
Cpn10 |
Chaperonin 10 Kd subunit |
PF00166 |
IPR020818 |
|
 |
|
Ribosomal_L2 |
Ribosomal Proteins L2, RNA binding domain |
PF00181 |
IPR022666 |
|
 |
|
Bac_DNA_binding |
Bacterial DNA-binding protein |
PF00216 |
IPR000119 |
|
 |
|
Ribosomal_L16 |
Ribosomal protein L16p/L10e |
PF00252 |
IPR016180 |
|
 |
|
DEAD |
DEAD/DEAH box helicase |
PF00270 |
IPR011545 |
|
 |
|
Bac_DnaA |
Bacterial dnaA protein |
PF00308 |
IPR013317 |
|
 |
|
WD40 |
WD domain, G-beta repeat |
PF00400 |
IPR019781 |
|
 |
|
Ribosomal_S3_N |
Ribosomal protein S3, N-terminal domain |
PF00417 |
IPR008282 |
|
 |
|
SSB |
Single-strand binding protein family |
PF00436 |
IPR000424 |
|
 |
|
Ribosomal_L20 |
Ribosomal protein L20 |
PF00453 |
IPR005813 |
|
 |
|
Ribosomal_L34 |
Ribosomal protein L34 |
PF00468 |
IPR000271 |
|
 |
|
RF-1 |
RF-1 domain |
PF00472 |
IPR000352 |
|
 |
|
DNA_pol_A |
DNA polymerase family A |
PF00476 |
IPR001098 |
|
 |
|
MutS_V |
MutS domain V |
PF00488 |
IPR000432 |
|
 |
|
Arm |
Armadillo/beta-catenin-like repeat |
PF00514 |
IPR000225 |
|
 |
|
Ribosomal_L12 |
Ribosomal protein L7/L12 C-terminal domain |
PF00542 |
IPR013823 |
|
 |
|
PP-binding |
Phosphopantetheine attachment site |
PF00550 |
IPR006163 |
|
 |
|
CLP_protease |
Clp protease |
PF00574 |
IPR001907 |
|
 |
|
RhoGEF |
RhoGEF domain |
PF00621 |
IPR000219 |
|
 |
|
Ribonuclease_3 |
RNase3 domain |
PF00636 |
IPR000999 |
|
 |
|
E1_dh |
Dehydrogenase E1 component |
PF00676 |
IPR001017 |
|
 |
|
Acyl_transf_1 |
Acyl transferase domain |
PF00698 |
IPR014043 |
|
 |
|
IF3_C |
Translation initiation factor IF-3, C-terminal domain |
PF00707 |
IPR019815 |
|
 |
|
DNA_pol3_beta |
DNA polymerase III beta subunit, N-terminal domain |
PF00712 |
IPR022634 |
|
 |
|
DnaB |
DnaB-like helicase N terminal domain |
PF00772 |
IPR007693 |
|
 |
|
DSPc |
Dual specificity phosphatase, catalytic domain |
PF00782 |
IPR000340 |
|
 |
|
IMS |
impB/mucB/samB family |
PF00817 |
IPR001126 |
|
 |
|
Ribosomal_L21p |
Ribosomal prokaryotic L21 protein |
PF00829 |
IPR001787 |
|
 |
|
Ribosomal_L28 |
Ribosomal L28 family |
PF00830 |
IPR001383 |
|
 |
|
PseudoU_synth_2 |
RNA pseudouridylate synthase |
PF00849 |
IPR006145 |
|
 |
|
Ribosomal_S16 |
Ribosomal protein S16 |
PF00886 |
IPR000307 |
|
 |
|
EF_TS |
Elongation factor TS |
PF00889 |
IPR014039 |
|
 |
|
Transpeptidase |
Penicillin binding protein transpeptidase domain |
PF00905 |
IPR001460 |
|
 |
|
Transgly |
Transglycosylase |
PF00912 |
IPR001264 |
|
 |
|
RNA_pol_A_bac |
RNA polymerase Rpb3/RpoA insert domain |
PF01000 |
IPR011262 |
|
 |
|
Ribosomal_L27 |
Ribosomal L27 protein |
PF01016 |
IPR001684 |
|
 |
|
NusB |
NusB family |
PF01029 |
IPR006027 |
|
 |
|
DNA_ligase_A_M |
ATP dependent DNA ligase domain |
PF01068 |
IPR012310 |
|
 |
|
Ribosomal_S18 |
Ribosomal protein S18 |
PF01084 |
IPR001648 |
|
 |
|
FTSW_RODA_SPOVE |
Cell cycle protein |
PF01098 |
IPR001182 |
|
 |
|
DNA_mis_repair |
DNA mismatch repair protein, C-terminal domain |
PF01119 |
IPR013507 |
|
 |
|
CoaE |
Dephospho-CoA kinase |
PF01121 |
IPR001977 |
|
 |
|
EFP |
Elongation factor P (EF-P) OB domain |
PF01132 |
IPR001059 |
|
 |
|
GIDA |
Glucose inhibited division protein A |
PF01134 |
IPR002218 |
|
 |
|
CTP_transf_1 |
Cytidylyltransferase family |
PF01148 |
IPR000374 |
|
 |
|
Pept_tRNA_hydro |
Peptidyl-tRNA hydrolase |
PF01195 |
IPR001328 |
|
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|
Ribosomal_L17 |
Ribosomal protein L17 |
PF01196 |
IPR000456 |
|
 |
|
SKI |
Shikimate kinase |
PF01202 |
IPR000623 |
|
 |
|
Dus |
Dihydrouridine synthase (Dus) |
PF01207 |
IPR001269 |
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|
Mur_ligase |
Mur ligase family, catalytic domain |
PF01225 |
IPR000713 |
|
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|
Ribosomal_L19 |
Ribosomal protein L19 |
PF01245 |
IPR001857 |
|
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|
Peptidase_A8 |
Signal peptidase (SPase) II |
PF01252 |
IPR001872 |
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|
Fibrillarin |
Fibrillarin |
PF01269 |
IPR000692 |
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|
Ribosomal_L9_N |
Ribosomal protein L9, N-terminal domain |
PF01281 |
IPR020070 |
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|
Ribosomal_L15 |
Ribosomal protein L15 amino terminal region |
PF01305 |
|
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|
Pep_deformylase |
Polypeptide deformylase |
PF01327 |
IPR000181 |
|
 |
|
5_3_exonuc |
5'-3' exonuclease, C-terminal SAM fold |
PF01367 |
IPR020047 |
|
 |
|
Peptidase_M41 |
Peptidase family M41 |
PF01434 |
IPR000642 |
|
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|
LysM |
LysM domain |
PF01476 |
IPR018392 |
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|
Acyltransferase |
Acyltransferase |
PF01553 |
IPR002123 |
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 |
|
Ribosomal_L35p |
Ribosomal protein L35 |
PF01632 |
IPR021137 |
|
 |
|
DUF28 |
Domain of unknown function DUF28 |
PF01709 |
IPR002876 |
|
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|
IPPT |
IPP transferase |
PF01715 |
IPR002627 |
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|
PolyA_pol |
Poly A polymerase head domain |
PF01743 |
IPR002646 |
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 |
|
tRNA_m1G_MT |
tRNA (Guanine-1)-methyltransferase |
PF01746 |
IPR016009 |
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RRF |
Ribosome recycling factor |
PF01765 |
IPR002661 |
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|
RimM |
RimM N-terminal domain |
PF01782 |
IPR002676 |
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|
LGT |
Prolipoprotein diacylglyceryl transferase |
PF01790 |
IPR001640 |
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Methyltransf_5 |
MraW methylase family |
PF01795 |
IPR002903 |
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|
zf-CHC2 |
CHC2 zinc finger |
PF01807 |
IPR002694 |
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XRCC1_N |
XRCC1 N terminal domain |
PF01834 |
IPR002706 |
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NTP_transf_2 |
Nucleotidyltransferase domain |
PF01909 |
IPR002934 |
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W2 |
eIF4-gamma/eIF5/eIF2-epsilon |
PF02020 |
IPR003307 |
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60KD_IMP |
60Kd inner membrane protein |
PF02096 |
IPR001708 |
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E2F_TDP |
E2F/DP family winged-helix DNA-binding domain |
PF02319 |
IPR003316 |
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NusG |
Transcription termination factor nusG |
PF02357 |
IPR006645 |
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UPF0079 |
Uncharacterised P-loop hydrolase UPF0079 |
PF02367 |
IPR003442 |
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Methyltransf_4 |
Putative methyltransferase |
PF02390 |
IPR003358 |
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DUF143 |
Domain of unknown function DUF143 |
PF02410 |
IPR004394 |
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5_3_exonuc_N |
5'-3' exonuclease, N-terminal resolvase-like domain |
PF02739 |
IPR020046 |
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DNA_pol3_beta_2 |
DNA polymerase III beta subunit, central domain |
PF02767 |
IPR022637 |
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DNA_pol3_beta_3 |
DNA polymerase III beta subunit, C-terminal domain |
PF02768 |
IPR022635 |
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Transket_pyr |
Transketolase, pyrimidine binding domain |
PF02779 |
IPR005475 |
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Ketoacyl-synt_C |
Beta-ketoacyl synthase, C-terminal domain |
PF02801 |
IPR014031 |
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MIF4G |
MIF4G domain |
PF02854 |
IPR003890 |
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MurB_C |
UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain |
PF02873 |
IPR011601 |
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 |
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PARP_reg |
Poly(ADP-ribose) polymerase, regulatory domain |
PF02877 |
IPR004102 |
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 |
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Formyl_trans_C |
Formyl transferase, C-terminal domain |
PF02911 |
IPR005793 |
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 |
|
Phe_tRNA-synt_N |
Aminoacyl tRNA synthetase class II, N-terminal domain |
PF02912 |
IPR004188 |
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 |
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NIF |
NLI interacting factor-like phosphatase |
PF03031 |
IPR004274 |
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 |
|
Glyco_transf_28 |
Glycosyltransferase family 28 N-terminal domain |
PF03033 |
IPR004276 |
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 |
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tRNA_Me_trans |
tRNA methyl transferase |
PF03054 |
|
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|
FDX-ACB |
Ferredoxin-fold anticodon binding domain |
PF03147 |
IPR005121 |
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 |
|
TRCF |
TRCF domain |
PF03461 |
IPR005118 |
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 |
|
PCRF |
PCRF domain |
PF03462 |
IPR005139 |
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 |
|
CorC_HlyC |
Transporter associated domain |
PF03471 |
IPR005170 |
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 |
|
Cons_hypoth95 |
Conserved hypothetical protein 95 |
PF03602 |
IPR004398 |
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 |
|
PBP_dimer |
Penicillin-binding Protein dimerisation domain |
PF03717 |
IPR005311 |
|
 |
|
DnaB_C |
DnaB-like helicase C terminal domain |
PF03796 |
IPR007694 |
|
 |
|
SecG |
Preprotein translocase SecG subunit |
PF03840 |
IPR004692 |
|
 |
|
Nup84_Nup100 |
Nuclear pore protein 84 / 107 |
PF04121 |
IPR007252 |
|
 |
|
Rad9 |
Rad9 |
PF04139 |
IPR007268 |
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 |
|
DNA_ligase_A_N |
DNA ligase N terminus |
PF04675 |
IPR012308 |
|
 |
|
DNA_ligase_A_C |
ATP dependent DNA ligase C terminal region |
PF04679 |
IPR012309 |
|
 |
|
WGR |
WGR domain |
PF05406 |
IPR008893 |
|
 |
|
zf-DBF |
DBF zinc finger |
PF07535 |
IPR006572 |
|
 |
|
ChAPs |
ChAPs (Chs5p-Arf1p-binding proteins) |
PF09295 |
IPR015374 |
|
 |
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