Pfam ID Description Accession Interpro ID GO ID
TFIIB Transcription factor TFIIB repeat PF00382 IPR013150
GO:0003743
GO:0005515
GO:0006413



TFIIB forms interactions with

Pfam ID Description Accession Interpro ID GO ID Notes Source
TBP Transcription factor TFIID (or TATA-binding protein, TBP) PF00352 IPR000814
GO:0003677
GO:0003702
GO:0006355
GO:0006367
 PDB IPFAM 3DID PE GPE DIPD INSITE DIMA
TFIIB Transcription factor TFIIB repeat PF00382 IPR013150
GO:0003743
GO:0005515
GO:0006413
 PDB IPFAM 3DID ME
RNA_pol_Rpb2_1 RNA polymerase beta subunit PF04563 IPR007644
GO:0003677
GO:0003899
GO:0006350
 PDB 3DID
Ribosomal_60s 60s Acidic ribosomal protein PF00428 IPR001813
GO:0003735
GO:0005622
GO:0005840
GO:0006414
 HCP RCDP RDFF INSITE DIMA
eIF-5_eIF-2B Domain found in IF2B/IF5 PF01873 IPR002735
GO:0003743
GO:0006413
 HCP RCDP DIPD DIMA
Actin Actin PF00022 IPR004000
GO:0005515
 MCP PVALUE INSITE
Arf ADP-ribosylation factor family PF00025 IPR006689
GO:0005525
 MCP RCDP INSITE
Ras Ras family PF00071 IPR013753
MCP RDFF INSITE
Aldedh Aldehyde dehydrogenase family PF00171 IPR015590
GO:0008152
GO:0016491
GO:0055114
 MCP RCDP DIPD INSITE
Thymidylat_synt Thymidylate synthase PF00303 IPR000398
GO:0004799
GO:0006231
 MCP DIPD INSITE
DUP DUP family PF00674 IPR001142
MCP RDFF INSITE
eIF-1a Translation initiation factor 1A / IF-1 PF01176 IPR006196
GO:0003723
GO:0003743
GO:0006413
 MCP DIMA
Ribosomal_S7e Ribosomal protein S7e PF01251 IPR000554
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 MCP RCDP DIPD INSITE
DLH Dienelactone hydrolase family PF01738 IPR002925
GO:0016787
 MCP RCDP DIPD INSITE
TFIIA_gamma_N Transcription initiation factor IIA, gamma subunit, helical domain PF02268 IPR015872
GO:0003702
GO:0005672
GO:0006367
 MCP RCDP DIPD
EAP30 EAP30/Vps36 family PF04157 IPR007286
MCP RCDP DIPD
Ank Ankyrin repeat PF00023 IPR002110
LCP PVALUE
cNMP_binding Cyclic nucleotide-binding domain PF00027 IPR000595
LCP RCDP
RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) PF00076 IPR000504
GO:0003676
 LCP RDFF
zf-C2H2 Zinc finger, C2H2 type PF00096 IPR007087
GO:0005622
GO:0008270
 LCP RDFF
zf-C3HC4 Zinc finger, C3HC4 type (RING finger) PF00097 IPR018957
LCP PVALUE
Alpha-amylase Alpha amylase, catalytic domain PF00128 IPR006047
GO:0003824
GO:0005975
GO:0043169
 LCP RCDP
Metallophos Calcineurin-like phosphoesterase PF00149 IPR004843
GO:0016787
 LCP RDFF
SCP SCP-like extracellular protein PF00188 IPR014044
LCP INSITE
Proteasome Proteasome A-type and B-type PF00227 IPR001353
GO:0004298
GO:0005839
GO:0051603
 LCP DIMA
ubiquitin Ubiquitin family PF00240 IPR000626
LCP RDFF
Ribonuc_red_lgN Ribonucleotide reductase, all-alpha domain PF00317 IPR013509
GO:0004748
GO:0005524
GO:0006260
GO:0055114
 LCP RDFF
WW WW domain PF00397 IPR001202
GO:0005515
 LCP RDFF
WD40 WD domain, G-beta repeat PF00400 IPR019781
LCP RDFF
MCM MCM2/3/5 family PF00493 IPR001208
GO:0003677
GO:0005524
GO:0006260
 LCP DIMA
Rotamase PPIC-type PPIASE domain PF00639 IPR000297
GO:0016853
 LCP RCDP
SRP1_TIP1 Seripauperin and TIP1 family PF00660 IPR000992
GO:0006950
 LCP INSITE
EF1_GNE EF-1 guanine nucleotide exchange domain PF00736 IPR014038
GO:0003746
GO:0005853
GO:0006414
 LCP DIMA
XPG_N XPG N-terminal domain PF00752 IPR006085
GO:0004518
GO:0006281
 LCP DIMA
Ribosomal_L15e Ribosomal L15 PF00827 IPR000439
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
Ribosomal_L39 Ribosomal L39 protein PF00832 IPR000077
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
XPG_I XPG I-region PF00867 IPR006086
GO:0004518
GO:0006281
 LCP DIMA
ThiF ThiF family PF00899 IPR000594
GO:0003824
 LCP RCDP
Ribosomal_S4e Ribosomal family S4e PF00900 IPR013845
LCP DIMA
Ribosomal_L44 Ribosomal protein L44 PF00935 IPR000552
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
FAD_binding_6 Oxidoreductase FAD-binding domain PF00970 IPR008333
GO:0016491
GO:0055114
 LCP INSITE
Ribosomal_S3Ae Ribosomal S3Ae family PF01015 IPR001593
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
Ribosomal_S19e Ribosomal protein S19e PF01090 IPR001266
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
Ribosomal_S6e Ribosomal protein S6e PF01092 IPR001377
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
TFIIS_C Transcription factor S-II (TFIIS) PF01096 IPR001222
GO:0003676
GO:0008270
GO:0030528
GO:0045449
 LCP DIMA
Ribosomal_L21e Ribosomal protein L21e PF01157 IPR001147
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
ATP_bind_3 PP-loop family PF01171 IPR011063
LCP DIMA
SBDS Shwachman-Bodian-Diamond syndrome (SBDS) protein PF01172 IPR019783
LCP DIMA
RNA_pol_Rpb5_C RNA polymerase Rpb5, C-terminal domain PF01191 IPR000783
GO:0003677
GO:0003899
GO:0006350
 LCP DIMA
RNA_pol_L RNA polymerase Rpb3/Rpb11 dimerisation domain PF01193 IPR011261
GO:0003899
GO:0006350
GO:0046983
 LCP DIMA
RNA_pol_N RNA polymerases N / 8 kDa subunit PF01194 IPR000268
GO:0003677
GO:0003899
GO:0006351
 LCP DIMA
Ribosomal_L31e Ribosomal protein L31e PF01198 IPR000054
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
Ribosomal_S28e Ribosomal protein S28e PF01200 IPR000289
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
Ribosomal_S8e Ribosomal protein S8e PF01201 IPR022309
LCP DIMA
Ribosomal_L24e Ribosomal protein L24e PF01246 IPR000988
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
Fibrillarin Fibrillarin PF01269 IPR000692
GO:0003723
GO:0006364
GO:0008033
GO:0008168
 LCP DIMA
Ribosomal_L19e Ribosomal protein L19e PF01280 IPR000196
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
Ribosomal_S24e Ribosomal protein S24e PF01282 IPR001976
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
PCI PCI domain PF01399 IPR000717
LCP RDFF
LSM LSM domain PF01423 IPR001163
LCP DIMA
GXGXG GXGXG motif PF01493 IPR002489
GO:0008152
GO:0016491
GO:0055114
 LCP RDFF
Ribosomal_S27 Ribosomal protein S27a PF01599 IPR002906
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
Ribosomal_L32e Ribosomal protein L32 PF01655 IPR001515
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
Ribosomal_S27e Ribosomal protein S27 PF01667 IPR000592
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
RRF Ribosome recycling factor PF01765 IPR002661
GO:0006412
 LCP INSITE
Ribosomal_L37ae Ribosomal L37ae protein family PF01780 IPR002674
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
Nop Putative snoRNA binding domain PF01798 IPR002687
LCP DIMA
DUF46 Putative integral membrane protein DUF46 PF01864 IPR002726
LCP DIMA
Diphthamide_syn Putative diphthamide synthesis protein PF01866 IPR002728
LCP DIMA
Hjc Archaeal holliday junction resolvase (hjc) PF01870 IPR002732
LCP DIMA
AMMECR1 AMMECR1 PF01871 IPR002733
LCP DIMA
Memo Memo-like protein PF01875 IPR002737
LCP DIMA
DUF54 Protein of unknown function DUF54 PF01877 IPR002739
LCP DIMA
DNA_primase_S Eukaryotic and archaeal DNA primase small subunit PF01896 IPR002755
GO:0003896
GO:0006269
 LCP DIMA
ATP_bind_4 ATP-binding region PF01902 IPR002761
LCP DIMA
Ribosomal_L37e Ribosomal protein L37e PF01907 IPR001569
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
eIF-6 eIF-6 family PF01912 IPR002769
GO:0042256
GO:0043022
 LCP DIMA
DS Deoxyhypusine synthase PF01916 IPR002773
GO:0008612
 LCP DIMA
Prefoldin_2 Prefoldin subunit PF01920 IPR002777
GO:0006457
GO:0016272
GO:0051082
 LCP DIMA
SRP19 SRP19 protein PF01922 IPR002778
GO:0006614
GO:0008312
GO:0048500
 LCP DIMA
Thi4 Thi4 family PF01946
LCP DIMA
tRNA_int_endo tRNA intron endonuclease, catalytic C-terminal domain PF01974 IPR006677
GO:0000213
GO:0006388
 LCP DIMA
PTH2 Peptidyl-tRNA hydrolase PTH2 PF01981 IPR002833
GO:0004045
GO:0006412
 LCP DIMA
CTP-dep_RFKase Domain of unknown function DUF120 PF01982 IPR002834
GO:0000166
GO:0000287
GO:0008531
GO:0009398
 LCP DIMA
dsDNA_bind Double-stranded DNA-binding domain PF01984 IPR002836
GO:0003677
 LCP DIMA
TFIIE_alpha TFIIE alpha subunit PF02002
LCP DIMA
TRM N2,N2-dimethylguanosine tRNA methyltransferase PF02005 IPR002905
GO:0003723
GO:0004809
GO:0008033
 LCP DIMA
DUF137 Protein of unknown function DUF137 PF02006 IPR002855
LCP DIMA
W2 eIF4-gamma/eIF5/eIF2-epsilon PF02020 IPR003307
LCP RDFF
UBACT Repeat in ubiquitin-activating (UBA) protein PF02134 IPR000127
GO:0005524
GO:0006464
GO:0008641
 LCP DIPD
RNA_POL_M_15KD RNA polymerases M/15 Kd subunit PF02150 IPR001529
GO:0003677
GO:0003899
GO:0006350
 LCP DIMA
CDC48_N Cell division protein 48 (CDC48), N-terminal domain PF02359 IPR003338
GO:0005524
 LCP DIMA
Met_10 Met-10+ like-protein PF02475 IPR003402
LCP DIMA
Zip ZIP Zinc transporter PF02535 IPR003689
GO:0016020
GO:0030001
GO:0046873
GO:0055085
 LCP INSITE
DUF171 Uncharacterized ACR, COG2106 PF02598 IPR003750
LCP DIMA
TYW3 Methyltransferase TYW3 PF02676 IPR003827
LCP DIMA
ERCC4 ERCC4 domain PF02732 IPR006166
GO:0003677
GO:0004518
GO:0005515
GO:0006259
 LCP DIMA
CDC48_2 Cell division protein 48 (CDC48), domain 2 PF02933 IPR004201
GO:0005524
 LCP DIMA
Prefoldin Prefoldin subunit PF02996 IPR004127
GO:0006457
GO:0016272
GO:0051082
 LCP DIMA
ATP_bind_1 Conserved hypothetical ATP binding protein PF03029 IPR004130
GO:0000166
 LCP DIMA
TFIIA Transcription factor IIA, alpha/beta subunit PF03153 IPR004855
GO:0003702
GO:0005672
GO:0006367
 LCP INSITE
zf-ZPR1 ZPR1 zinc-finger domain PF03367 IPR004457
GO:0005515
GO:0008270
 LCP DIMA
eRF1_1 eRF1 domain 1 PF03463 IPR005140
LCP DIMA
eRF1_2 eRF1 domain 2 PF03464 IPR005141
LCP DIMA
eRF1_3 eRF1 domain 3 PF03465 IPR005142
LCP DIMA
EMG1 EMG1/NEP1 methyltransferase PF03587 IPR005304
LCP DIMA
Mtc Tricarboxylate carrier PF03820 IPR004686
GO:0006812
GO:0008324
GO:0016020
GO:0055085
 LCP INSITE
Sec62 Translocation protein Sec62 PF03839 IPR004728
GO:0008565
GO:0015031
GO:0016021
 LCP INSITE
Rcd1 Cell differentiation family, Rcd1-like PF04078 IPR007216
LCP INSITE
Psf2 Partner of SLD five, PSF2 PF04128
LCP INSITE
Spc97_Spc98 Spc97 / Spc98 family PF04130 IPR007259
GO:0000226
GO:0000922
GO:0005815
 LCP INSITE
zf-HIT HIT zinc finger PF04438 IPR007529
LCP GPE
RTA1 RTA1 like protein PF04479 IPR007568
GO:0006950
GO:0016021
 LCP INSITE
Rft-1 Rft protein PF04506 IPR007594
GO:0005319
GO:0006869
GO:0016021
 LCP INSITE
ATP-synt_G Mitochondrial ATP synthase g subunit PF04718 IPR006808
GO:0000276
GO:0015078
GO:0015986
 LCP INSITE
OST3_OST6 OST3 / OST6 family PF04756 IPR021149
LCP INSITE
PEX11 Peroxisomal biogenesis factor 11 (PEX11) PF05648
LCP INSITE
Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase PF07992 IPR013027
LCP RCDP
NBP1 Fungal Nap binding protein NBP1 PF08537 IPR013743
LCP INSITE
NCA2 ATP synthase regulation protein NCA2 PF08637 IPR013946
LCP INSITE
DUF1892 Protein of unknown function (DUF1892) PF08987 IPR015080
LCP INSITE



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