Pfam ID Description Accession Interpro ID GO ID
TBP Transcription factor TFIID (or TATA-binding protein, TBP) PF00352 IPR000814
GO:0003677
GO:0003702
GO:0006355
GO:0006367



TBP forms interactions with

Pfam ID Description Accession Interpro ID GO ID Notes Source
TBP Transcription factor TFIID (or TATA-binding protein, TBP) PF00352 IPR000814
GO:0003677
GO:0003702
GO:0006355
GO:0006367
PDB IPFAM 3DID ME
TFIIB Transcription factor TFIIB repeat PF00382 IPR013150
GO:0003743
GO:0005515
GO:0006413
PDB IPFAM 3DID PE GPE DIPD INSITE DIMA
CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone PF00808 IPR003958
GO:0005622
GO:0043565
PDB IPFAM 3DID
TFIIA_gamma_C Transcription initiation factor IIA, gamma subunit, beta-barrel domain PF02751 IPR015871
GO:0003702
GO:0005672
GO:0006367
PDB IPFAM 3DID ME DIPD INSITE
TFIIA Transcription factor IIA, alpha/beta subunit PF03153 IPR004855
GO:0003702
GO:0005672
GO:0006367
PDB IPFAM 3DID ME PVALUE DPEA PE INSITE
BRF1 Brf1-like TBP-binding domain PF07741 IPR011665
GO:0005634
GO:0008270
GO:0016563
GO:0045941
PDB IPFAM 3DID
TBP-binding TATA box-binding protein binding PF09247 IPR009067
PDB IPFAM 3DID
bZIP_1 bZIP transcription factor PF00170 IPR011616
GO:0003700
GO:0006355
GO:0043565
GO:0046983
HCP DPEA PE INSITE
TFIIA_gamma_N Transcription initiation factor IIA, gamma subunit, helical domain PF02268 IPR015872
GO:0003702
GO:0005672
GO:0006367
HCP ME RCDP PVALUE DIPD INSITE
TFIIF_beta Transcription initiation factor IIF, beta subunit PF02270 IPR003196
GO:0003702
GO:0005524
GO:0005674
GO:0006367
HCP ME
NOT2_3_5 NOT2 / NOT3 / NOT5 family PF04153 IPR007282
GO:0005634
GO:0030528
GO:0045449
HCP DPEA PE GPE INSITE
HLH Helix-loop-helix DNA-binding domain PF00010 IPR001092
GO:0030528
GO:0045449
MCP RDFF INSITE
Zn_clus Fungal Zn(2)-Cys(6) binuclear cluster domain PF00172 IPR001138
GO:0003700
GO:0005634
GO:0006355
GO:0008270
MCP RDFF
Myb_DNA-binding Myb-like DNA-binding domain PF00249 IPR014778
MCP DPEA PE RDFF
PFK Phosphofructokinase PF00365 IPR000023
GO:0003872
GO:0005945
GO:0006096
MCP RCDP DIPD
TFIID-18kDa Transcription initiation factor IID, 18kD subunit PF02269 IPR003195
GO:0003702
GO:0006366
MCP PE GPE INSITE
TFIID_20kDa Transcription initiation factor TFIID subunit A PF03847 IPR003228
GO:0005669
GO:0006352
GO:0016986
MCP DPEA PE GPE
Tfb2 Transcription factor Tfb2 PF03849 IPR004598
GO:0003702
GO:0005634
GO:0006281
GO:0006355
MCP INSITE
TAFII55_N TAFII55 protein conserved region PF04658 IPR006751
GO:0005669
GO:0006367
GO:0016251
MCP INSITE
TFIIB_Zn_Ribbon TFIIB zinc-binding PF08271 IPR013137
GO:0008270
GO:0045449
MCP RCDP DIPD INSITE
AAA ATPase family associated with various cellular activities (AAA) PF00004 IPR003959
GO:0005524
LCP RDFF
RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) PF00076 IPR000504
GO:0003676
LCP INSITE
zf-C2H2 Zinc finger, C2H2 type PF00096 IPR007087
GO:0005622
GO:0008270
LCP PE
Histone Core histone H2A/H2B/H3/H4 PF00125 IPR007125
GO:0003677
LCP INSITE
HSP90 Hsp90 protein PF00183 IPR020576
LCP INSITE
Proteasome Proteasome A-type and B-type PF00227 IPR001353
GO:0004298
GO:0005839
GO:0051603
LCP DIMA
Dynamin_N Dynamin family PF00350 IPR001401
GO:0003924
GO:0005525
LCP DIPD
WD40 WD domain, G-beta repeat PF00400 IPR019781
LCP RDFF
Ribosomal_60s 60s Acidic ribosomal protein PF00428 IPR001813
GO:0003735
GO:0005622
GO:0005840
GO:0006414
LCP DIMA
MCM MCM2/3/5 family PF00493 IPR001208
GO:0003677
GO:0005524
GO:0006260
LCP DIMA
EF1_GNE EF-1 guanine nucleotide exchange domain PF00736 IPR014038
GO:0003746
GO:0005853
GO:0006414
LCP DIMA
XPG_N XPG N-terminal domain PF00752 IPR006085
GO:0004518
GO:0006281
LCP DIMA
Ribosomal_L15e Ribosomal L15 PF00827 IPR000439
GO:0003735
GO:0005622
GO:0005840
GO:0006412
LCP DIMA
Ribosomal_L39 Ribosomal L39 protein PF00832 IPR000077
GO:0003735
GO:0005622
GO:0005840
GO:0006412
LCP DIMA
XPG_I XPG I-region PF00867 IPR006086
GO:0004518
GO:0006281
LCP DIMA
Ribosomal_S4e Ribosomal family S4e PF00900 IPR013845
LCP DIMA
Ribosomal_L44 Ribosomal protein L44 PF00935 IPR000552
GO:0003735
GO:0005622
GO:0005840
GO:0006412
LCP DIMA
Ribosomal_S3Ae Ribosomal S3Ae family PF01015 IPR001593
GO:0003735
GO:0005622
GO:0005840
GO:0006412
LCP DIMA
Dynamin_M Dynamin central region PF01031 IPR000375
GO:0005525
LCP DIPD
Ribosomal_S19e Ribosomal protein S19e PF01090 IPR001266
GO:0003735
GO:0005622
GO:0005840
GO:0006412
LCP DIMA
Ribosomal_S6e Ribosomal protein S6e PF01092 IPR001377
GO:0003735
GO:0005622
GO:0005840
GO:0006412
LCP DIMA
TFIIS_C Transcription factor S-II (TFIIS) PF01096 IPR001222
GO:0003676
GO:0008270
GO:0030528
GO:0045449
LCP DIMA
Ribosomal_L21e Ribosomal protein L21e PF01157 IPR001147
GO:0003735
GO:0005622
GO:0005840
GO:0006412
LCP DIMA
ATP_bind_3 PP-loop family PF01171 IPR011063
LCP DIMA
SBDS Shwachman-Bodian-Diamond syndrome (SBDS) protein PF01172 IPR019783
LCP DIMA
eIF-1a Translation initiation factor 1A / IF-1 PF01176 IPR006196
GO:0003723
GO:0003743
GO:0006413
LCP DIMA
RNA_pol_Rpb5_C RNA polymerase Rpb5, C-terminal domain PF01191 IPR000783
GO:0003677
GO:0003899
GO:0006350
LCP DIMA
RNA_pol_L RNA polymerase Rpb3/Rpb11 dimerisation domain PF01193 IPR011261
GO:0003899
GO:0006350
GO:0046983
LCP DIMA
RNA_pol_N RNA polymerases N / 8 kDa subunit PF01194 IPR000268
GO:0003677
GO:0003899
GO:0006351
LCP DIMA
Ribosomal_L31e Ribosomal protein L31e PF01198 IPR000054
GO:0003735
GO:0005622
GO:0005840
GO:0006412
LCP DIMA
Ribosomal_S28e Ribosomal protein S28e PF01200 IPR000289
GO:0003735
GO:0005622
GO:0005840
GO:0006412
LCP DIMA
Ribosomal_S8e Ribosomal protein S8e PF01201 IPR022309
LCP DIMA
CAP_N Adenylate cyclase associated (CAP) N terminal PF01213 IPR013992
GO:0003779
GO:0007010
LCP INSITE
Ribosomal_L24e Ribosomal protein L24e PF01246 IPR000988
GO:0003735
GO:0005622
GO:0005840
GO:0006412
LCP DIMA
Fibrillarin Fibrillarin PF01269 IPR000692
GO:0003723
GO:0006364
GO:0008033
GO:0008168
LCP DIMA
Ribosomal_L19e Ribosomal protein L19e PF01280 IPR000196
GO:0003735
GO:0005622
GO:0005840
GO:0006412
LCP DIMA
Ribosomal_S24e Ribosomal protein S24e PF01282 IPR001976
GO:0003735
GO:0005622
GO:0005840
GO:0006412
LCP DIMA
LSM LSM domain PF01423 IPR001163
LCP DIMA
Ribosomal_S27 Ribosomal protein S27a PF01599 IPR002906
GO:0003735
GO:0005622
GO:0005840
GO:0006412
LCP DIMA
Ribosomal_L32e Ribosomal protein L32 PF01655 IPR001515
GO:0003735
GO:0005622
GO:0005840
GO:0006412
LCP DIMA
Ribosomal_S27e Ribosomal protein S27 PF01667 IPR000592
GO:0003735
GO:0005622
GO:0005840
GO:0006412
LCP DIMA
Ribosomal_L37ae Ribosomal L37ae protein family PF01780 IPR002674
GO:0003735
GO:0005622
GO:0005840
GO:0006412
LCP DIMA
Nop Putative snoRNA binding domain PF01798 IPR002687
LCP DIMA
DUF46 Putative integral membrane protein DUF46 PF01864 IPR002726
LCP DIMA
Diphthamide_syn Putative diphthamide synthesis protein PF01866 IPR002728
LCP DIMA
Hjc Archaeal holliday junction resolvase (hjc) PF01870 IPR002732
LCP DIMA
AMMECR1 AMMECR1 PF01871 IPR002733
LCP DIMA
eIF-5_eIF-2B Domain found in IF2B/IF5 PF01873 IPR002735
GO:0003743
GO:0006413
LCP DIMA
Memo Memo-like protein PF01875 IPR002737
LCP DIMA
DUF54 Protein of unknown function DUF54 PF01877 IPR002739
LCP DIMA
DNA_primase_S Eukaryotic and archaeal DNA primase small subunit PF01896 IPR002755
GO:0003896
GO:0006269
LCP DIMA
ATP_bind_4 ATP-binding region PF01902 IPR002761
LCP DIMA
Ribosomal_L37e Ribosomal protein L37e PF01907 IPR001569
GO:0003735
GO:0005622
GO:0005840
GO:0006412
LCP DIMA
eIF-6 eIF-6 family PF01912 IPR002769
GO:0042256
GO:0043022
LCP DIMA
DS Deoxyhypusine synthase PF01916 IPR002773
GO:0008612
LCP DIMA
Prefoldin_2 Prefoldin subunit PF01920 IPR002777
GO:0006457
GO:0016272
GO:0051082
LCP DIMA
SRP19 SRP19 protein PF01922 IPR002778
GO:0006614
GO:0008312
GO:0048500
LCP DIMA
Thi4 Thi4 family PF01946
LCP DIMA
tRNA_int_endo tRNA intron endonuclease, catalytic C-terminal domain PF01974 IPR006677
GO:0000213
GO:0006388
LCP DIMA
PTH2 Peptidyl-tRNA hydrolase PTH2 PF01981 IPR002833
GO:0004045
GO:0006412
LCP DIMA
CTP-dep_RFKase Domain of unknown function DUF120 PF01982 IPR002834
GO:0000166
GO:0000287
GO:0008531
GO:0009398
LCP DIMA
dsDNA_bind Double-stranded DNA-binding domain PF01984 IPR002836
GO:0003677
LCP DIMA
TFIIE_alpha TFIIE alpha subunit PF02002
LCP DIMA
TRM N2,N2-dimethylguanosine tRNA methyltransferase PF02005 IPR002905
GO:0003723
GO:0004809
GO:0008033
LCP DIMA
DUF137 Protein of unknown function DUF137 PF02006 IPR002855
LCP DIMA
RNA_POL_M_15KD RNA polymerases M/15 Kd subunit PF02150 IPR001529
GO:0003677
GO:0003899
GO:0006350
LCP DIMA
GED Dynamin GTPase effector domain PF02212 IPR003130
GO:0003924
GO:0005525
LCP RCDP
HORMA HORMA domain PF02301 IPR003511
GO:0007067
LCP DPEA PE
CDC48_N Cell division protein 48 (CDC48), N-terminal domain PF02359 IPR003338
GO:0005524
LCP DIMA
Met_10 Met-10+ like-protein PF02475 IPR003402
LCP DIMA
HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PF02518 IPR003594
GO:0005524
LCP INSITE
DUF171 Uncharacterized ACR, COG2106 PF02598 IPR003750
LCP DIMA
TYW3 Methyltransferase TYW3 PF02676 IPR003827
LCP DIMA
ERCC4 ERCC4 domain PF02732 IPR006166
GO:0003677
GO:0004518
GO:0005515
GO:0006259
LCP DIMA
CDC48_2 Cell division protein 48 (CDC48), domain 2 PF02933 IPR004201
GO:0005524
LCP DIMA
TAF TATA box binding protein associated factor (TAF) PF02969 IPR004823
GO:0005634
GO:0006352
GO:0016986
LCP GPE
Prefoldin Prefoldin subunit PF02996 IPR004127
GO:0006457
GO:0016272
GO:0051082
LCP DIMA
ATP_bind_1 Conserved hypothetical ATP binding protein PF03029 IPR004130
GO:0000166
LCP DIMA
zf-ZPR1 ZPR1 zinc-finger domain PF03367 IPR004457
GO:0005515
GO:0008270
LCP DIMA
eRF1_1 eRF1 domain 1 PF03463 IPR005140
LCP DIMA
eRF1_2 eRF1 domain 2 PF03464 IPR005141
LCP DIMA
eRF1_3 eRF1 domain 3 PF03465 IPR005142
LCP DIMA
TFIID_30kDa Transcription initiation factor TFIID 23-30kDa subunit PF03540 IPR003923
GO:0003702
GO:0005634
GO:0006352
LCP RDFF
EMG1 EMG1/NEP1 methyltransferase PF03587 IPR005304
LCP DIMA
Pex19 Pex19 protein family PF04614 IPR006708
GO:0005777
LCP INSITE
TAF4 Transcription initiation factor TFIID component TAF4 family PF05236 IPR007900
GO:0005669
GO:0006352
GO:0016986
LCP INSITE
Bromo_TP Bromodomain associated PF07524 IPR006565
LCP INSITE
DUF1546 Protein of unknown function (DUF1546) PF07571 IPR011442
GO:0003702
GO:0005634
GO:0016986
GO:0051090
LCP GPE
CAP_C DE Adenylate cyclase associated (CAP) C terminal PF08603 IPR013912
GO:0003779
GO:0007010
LCP INSITE




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