Pfam ID Description Accession Interpro ID GO ID
TFIIS_C Transcription factor S-II (TFIIS) PF01096 IPR001222
GO:0003676
GO:0008270
GO:0030528
GO:0045449



TFIIS_C forms interactions with

Pfam ID Description Accession Interpro ID GO ID Notes Source
RNA_pol_Rpb2_6 RNA polymerase Rpb2, domain 6 PF00562 IPR007120
GO:0003677
GO:0003899
GO:0006350
 PDB IPFAM 3DID GPE
RNA_pol_Rpb1_2 RNA polymerase Rpb1, domain 2 PF00623 IPR000722
GO:0003677
GO:0003899
GO:0006350
 PDB IPFAM GPE RDFF
RNA_POL_M_15KD RNA polymerases M/15 Kd subunit PF02150 IPR001529
GO:0003677
GO:0003899
GO:0006350
 PDB IPFAM ME FUSION DIMA
RNA_pol_Rpb2_2 RNA polymerase Rpb2, domain 2 PF04561 IPR007642
GO:0003677
GO:0003899
GO:0006350
 PDB IPFAM 3DID GPE
RNA_pol_Rpb2_1 RNA polymerase beta subunit PF04563 IPR007644
GO:0003677
GO:0003899
GO:0006350
 PDB 3DID GPE DIPD
RNA_pol_Rpb2_3 RNA polymerase Rpb2, domain 3 PF04565 IPR007645
GO:0003677
GO:0003899
GO:0006350
 PDB IPFAM GPE
RNA_pol_Rpb2_4 RNA polymerase Rpb2, domain 4 PF04566 IPR007646
GO:0003677
GO:0003899
GO:0006350
 PDB IPFAM
RNA_pol_Rpb1_3 RNA polymerase Rpb1, domain 3 PF04983 IPR007066
GO:0003677
GO:0003899
GO:0006350
 PDB IPFAM GPE
RNA_pol_Rpb1_6 RNA polymerase Rpb1, domain 6 PF04992 IPR007075
GO:0003677
GO:0003899
GO:0006350
 PDB IPFAM GPE
RNA_pol_Rpb1_5 RNA polymerase Rpb1, domain 5 PF04998 IPR007081
GO:0003677
GO:0003899
GO:0006350
 PDB IPFAM 3DID GPE
RNA_pol_Rpb1_4 RNA polymerase Rpb1, domain 4 PF05000 IPR007083
GO:0003677
GO:0003899
GO:0006350
 PDB IPFAM 3DID GPE
RNA_pol_L RNA polymerase Rpb3/Rpb11 dimerisation domain PF01193 IPR011261
GO:0003899
GO:0006350
GO:0046983
 HCP GPE RDFF INSITE DIMA
LSM LSM domain PF01423 IPR001163
HCP RDFF INSITE DIMA
efhand EF hand PF00036 IPR018248
MCP PE INSITE
Ribosomal_S8 Ribosomal protein S8 PF00410 IPR000630
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 MCP RDFF INSITE
CoaE Dephospho-CoA kinase PF01121 IPR001977
GO:0004140
GO:0005524
GO:0015937
 MCP DIPD RDFF
RNA_pol_Rpb5_C RNA polymerase Rpb5, C-terminal domain PF01191 IPR000783
GO:0003677
GO:0003899
GO:0006350
 MCP RDFF DIMA
RNA_pol_N RNA polymerases N / 8 kDa subunit PF01194 IPR000268
GO:0003677
GO:0003899
GO:0006351
 MCP INSITE DIMA
NSF Aromatic-di-Alanine (AdAR) repeat PF02071 IPR000744
GO:0005783
GO:0005794
GO:0006886
 MCP RDFF INSITE
Tyr_Deacylase D-Tyr-tRNA(Tyr) deacylase PF02580 IPR003732
GO:0005737
GO:0016788
GO:0019478
 MCP RDFF INSITE
RNA_pol_Rpb8 RNA polymerase Rpb8 PF03870 IPR005570
GO:0006350
 MCP DIPD INSITE
RNA_pol_Rpb1_1 RNA polymerase Rpb1, domain 1 PF04997 IPR007080
GO:0003677
GO:0003899
GO:0006350
 MCP GPE DIPD
Ras Ras family PF00071 IPR013753
LCP INSITE
zf-C3HC4 Zinc finger, C3HC4 type (RING finger) PF00097 IPR018957
LCP RDFF
Mito_carr Mitochondrial carrier protein PF00153 IPR018108
LCP INSITE
UQ_con Ubiquitin-conjugating enzyme PF00179 IPR000608
GO:0019787
GO:0043687
GO:0051246
 LCP RDFF
Proteasome Proteasome A-type and B-type PF00227 IPR001353
GO:0004298
GO:0005839
GO:0051603
 LCP DIMA
TBP Transcription factor TFIID (or TATA-binding protein, TBP) PF00352 IPR000814
GO:0003677
GO:0003702
GO:0006355
GO:0006367
 LCP DIMA
TFIIB Transcription factor TFIIB repeat PF00382 IPR013150
GO:0003743
GO:0005515
GO:0006413
 LCP DIMA
Ribosomal_60s 60s Acidic ribosomal protein PF00428 IPR001813
GO:0003735
GO:0005622
GO:0005840
GO:0006414
 LCP DIMA
Ribosomal_L34 Ribosomal protein L34 PF00468 IPR000271
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP INSITE
PP2C Protein phosphatase 2C PF00481 IPR014045
LCP INSITE
MCM MCM2/3/5 family PF00493 IPR001208
GO:0003677
GO:0005524
GO:0006260
 LCP DIMA
S1 S1 RNA binding domain PF00575 IPR003029
GO:0003723
 LCP RDFF
Acetyltransf_1 Acetyltransferase (GNAT) family PF00583 IPR022610
LCP INSITE
EF1_GNE EF-1 guanine nucleotide exchange domain PF00736 IPR014038
GO:0003746
GO:0005853
GO:0006414
 LCP DIMA
XPG_N XPG N-terminal domain PF00752 IPR006085
GO:0004518
GO:0006281
 LCP DIMA
Ribosomal_L15e Ribosomal L15 PF00827 IPR000439
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
Ribosomal_L39 Ribosomal L39 protein PF00832 IPR000077
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
XPG_I XPG I-region PF00867 IPR006086
GO:0004518
GO:0006281
 LCP DIMA
DUF6 Integral membrane protein DUF6 PF00892 IPR000620
GO:0016020
 LCP RDFF
Ribosomal_S4e Ribosomal family S4e PF00900 IPR013845
LCP DIMA
Ribosomal_L44 Ribosomal protein L44 PF00935 IPR000552
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
Ribosomal_S3Ae Ribosomal S3Ae family PF01015 IPR001593
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
Ribosomal_S19e Ribosomal protein S19e PF01090 IPR001266
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
Ribosomal_S6e Ribosomal protein S6e PF01092 IPR001377
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
Sdh_cyt Succinate dehydrogenase cytochrome b subunit PF01127 IPR000701
GO:0016627
 LCP INSITE
Ribosomal_L21e Ribosomal protein L21e PF01157 IPR001147
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
ATP_bind_3 PP-loop family PF01171 IPR011063
LCP DIMA
SBDS Shwachman-Bodian-Diamond syndrome (SBDS) protein PF01172 IPR019783
LCP DIMA
eIF-1a Translation initiation factor 1A / IF-1 PF01176 IPR006196
GO:0003723
GO:0003743
GO:0006413
 LCP DIMA
RNA_pol_Rpb6 RNA polymerase Rpb6 PF01192 IPR006110
GO:0003677
GO:0003899
GO:0006351
 LCP RDFF
Ribosomal_L31e Ribosomal protein L31e PF01198 IPR000054
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
Ribosomal_S28e Ribosomal protein S28e PF01200 IPR000289
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
Ribosomal_S8e Ribosomal protein S8e PF01201 IPR022309
LCP DIMA
Ribosomal_L24e Ribosomal protein L24e PF01246 IPR000988
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
Fibrillarin Fibrillarin PF01269 IPR000692
GO:0003723
GO:0006364
GO:0008033
GO:0008168
 LCP DIMA
Ribosomal_L19e Ribosomal protein L19e PF01280 IPR000196
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
Ribosomal_S24e Ribosomal protein S24e PF01282 IPR001976
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
Ribosomal_S27 Ribosomal protein S27a PF01599 IPR002906
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
Ribosomal_L32e Ribosomal protein L32 PF01655 IPR001515
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
Ribosomal_S27e Ribosomal protein S27 PF01667 IPR000592
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
Ribosomal_L37ae Ribosomal L37ae protein family PF01780 IPR002674
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
Nop Putative snoRNA binding domain PF01798 IPR002687
LCP DIMA
DUF46 Putative integral membrane protein DUF46 PF01864 IPR002726
LCP DIMA
Diphthamide_syn Putative diphthamide synthesis protein PF01866 IPR002728
LCP DIMA
Hjc Archaeal holliday junction resolvase (hjc) PF01870 IPR002732
LCP DIMA
AMMECR1 AMMECR1 PF01871 IPR002733
LCP DIMA
eIF-5_eIF-2B Domain found in IF2B/IF5 PF01873 IPR002735
GO:0003743
GO:0006413
 LCP DIMA
Memo Memo-like protein PF01875 IPR002737
LCP DIMA
DUF54 Protein of unknown function DUF54 PF01877 IPR002739
LCP DIMA
DNA_primase_S Eukaryotic and archaeal DNA primase small subunit PF01896 IPR002755
GO:0003896
GO:0006269
 LCP DIMA
ATP_bind_4 ATP-binding region PF01902 IPR002761
LCP DIMA
Ribosomal_L37e Ribosomal protein L37e PF01907 IPR001569
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
eIF-6 eIF-6 family PF01912 IPR002769
GO:0042256
GO:0043022
 LCP DIMA
DS Deoxyhypusine synthase PF01916 IPR002773
GO:0008612
 LCP DIMA
Prefoldin_2 Prefoldin subunit PF01920 IPR002777
GO:0006457
GO:0016272
GO:0051082
 LCP DIMA
SRP19 SRP19 protein PF01922 IPR002778
GO:0006614
GO:0008312
GO:0048500
 LCP DIMA
Thi4 Thi4 family PF01946
LCP DIMA
tRNA_int_endo tRNA intron endonuclease, catalytic C-terminal domain PF01974 IPR006677
GO:0000213
GO:0006388
 LCP DIMA
PTH2 Peptidyl-tRNA hydrolase PTH2 PF01981 IPR002833
GO:0004045
GO:0006412
 LCP DIMA
CTP-dep_RFKase Domain of unknown function DUF120 PF01982 IPR002834
GO:0000166
GO:0000287
GO:0008531
GO:0009398
 LCP DIMA
dsDNA_bind Double-stranded DNA-binding domain PF01984 IPR002836
GO:0003677
 LCP DIMA
TFIIE_alpha TFIIE alpha subunit PF02002
LCP DIMA
TRM N2,N2-dimethylguanosine tRNA methyltransferase PF02005 IPR002905
GO:0003723
GO:0004809
GO:0008033
 LCP DIMA
DUF137 Protein of unknown function DUF137 PF02006 IPR002855
LCP DIMA
ParBc ParB-like nuclease domain PF02195 IPR003115
GO:0003677
 LCP INSITE
CDC48_N Cell division protein 48 (CDC48), N-terminal domain PF02359 IPR003338
GO:0005524
 LCP DIMA
Met_10 Met-10+ like-protein PF02475 IPR003402
LCP DIMA
Pantoate_transf Ketopantoate hydroxymethyltransferase PF02548 IPR003700
GO:0003864
GO:0015940
 LCP INSITE
DUF171 Uncharacterized ACR, COG2106 PF02598 IPR003750
LCP DIMA
TYW3 Methyltransferase TYW3 PF02676 IPR003827
LCP DIMA
ERCC4 ERCC4 domain PF02732 IPR006166
GO:0003677
GO:0004518
GO:0005515
GO:0006259
 LCP DIMA
CDC48_2 Cell division protein 48 (CDC48), domain 2 PF02933 IPR004201
GO:0005524
 LCP DIMA
Prefoldin Prefoldin subunit PF02996 IPR004127
GO:0006457
GO:0016272
GO:0051082
 LCP DIMA
ATP_bind_1 Conserved hypothetical ATP binding protein PF03029 IPR004130
GO:0000166
 LCP DIMA
TPT Triose-phosphate Transporter family PF03151 IPR004853
LCP INSITE
zf-ZPR1 ZPR1 zinc-finger domain PF03367 IPR004457
GO:0005515
GO:0008270
 LCP DIMA
eRF1_1 eRF1 domain 1 PF03463 IPR005140
LCP DIMA
eRF1_2 eRF1 domain 2 PF03464 IPR005141
LCP DIMA
eRF1_3 eRF1 domain 3 PF03465 IPR005142
LCP DIMA
EMG1 EMG1/NEP1 methyltransferase PF03587 IPR005304
LCP DIMA
Mob1_phocein Mob1/phocein family PF03637 IPR005301
GO:0005515
 LCP INSITE
RNA_pol_Rpb5_N RNA polymerase Rpb5, N-terminal domain PF03871 IPR005571
GO:0003677
GO:0003899
GO:0005634
GO:0006350
 LCP DIPD
DER1 Der1-like family PF04511 IPR007599
LCP INSITE
RNA_pol_Rpb2_7 RNA polymerase Rpb2, domain 7 PF04560 IPR007641
GO:0003677
GO:0003899
GO:0006350
 LCP GPE
RNA_pol_Rpb2_5 RNA polymerase Rpb2, domain 5 PF04567 IPR007647
GO:0003677
GO:0003899
GO:0006350
 LCP GPE
RNA_pol_Rpb1_7 RNA polymerase Rpb1, domain 7 PF04990 IPR007073
GO:0003677
GO:0003899
GO:0006350
 LCP GPE
RNA_pol_Rpc34 RNA polymerase Rpc34 subunit PF05158 IPR007832
GO:0003677
GO:0003899
GO:0005634
GO:0006350
 LCP INSITE
CybS CybS PF05328 IPR007992
GO:0005506
GO:0005740
GO:0006099
GO:0016021
GO:0020037
 LCP INSITE
DUF836 Glutaredoxin-like domain (DUF836) PF05768 IPR008554
LCP INSITE
Apc13p Apc13p protein PF05839 IPR008401
LCP INSITE
Spt4 Transcription elongation protein Spt4 PF06093
LCP INSITE
RNA_pol_I_A49 A49-like RNA polymerase I associated factor PF06870 IPR009668
GO:0003677
GO:0003899
GO:0005634
GO:0006350
 LCP INSITE
TFIIS_M Transcription factor S-II (TFIIS), central domain PF07500 IPR003618
GO:0006350
 LCP FUSION
MBA1 MBA1-like protein PF07961
LCP INSITE
RNA_polI_A14 Yeast RNA polymerase I subunit RPA14 PF08203
LCP INSITE
RNA_polI_A34 DNA-directed RNA polymerase I subunit RPA34.5 PF08208 IPR013240
LCP INSITE
DUF1762 Protein of unknown function (DUF1762) PF08574 IPR013883
LCP INSITE



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