Pfam ID |
Description |
Accession |
Interpro ID |
GO ID |
Notes |
Source |
PCNA_N |
Proliferating cell nuclear antigen, N-terminal domain |
PF00705 |
IPR022648 |
|
|
|
XPG_N |
XPG N-terminal domain |
PF00752 |
IPR006085 |
|
|
|
XPG_I |
XPG I-region |
PF00867 |
IPR006086 |
|
|
|
PCNA_C |
Proliferating cell nuclear antigen, C-terminal domain |
PF02747 |
IPR022649 |
|
|
|
Pkinase |
Protein kinase domain |
PF00069 |
IPR017442 |
|
|
|
Helicase_C |
Helicase conserved C-terminal domain |
PF00271 |
IPR001650 |
|
|
|
ERCC4 |
ERCC4 domain |
PF02732 |
IPR006166 |
|
|
|
EGF |
EGF-like domain |
PF00008 |
IPR006209 |
|
|
|
Ras |
Ras family |
PF00071 |
IPR013753 |
|
|
|
zf-C2H2 |
Zinc finger, C2H2 type |
PF00096 |
IPR007087 |
|
|
|
zf-C3HC4 |
Zinc finger, C3HC4 type (RING finger) |
PF00097 |
IPR018957 |
|
|
|
Proteasome |
Proteasome A-type and B-type |
PF00227 |
IPR001353 |
|
|
|
DEAD |
DEAD/DEAH box helicase |
PF00270 |
IPR011545 |
|
|
|
TBP |
Transcription factor TFIID (or TATA-binding protein, TBP) |
PF00352 |
IPR000814 |
|
|
|
TFIIB |
Transcription factor TFIIB repeat |
PF00382 |
IPR013150 |
|
|
|
Ribosomal_60s |
60s Acidic ribosomal protein |
PF00428 |
IPR001813 |
|
|
|
MCM |
MCM2/3/5 family |
PF00493 |
IPR001208 |
|
|
|
EF1_GNE |
EF-1 guanine nucleotide exchange domain |
PF00736 |
IPR014038 |
|
|
|
Ribosomal_L15e |
Ribosomal L15 |
PF00827 |
IPR000439 |
|
|
|
Ribosomal_L39 |
Ribosomal L39 protein |
PF00832 |
IPR000077 |
|
|
|
Ribosomal_S4e |
Ribosomal family S4e |
PF00900 |
IPR013845 |
|
|
|
Ribosomal_L44 |
Ribosomal protein L44 |
PF00935 |
IPR000552 |
|
|
|
Ribosomal_S3Ae |
Ribosomal S3Ae family |
PF01015 |
IPR001593 |
|
|
|
Ribosomal_S19e |
Ribosomal protein S19e |
PF01090 |
IPR001266 |
|
|
|
Ribosomal_S6e |
Ribosomal protein S6e |
PF01092 |
IPR001377 |
|
|
|
TFIIS_C |
Transcription factor S-II (TFIIS) |
PF01096 |
IPR001222 |
|
|
|
Ribosomal_L21e |
Ribosomal protein L21e |
PF01157 |
IPR001147 |
|
|
|
SBDS |
Shwachman-Bodian-Diamond syndrome (SBDS) protein |
PF01172 |
IPR019783 |
|
|
|
eIF-1a |
Translation initiation factor 1A / IF-1 |
PF01176 |
IPR006196 |
|
|
|
RNA_pol_Rpb5_C |
RNA polymerase Rpb5, C-terminal domain |
PF01191 |
IPR000783 |
|
|
|
RNA_pol_N |
RNA polymerases N / 8 kDa subunit |
PF01194 |
IPR000268 |
|
|
|
Ribosomal_L31e |
Ribosomal protein L31e |
PF01198 |
IPR000054 |
|
|
|
Ribosomal_S28e |
Ribosomal protein S28e |
PF01200 |
IPR000289 |
|
|
|
Ribosomal_S8e |
Ribosomal protein S8e |
PF01201 |
IPR022309 |
|
|
|
Ribosomal_L24e |
Ribosomal protein L24e |
PF01246 |
IPR000988 |
|
|
|
Fibrillarin |
Fibrillarin |
PF01269 |
IPR000692 |
|
|
|
Ribosomal_L19e |
Ribosomal protein L19e |
PF01280 |
IPR000196 |
|
|
|
Ribosomal_S24e |
Ribosomal protein S24e |
PF01282 |
IPR001976 |
|
|
|
LSM |
LSM domain |
PF01423 |
IPR001163 |
|
|
|
Ribosomal_S27 |
Ribosomal protein S27a |
PF01599 |
IPR002906 |
|
|
|
Ribosomal_L32e |
Ribosomal protein L32 |
PF01655 |
IPR001515 |
|
|
|
Ribosomal_S27e |
Ribosomal protein S27 |
PF01667 |
IPR000592 |
|
|
|
Ribosomal_L37ae |
Ribosomal L37ae protein family |
PF01780 |
IPR002674 |
|
|
|
Nop |
Putative snoRNA binding domain |
PF01798 |
IPR002687 |
|
|
|
DUF46 |
Putative integral membrane protein DUF46 |
PF01864 |
IPR002726 |
|
|
|
Diphthamide_syn |
Putative diphthamide synthesis protein |
PF01866 |
IPR002728 |
|
|
|
AMMECR1 |
AMMECR1 |
PF01871 |
IPR002733 |
|
|
|
eIF-5_eIF-2B |
Domain found in IF2B/IF5 |
PF01873 |
IPR002735 |
|
|
|
DNA_primase_S |
Eukaryotic and archaeal DNA primase small subunit |
PF01896 |
IPR002755 |
|
|
|
ATP_bind_4 |
ATP-binding region |
PF01902 |
IPR002761 |
|
|
|
Ribosomal_L37e |
Ribosomal protein L37e |
PF01907 |
IPR001569 |
|
|
|
eIF-6 |
eIF-6 family |
PF01912 |
IPR002769 |
|
|
|
DS |
Deoxyhypusine synthase |
PF01916 |
IPR002773 |
|
|
|
Prefoldin_2 |
Prefoldin subunit |
PF01920 |
IPR002777 |
|
|
|
SRP19 |
SRP19 protein |
PF01922 |
IPR002778 |
|
|
|
Thi4 |
Thi4 family |
PF01946 |
|
|
|
|
tRNA_int_endo |
tRNA intron endonuclease, catalytic C-terminal domain |
PF01974 |
IPR006677 |
|
|
|
PTH2 |
Peptidyl-tRNA hydrolase PTH2 |
PF01981 |
IPR002833 |
|
|
|
CTP-dep_RFKase |
Domain of unknown function DUF120 |
PF01982 |
IPR002834 |
|
|
|
dsDNA_bind |
Double-stranded DNA-binding domain |
PF01984 |
IPR002836 |
|
|
|
vATP-synt_AC39 |
ATP synthase (C/AC39) subunit |
PF01992 |
IPR002843 |
|
|
|
TFIIE_alpha |
TFIIE alpha subunit |
PF02002 |
|
|
|
|
TRM |
N2,N2-dimethylguanosine tRNA methyltransferase |
PF02005 |
IPR002905 |
|
|
|
RNA_POL_M_15KD |
RNA polymerases M/15 Kd subunit |
PF02150 |
IPR001529 |
|
|
|
CDC48_N |
Cell division protein 48 (CDC48), N-terminal domain |
PF02359 |
IPR003338 |
|
|
|
Met_10 |
Met-10+ like-protein |
PF02475 |
IPR003402 |
|
|
|
HATPase_c |
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase |
PF02518 |
IPR003594 |
|
|
|
DUF171 |
Uncharacterized ACR, COG2106 |
PF02598 |
IPR003750 |
|
|
|
TYW3 |
Methyltransferase TYW3 |
PF02676 |
IPR003827 |
|
|
|
UIM |
Ubiquitin interaction motif |
PF02809 |
IPR003903 |
|
|
|
CDC48_2 |
Cell division protein 48 (CDC48), domain 2 |
PF02933 |
IPR004201 |
|
|
|
Prefoldin |
Prefoldin subunit |
PF02996 |
IPR004127 |
|
|
|
ATP_bind_1 |
Conserved hypothetical ATP binding protein |
PF03029 |
IPR004130 |
|
|
|
zf-ZPR1 |
ZPR1 zinc-finger domain |
PF03367 |
IPR004457 |
|
|
|
eRF1_1 |
eRF1 domain 1 |
PF03463 |
IPR005140 |
|
|
|
eRF1_2 |
eRF1 domain 2 |
PF03464 |
IPR005141 |
|
|
|
eRF1_3 |
eRF1 domain 3 |
PF03465 |
IPR005142 |
|
|
|
EMG1 |
EMG1/NEP1 methyltransferase |
PF03587 |
IPR005304 |
|
|
|
ResIII |
Type III restriction enzyme, res subunit |
PF04851 |
IPR006935 |
|
|
|
EGF_CA |
Calcium binding EGF domain |
PF07645 |
IPR013091 |
|
|
|