RNA_pol_Rpb2_6

• Pfam ID: RNA_pol_Rpb2_6
• Description: RNA polymerase Rpb2, domain 6
• Accession: PF00562
• Interpro ID: IPR007120
• GO ID:

  GO:0003677

  GO:0003899

  GO:0006350

RNA_pol_Rpb2_6 forms interactions with

Pfam ID	Description	Accession	Interpro ID	GO ID	Notes	Source
RNA_pol_Rpb1_2	RNA polymerase Rpb1, domain 2	PF00623	IPR000722	GO:0003677 GO:0003899 GO:0006350
RNA_pol_A_bac	RNA polymerase Rpb3/RpoA insert domain	PF01000	IPR011262	GO:0003899 GO:0006350 GO:0046983
TFIIS_C	Transcription factor S-II (TFIIS)	PF01096	IPR001222	GO:0003676 GO:0008270 GO:0030528 GO:0045449
RNA_pol_L	RNA polymerase Rpb3/Rpb11 dimerisation domain	PF01193	IPR011261	GO:0003899 GO:0006350 GO:0046983
RNA_pol_N	RNA polymerases N / 8 kDa subunit	PF01194	IPR000268	GO:0003677 GO:0003899 GO:0006351
RNA_pol_A_CTD	Bacterial RNA polymerase, alpha chain C terminal domain	PF03118	IPR011260	GO:0003677 GO:0003899 GO:0006350
DNA_RNApol_7kD	DNA directed RNA polymerase, 7 kDa subunit	PF03604		GO:0003677 GO:0003899 GO:0006350
RNA_pol_Rpb8	RNA polymerase Rpb8	PF03870	IPR005570	GO:0006350
Sigma70_r3	Sigma-70 region 3	PF04539	IPR007624	GO:0003677 GO:0003700 GO:0006352 GO:0006355 GO:0016987
Sigma70_r4	Sigma-70, region 4	PF04545	IPR007630	GO:0003677 GO:0003700 GO:0006352 GO:0006355 GO:0016987
RNA_pol_Rpb2_7	RNA polymerase Rpb2, domain 7	PF04560	IPR007641	GO:0003677 GO:0003899 GO:0006350
RNA_pol_Rpb2_1	RNA polymerase beta subunit	PF04563	IPR007644	GO:0003677 GO:0003899 GO:0006350
RNA_pol_Rpb2_3	RNA polymerase Rpb2, domain 3	PF04565	IPR007645	GO:0003677 GO:0003899 GO:0006350
RNA_pol_Rpb2_5	RNA polymerase Rpb2, domain 5	PF04567	IPR007647	GO:0003677 GO:0003899 GO:0006350
RNA_pol_Rpb1_3	RNA polymerase Rpb1, domain 3	PF04983	IPR007066	GO:0003677 GO:0003899 GO:0006350
RNA_pol_Rpb1_1	RNA polymerase Rpb1, domain 1	PF04997	IPR007080	GO:0003677 GO:0003899 GO:0006350
RNA_pol_Rpb1_5	RNA polymerase Rpb1, domain 5	PF04998	IPR007081	GO:0003677 GO:0003899 GO:0006350
RNA_pol_Rpb1_4	RNA polymerase Rpb1, domain 4	PF05000	IPR007083	GO:0003677 GO:0003899 GO:0006350
TFIIB_Zn_Ribbon	TFIIB zinc-binding	PF08271	IPR013137	GO:0008270 GO:0045449
HSP70	Hsp70 protein	PF00012	IPR013126
RNA_pol_Rpb2_2	RNA polymerase Rpb2, domain 2	PF04561	IPR007642	GO:0003677 GO:0003899 GO:0006350
RNA_pol_Rpb2_4	RNA polymerase Rpb2, domain 4	PF04566	IPR007646	GO:0003677 GO:0003899 GO:0006350
Histone	Core histone H2A/H2B/H3/H4	PF00125	IPR007125	GO:0003677
Metallophos	Calcineurin-like phosphoesterase	PF00149	IPR004843	GO:0016787
Helicase_C	Helicase conserved C-terminal domain	PF00271	IPR001650	GO:0003676 GO:0004386 GO:0005524
NDK	Nucleoside diphosphate kinase	PF00334	IPR001564	GO:0004550 GO:0005524 GO:0006183 GO:0006228 GO:0006241
WD40	WD domain, G-beta repeat	PF00400	IPR019781
S1	S1 RNA binding domain	PF00575	IPR003029	GO:0003723
HHH	Helix-hairpin-helix motif	PF00633	IPR000445	GO:0003677
eIF-6	eIF-6 family	PF01912	IPR002769	GO:0042256 GO:0043022
RNA_POL_M_15KD	RNA polymerases M/15 Kd subunit	PF02150	IPR001529	GO:0003677 GO:0003899 GO:0006350
GATase	Glutamine amidotransferase class-I	PF00117	IPR000991	GO:0003824
SNF2_N	SNF2 family N-terminal domain	PF00176	IPR000330	GO:0003677 GO:0005524
LSM	LSM domain	PF01423	IPR001163