Pfam ID
Description
Accession
Interpro ID
GO ID
UQ_con
Ubiquitin-conjugating enzyme
PF00179
IPR000608
GO:0019787
GO:0043687
GO:0051246
UQ_con
forms interactions with
Pfam ID
Description
Accession
Interpro ID
GO ID
Notes
Source
zf-C3HC4
Zinc finger, C3HC4 type (RING finger)
PF00097
IPR018957
MHC_I
Class I Histocompatibility antigen, domains alpha 1 and 2
PF00129
IPR001039
GO:0006955
GO:0016020
GO:0019882
GO:0042612
UQ_con
Ubiquitin-conjugating enzyme
PF00179
IPR000608
GO:0019787
GO:0043687
GO:0051246
ubiquitin
Ubiquitin family
PF00240
IPR000626
UBA
UBA/TS-N domain
PF00627
IPR000449
HECT
HECT-domain (ubiquitin-transferase)
PF00632
IPR000569
GO:0005622
GO:0006464
GO:0016881
ThiF
ThiF family
PF00899
IPR000594
GO:0003824
Cbl_N2
CBL proto-oncogene N-terminus, EF hand-like domain
PF02761
IPR014741
GO:0004871
GO:0005634
GO:0007166
U-box
U-box domain
PF04564
IPR003613
GO:0000151
GO:0004842
GO:0016567
RanGAP1_C
RanGAP1 C-terminal domain
PF07834
IPR009109
GO:0005098
GO:0005515
GO:0007165
E2_bind
E2 binding domain
PF08825
IPR014929
GO:0005524
GO:0016881
GO:0045116
UBA_3
Fungal ubiquitin-associated domain
PF09288
IPR015368
UBA_e1_thiolCys
Ubiquitin-activating enzyme active site
PF10585
IPR019572
F-box
F-box domain
PF00646
IPR001810
UBACT
Repeat in ubiquitin-activating (UBA) protein
PF02134
IPR000127
GO:0005524
GO:0006464
GO:0008641
UCR_14kD
Ubiquinol-cytochrome C reductase complex 14kD subunit
PF02271
IPR003197
GO:0006122
GO:0008121
TFIIA
Transcription factor IIA, alpha/beta subunit
PF03153
IPR004855
GO:0003702
GO:0005672
GO:0006367
Histone
Core histone H2A/H2B/H3/H4
PF00125
IPR007125
GO:0003677
Helicase_C
Helicase conserved C-terminal domain
PF00271
IPR001650
GO:0003676
GO:0004386
GO:0005524
WD40
WD domain, G-beta repeat
PF00400
IPR019781
ADK
Adenylate kinase
PF00406
IPR000850
GO:0005524
GO:0006139
GO:0019205
Septin
Septin
PF00735
IPR000038
GO:0005525
GO:0007049
TCTP
Translationally controlled tumour protein
PF00838
IPR018105
Cullin
Cullin family
PF00888
IPR001373
GO:0006511
GO:0031461
GO:0031625
Exonuc_X-T
Exonuclease
PF00929
IPR013520
SAP
SAP domain
PF02037
IPR003034
GO:0003676
SOH1
SOH1
PF05669
IPR008831
GO:0016455
GO:0016592
GO:0045449
GTP_EFTU
Elongation factor Tu GTP binding domain
PF00009
IPR000795
GO:0003924
GO:0005525
HLH
Helix-loop-helix DNA-binding domain
PF00010
IPR001092
GO:0030528
GO:0045449
Pkinase
Protein kinase domain
PF00069
IPR017442
GO:0004672
GO:0005524
GO:0006468
Pyr_redox
Pyridine nucleotide-disulphide oxidoreductase
PF00070
IPR001327
GO:0016491
GO:0050660
GO:0055114
Response_reg
Response regulator receiver domain
PF00072
IPR001789
GO:0000156
GO:0000160
GO:0006355
Enolase_C
Enolase, C-terminal TIM barrel domain
PF00113
IPR020810
GO:0000015
GO:0000287
GO:0004634
GO:0006096
Hexapep
Bacterial transferase hexapeptide (three repeats)
PF00132
IPR001451
C2
C2 domain
PF00168
IPR000008
bZIP_1
bZIP transcription factor
PF00170
IPR011616
GO:0003700
GO:0006355
GO:0043565
GO:0046983
Zn_clus
Fungal Zn(2)-Cys(6) binuclear cluster domain
PF00172
IPR001138
GO:0003700
GO:0005634
GO:0006355
GO:0008270
Lyase_1
Lyase
PF00206
IPR022761
Ferritin
Ferritin-like domain
PF00210
IPR008331
GO:0006879
GO:0008199
Ribonuc_red_sm
Ribonucleotide reductase, small chain
PF00268
IPR000358
GO:0004748
GO:0009186
GO:0055114
DEAD
DEAD/DEAH box helicase
PF00270
IPR011545
GO:0003676
GO:0005524
GO:0008026
WW
WW domain
PF00397
IPR001202
GO:0005515
LIM
LIM domain
PF00412
IPR001781
GO:0008270
Prenyltrans
Prenyltransferase and squalene oxidase repeat
PF00432
IPR001330
GO:0003824
TPR_1
Tetratricopeptide repeat
PF00515
IPR001440
PDZ
PDZ domain (Also known as DHR or GLGF)
PF00595
IPR001478
GO:0005515
MAM
MAM domain
PF00629
IPR000998
GO:0016020
BIR
Inhibitor of Apoptosis domain
PF00653
IPR001370
GO:0005622
Peptidase_C14
Caspase domain
PF00656
IPR011600
GO:0004197
GO:0006508
P53
P53 DNA-binding domain
PF00870
IPR011615
GO:0003677
GO:0003700
GO:0005634
GO:0006355
Na_H_Exchanger
Sodium/hydrogen exchanger family
PF00999
IPR006153
GO:0006812
GO:0015299
GO:0016021
GO:0055085
TFIIS_C
Transcription factor S-II (TFIIS)
PF01096
IPR001222
GO:0003676
GO:0008270
GO:0030528
GO:0045449
EMP24_GP25L
emp24/gp25L/p24 family/GOLD
PF01105
IPR000348
GO:0006810
GO:0016021
Sec7
Sec7 domain
PF01369
IPR000904
GO:0005086
GO:0005622
GO:0032012
Skp1
Skp1 family, dimerisation domain
PF01466
IPR016072
GO:0006511
PPR
PPR repeat
PF01535
IPR002885
MMR_HSR1
GTPase of unknown function
PF01926
IPR002917
GO:0005525
GO:0005622
vATP-synt_E
ATP synthase (E/31 kDa) subunit
PF01991
IPR002842
GO:0015986
GO:0033178
GO:0046961
RNA_POL_M_15KD
RNA polymerases M/15 Kd subunit
PF02150
IPR001529
GO:0003677
GO:0003899
GO:0006350
RIIa
Regulatory subunit of type II PKA R-subunit
PF02197
IPR003117
GO:0007165
GO:0008603
SWIB
SWIB/MDM2 domain
PF02201
IPR003121
Cbl_N
CBL proto-oncogene N-terminal domain 1
PF02262
IPR003153
GO:0004871
GO:0005634
GO:0007166
CUE
CUE domain
PF02845
IPR003892
zf-MIZ
MIZ/SP-RING zinc finger
PF02891
IPR004181
GO:0008270
GTP_EFTU_D2
Elongation factor Tu domain 2
PF03144
IPR004161
GO:0005525
TFIID_30kDa
Transcription initiation factor TFIID 23-30kDa subunit
PF03540
IPR003923
GO:0003702
GO:0005634
GO:0006352
Tctex-1
Tctex-1 family
PF03645
IPR005334
Enolase_N
Enolase, N-terminal domain
PF03952
IPR020811
GO:0000015
GO:0000287
GO:0004634
GO:0006096
BRICHOS
BRICHOS domain
PF04089
IPR007084
DNA_pol_phi
DNA polymerase phi
PF04931
IPR007015
GO:0003677
GO:0003887
GO:0006350
RRS1
Ribosome biogenesis regulatory protein (RRS1)
PF04939
IPR007023
GO:0005634
GO:0042254
Nsp1_C
Nsp1-like C-terminal region
PF05064
IPR007758
GO:0005643
GO:0017056
Mt_ATP-synt_B
Mitochondrial ATP synthase B chain precursor (ATP-synt_B)
PF05405
IPR008688
GO:0000276
GO:0015078
GO:0015986
ATP_synt_H
ATP synthase subunit H
PF05493
IPR008389
GO:0015078
GO:0015991
GO:0033179
Rad51
Rad51
PF08423
IPR013632
Redoxin
Redoxin
PF08534
IPR013740
GO:0016491
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Copyright © 2007, Raghavachari et al.
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