Pfam ID Description Accession Interpro ID GO ID
Ribosomal_60s 60s Acidic ribosomal protein PF00428 IPR001813
GO:0003735
GO:0005622
GO:0005840
GO:0006414



Ribosomal_60s forms interactions with

Pfam ID Description Accession Interpro ID GO ID Notes Source
Ribosomal_60s 60s Acidic ribosomal protein PF00428 IPR001813
GO:0003735
GO:0005622
GO:0005840
GO:0006414
 PDB 3DID DPEA PE GPE DIPD RDFF INSITE DOMAINGA
Aldedh Aldehyde dehydrogenase family PF00171 IPR015590
GO:0008152
GO:0016491
GO:0055114
 HCP RCDP DPEA PE DIPD INSITE
Ribosomal_L11 Ribosomal protein L11, RNA binding domain PF00298 IPR020783
GO:0003735
GO:0005840
GO:0006412
 HCP RCDP GPE DIPD RDFF INSITE
TFIIB Transcription factor TFIIB repeat PF00382 IPR013150
GO:0003743
GO:0005515
GO:0006413
 HCP RCDP RDFF INSITE DIMA
Ribosomal_L10 Ribosomal protein L10 PF00466 IPR001790
GO:0005622
GO:0042254
 HCP RCDP FUSION DIPD DOMAINGA
Endonuclease_NS DNA/RNA non-specific endonuclease PF01223 IPR001604
GO:0003676
GO:0016787
GO:0046872
 HCP DPEA PE DIPD RDFF INSITE
eIF-6 eIF-6 family PF01912 IPR002769
GO:0042256
GO:0043022
 HCP RCDP DIPD DIMA
Ribosomal_L11_N Ribosomal protein L11, N-terminal domain PF03946 IPR020784
HCP GPE DIPD INSITE DOMAINGA
Actin Actin PF00022 IPR004000
GO:0005515
 MCP DPEA PE INSITE
Thioredoxin Thioredoxin PF00085 IPR013766
GO:0045454
 MCP PE INSITE
WD40 WD domain, G-beta repeat PF00400 IPR019781
MCP RDFF DOMAINGA
EF1_GNE EF-1 guanine nucleotide exchange domain PF00736 IPR014038
GO:0003746
GO:0005853
GO:0006414
 MCP DIMA
Ribosomal_L15e Ribosomal L15 PF00827 IPR000439
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 MCP DOMAINGA DIMA
Ribosomal_L39 Ribosomal L39 protein PF00832 IPR000077
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 MCP DOMAINGA DIMA
Ribosomal_L44 Ribosomal protein L44 PF00935 IPR000552
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 MCP DOMAINGA DIMA
Ribosomal_L31e Ribosomal protein L31e PF01198 IPR000054
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 MCP DOMAINGA DIMA
Ribosomal_L24e Ribosomal protein L24e PF01246 IPR000988
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 MCP DOMAINGA DIMA
Ribosomal_L35Ae Ribosomal protein L35Ae PF01247 IPR001780
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 MCP INSITE DOMAINGA
Ribosomal_L19e Ribosomal protein L19e PF01280 IPR000196
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 MCP DOMAINGA DIMA
Ribosomal_L32e Ribosomal protein L32 PF01655 IPR001515
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 MCP DOMAINGA DIMA
Ribosomal_L37ae Ribosomal L37ae protein family PF01780 IPR002674
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 MCP DOMAINGA DIMA
Ribosomal_L37e Ribosomal protein L37e PF01907 IPR001569
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 MCP DOMAINGA DIMA
PTH2 Peptidyl-tRNA hydrolase PTH2 PF01981 IPR002833
GO:0004045
GO:0006412
 MCP DPEA PE DIMA
Snf7 Snf7 PF03357 IPR005024
GO:0015031
 MCP DPEA PE INSITE
Pex2_Pex12 Pex2 / Pex12 amino terminal region PF04757 IPR006845
GO:0005778
GO:0007031
 MCP DIPD INSITE
Mgm101p Mitochondrial genome maintenance MGM101 PF06420 IPR009446
GO:0000002
GO:0000262
 MCP DPEA PE INSITE
EGF_CA Calcium binding EGF domain PF07645 IPR013091
MCP PE GPE
Redoxin Redoxin PF08534 IPR013740
GO:0016491
 MCP RCDP DIPD
HLH Helix-loop-helix DNA-binding domain PF00010 IPR001092
GO:0030528
GO:0045449
 LCP PE
Ldl_recept_a Low-density lipoprotein receptor domain class A PF00057
LCP DIPD
Ldl_recept_b Low-density lipoprotein receptor repeat class B PF00058 IPR000033
GO:0016020
 LCP DIPD
Lectin_C Lectin C-type domain PF00059 IPR001304
GO:0005488
 LCP DPEA PE
p450 Cytochrome P450 PF00067 IPR001128
GO:0004497
GO:0005506
GO:0009055
GO:0020037
 LCP PE
Serpin Serpin (serine protease inhibitor) PF00079 IPR000215
GO:0004867
 LCP DPEA PE
Sugar_tr Sugar (and other) transporter PF00083 IPR005828
GO:0005215
GO:0006810
GO:0016021
GO:0055085
 LCP RDFF
Cpn60_TCP1 TCP-1/cpn60 chaperonin family PF00118 IPR002423
GO:0005515
GO:0005524
GO:0044267
 LCP DPEA PE
Proteasome Proteasome A-type and B-type PF00227 IPR001353
GO:0004298
GO:0005839
GO:0051603
 LCP DIMA
Ribosomal_L22 Ribosomal protein L22p/L17e PF00237 IPR001063
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DOMAINGA
Ribosomal_L14 Ribosomal protein L14p/L23e PF00238 IPR000218
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DOMAINGA
ubiquitin Ubiquitin family PF00240 IPR000626
LCP DOMAINGA
14-3-3 14-3-3 protein PF00244 IPR000308
GO:0019904
 LCP DPEA PE
Ribosomal_L3 Ribosomal protein L3 PF00297 IPR000597
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DOMAINGA
Ribosomal_L30 Ribosomal protein L30p/L7e PF00327 IPR000517
GO:0003735
GO:0005840
GO:0006412
 LCP DOMAINGA
Ribosomal_L6 Ribosomal protein L6 PF00347 IPR020040
GO:0003735
GO:0005840
GO:0006412
GO:0019843
 LCP DOMAINGA
TBP Transcription factor TFIID (or TATA-binding protein, TBP) PF00352 IPR000814
GO:0003677
GO:0003702
GO:0006355
GO:0006367
 LCP DIMA
KOW KOW motif PF00467 IPR005824
LCP DOMAINGA
MCM MCM2/3/5 family PF00493 IPR001208
GO:0003677
GO:0005524
GO:0006260
 LCP DIMA
Ribosomal_L12 Ribosomal protein L7/L12 C-terminal domain PF00542 IPR013823
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP FUSION
Ribosomal_L13 Ribosomal protein L13 PF00572 IPR005822
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DOMAINGA
Ribosomal_L4 Ribosomal protein L4/L1 family PF00573 IPR002136
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DOMAINGA
Ribosomal_L5_C ribosomal L5P family C-terminus PF00673 IPR020928
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DOMAINGA
Ribosomal_L1 Ribosomal protein L1p/L10e family PF00687 IPR002143
GO:0003723
GO:0006396
 LCP DOMAINGA
XPG_N XPG N-terminal domain PF00752 IPR006085
GO:0004518
GO:0006281
 LCP DIMA
Ribosomal_L18e Eukaryotic ribosomal protein L18 PF00828 IPR021131
LCP DOMAINGA
Ribosomal_L29 Ribosomal L29 protein PF00831 IPR001854
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DOMAINGA
XPG_I XPG I-region PF00867 IPR006086
GO:0004518
GO:0006281
 LCP DIMA
Peptidase_M17 Cytosol aminopeptidase family, catalytic domain PF00883 IPR000819
GO:0004177
GO:0005622
GO:0006508
 LCP DPEA PE
Ribosomal_S4e Ribosomal family S4e PF00900 IPR013845
LCP DIMA
Ribosomal_S3Ae Ribosomal S3Ae family PF01015 IPR001593
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
Ribosomal_S19e Ribosomal protein S19e PF01090 IPR001266
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
Ribosomal_S6e Ribosomal protein S6e PF01092 IPR001377
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
TFIIS_C Transcription factor S-II (TFIIS) PF01096 IPR001222
GO:0003676
GO:0008270
GO:0030528
GO:0045449
 LCP DIMA
F_actin_cap_B F-actin capping protein, beta subunit PF01115 IPR001698
GO:0003779
GO:0005737
GO:0008290
GO:0030036
 LCP DPEA PE
Ribosomal_L21e Ribosomal protein L21e PF01157 IPR001147
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
Ribosomal_L6e Ribosomal protein L6e PF01159 IPR000915
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DOMAINGA
ATP_bind_3 PP-loop family PF01171 IPR011063
LCP DIMA
SBDS Shwachman-Bodian-Diamond syndrome (SBDS) protein PF01172 IPR019783
LCP DIMA
eIF-1a Translation initiation factor 1A / IF-1 PF01176 IPR006196
GO:0003723
GO:0003743
GO:0006413
 LCP DIMA
RNA_pol_Rpb5_C RNA polymerase Rpb5, C-terminal domain PF01191 IPR000783
GO:0003677
GO:0003899
GO:0006350
 LCP DIMA
RNA_pol_L RNA polymerase Rpb3/Rpb11 dimerisation domain PF01193 IPR011261
GO:0003899
GO:0006350
GO:0046983
 LCP DIMA
RNA_pol_N RNA polymerases N / 8 kDa subunit PF01194 IPR000268
GO:0003677
GO:0003899
GO:0006351
 LCP DIMA
Ribosomal_L34e Ribosomal protein L34e PF01199 IPR008195
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DOMAINGA
Ribosomal_S28e Ribosomal protein S28e PF01200 IPR000289
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
Ribosomal_S8e Ribosomal protein S8e PF01201 IPR022309
LCP DIMA
Ribosomal_L7Ae Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PF01248 IPR004038
LCP DOMAINGA
Fibrillarin Fibrillarin PF01269 IPR000692
GO:0003723
GO:0006364
GO:0008033
GO:0008168
 LCP DIMA
Ribosomal_S24e Ribosomal protein S24e PF01282 IPR001976
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
eIF-5a Eukaryotic initiation factor 5A hypusine, DNA-binding OB fold PF01287 IPR020189
GO:0003723
GO:0003746
GO:0006452
GO:0043022
GO:0045901
GO:0045905
 LCP RCDP
Ribosomal_L13e Ribosomal protein L13e PF01294 IPR001380
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DOMAINGA
Ribosomal_L15 Ribosomal protein L15 amino terminal region PF01305
LCP DOMAINGA
LSM LSM domain PF01423 IPR001163
LCP DIMA
Ribosomal_S27 Ribosomal protein S27a PF01599 IPR002906
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
Ribosomal_S27e Ribosomal protein S27 PF01667 IPR000592
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
Ribosomal_L18ae Ribosomal L18ae protein family PF01775 IPR021138
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DOMAINGA
Ribosomal_L27e Ribosomal L27e protein family PF01777 IPR001141
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DOMAINGA
Ribosomal_L38e Ribosomal L38e protein family PF01781 IPR002675
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DOMAINGA
Nop Putative snoRNA binding domain PF01798 IPR002687
LCP DIMA
DUF46 Putative integral membrane protein DUF46 PF01864 IPR002726
LCP DIMA
Diphthamide_syn Putative diphthamide synthesis protein PF01866 IPR002728
LCP DIMA
Hjc Archaeal holliday junction resolvase (hjc) PF01870 IPR002732
LCP DIMA
AMMECR1 AMMECR1 PF01871 IPR002733
LCP DIMA
eIF-5_eIF-2B Domain found in IF2B/IF5 PF01873 IPR002735
GO:0003743
GO:0006413
 LCP DIMA
Memo Memo-like protein PF01875 IPR002737
LCP DIMA
DUF54 Protein of unknown function DUF54 PF01877 IPR002739
LCP DIMA
DNA_primase_S Eukaryotic and archaeal DNA primase small subunit PF01896 IPR002755
GO:0003896
GO:0006269
 LCP DIMA
ATP_bind_4 ATP-binding region PF01902 IPR002761
LCP DIMA
DS Deoxyhypusine synthase PF01916 IPR002773
GO:0008612
 LCP DIMA
Prefoldin_2 Prefoldin subunit PF01920 IPR002777
GO:0006457
GO:0016272
GO:0051082
 LCP DIMA
SRP19 SRP19 protein PF01922 IPR002778
GO:0006614
GO:0008312
GO:0048500
 LCP DIMA
Ribosomal_L14e Ribosomal protein L14 PF01929 IPR002784
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DOMAINGA
Thi4 Thi4 family PF01946
LCP DIMA
tRNA_int_endo tRNA intron endonuclease, catalytic C-terminal domain PF01974 IPR006677
GO:0000213
GO:0006388
 LCP DIMA
CTP-dep_RFKase Domain of unknown function DUF120 PF01982 IPR002834
GO:0000166
GO:0000287
GO:0008531
GO:0009398
 LCP DIMA
dsDNA_bind Double-stranded DNA-binding domain PF01984 IPR002836
GO:0003677
 LCP DIMA
TFIIE_alpha TFIIE alpha subunit PF02002
LCP DIMA
TRM N2,N2-dimethylguanosine tRNA methyltransferase PF02005 IPR002905
GO:0003723
GO:0004809
GO:0008033
 LCP DIMA
DUF137 Protein of unknown function DUF137 PF02006 IPR002855
LCP DIMA
RNA_POL_M_15KD RNA polymerases M/15 Kd subunit PF02150 IPR001529
GO:0003677
GO:0003899
GO:0006350
 LCP DIMA
COX5A Cytochrome c oxidase subunit Va PF02284 IPR003204
GO:0004129
 LCP DPEA PE
CDC48_N Cell division protein 48 (CDC48), N-terminal domain PF02359 IPR003338
GO:0005524
 LCP DIMA
Met_10 Met-10+ like-protein PF02475 IPR003402
LCP DIMA
DUF171 Uncharacterized ACR, COG2106 PF02598 IPR003750
LCP DIMA
TYW3 Methyltransferase TYW3 PF02676 IPR003827
LCP DIMA
ERCC4 ERCC4 domain PF02732 IPR006166
GO:0003677
GO:0004518
GO:0005515
GO:0006259
 LCP DIMA
CDC48_2 Cell division protein 48 (CDC48), domain 2 PF02933 IPR004201
GO:0005524
 LCP DIMA
Prefoldin Prefoldin subunit PF02996 IPR004127
GO:0006457
GO:0016272
GO:0051082
 LCP DIMA
ATP_bind_1 Conserved hypothetical ATP binding protein PF03029 IPR004130
GO:0000166
 LCP DIMA
zf-ZPR1 ZPR1 zinc-finger domain PF03367 IPR004457
GO:0005515
GO:0008270
 LCP DIMA
eRF1_1 eRF1 domain 1 PF03463 IPR005140
LCP DIMA
eRF1_2 eRF1 domain 2 PF03464 IPR005141
LCP DIMA
eRF1_3 eRF1 domain 3 PF03465 IPR005142
LCP DIMA
EMG1 EMG1/NEP1 methyltransferase PF03587 IPR005304
LCP DIMA
Ribosomal_L23eN Ribosomal protein L23, N-terminal domain PF03939 IPR005633
LCP DOMAINGA
Ribosomal_L2_C Ribosomal Proteins L2, C-terminal domain PF03947 IPR022669
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DOMAINGA
PWP2 Periodic tryptophan protein 2 WD repeat associated presumed domain PF04047
LCP DIPD
Rad52_Rad22 Rad52/22 family double-strand break repair protein PF04098 IPR007232
GO:0006281
GO:0006310
 LCP INSITE
SPC12 Microsomal signal peptidase 12 kDa subunit (SPC12) PF06645 IPR009542
GO:0005787
GO:0006465
GO:0008233
GO:0016021
 LCP INSITE
Ribosomal_L30_N Ribosomal L30 N-terminal domain PF08079 IPR012988
LCP DOMAINGA
TFIIB_Zn_Ribbon TFIIB zinc-binding PF08271 IPR013137
GO:0008270
GO:0045449
 LCP INSITE
DUF1753 Golgi protein of unknown function (DUF1753) PF08552 IPR013862
LCP INSITE
Rep_fac-A_3 Replication factor A protein 3 PF08661 IPR013970
LCP INSITE
Fcf2 Fcf2 pre-rRNA processing PF08698 IPR014810
LCP INSITE



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