Pfam ID |
Description |
Accession |
Interpro ID |
GO ID |
Notes |
Source |
Cpn60_TCP1 |
TCP-1/cpn60 chaperonin family |
PF00118 |
IPR002423 |
|
 |
|
Cpn10 |
Chaperonin 10 Kd subunit |
PF00166 |
IPR020818 |
|
 |
|
Proteasome |
Proteasome A-type and B-type |
PF00227 |
IPR001353 |
|
 |
|
PP2C |
Protein phosphatase 2C |
PF00481 |
IPR014045 |
|
 |
|
IBB |
Importin beta binding domain |
PF01749 |
IPR002652 |
|
 |
|
dsrm |
Double-stranded RNA binding motif |
PF00035 |
IPR001159 |
|
 |
|
Ras |
Ras family |
PF00071 |
IPR013753 |
|
 |
|
ketoacyl-synt |
Beta-ketoacyl synthase, N-terminal domain |
PF00109 |
IPR014030 |
|
 |
|
TIM |
Triosephosphate isomerase |
PF00121 |
IPR000652 |
|
 |
|
Sigma70_r1_2 |
Sigma-70 factor, region 1.2 |
PF00140 |
IPR009042 |
|
 |
|
Ribosomal_S4 |
Ribosomal protein S4/S9 N-terminal domain |
PF00163 |
IPR001912 |
|
 |
|
Bac_DNA_binding |
Bacterial DNA-binding protein |
PF00216 |
IPR000119 |
|
 |
|
Ribosomal_L16 |
Ribosomal protein L16p/L10e |
PF00252 |
IPR016180 |
|
 |
|
Bac_DnaA |
Bacterial dnaA protein |
PF00308 |
IPR013317 |
|
 |
|
Ribosomal_S3_N |
Ribosomal protein S3, N-terminal domain |
PF00417 |
IPR008282 |
|
 |
|
SSB |
Single-strand binding protein family |
PF00436 |
IPR000424 |
|
 |
|
Ribosomal_L20 |
Ribosomal protein L20 |
PF00453 |
IPR005813 |
|
 |
|
Ribosomal_L34 |
Ribosomal protein L34 |
PF00468 |
IPR000271 |
|
 |
|
RF-1 |
RF-1 domain |
PF00472 |
IPR000352 |
|
 |
|
DNA_pol_A |
DNA polymerase family A |
PF00476 |
IPR001098 |
|
 |
|
MutS_V |
MutS domain V |
PF00488 |
IPR000432 |
|
 |
|
Arm |
Armadillo/beta-catenin-like repeat |
PF00514 |
IPR000225 |
|
 |
|
BRCT |
BRCA1 C Terminus (BRCT) domain |
PF00533 |
IPR001357 |
|
 |
|
Ribosomal_L12 |
Ribosomal protein L7/L12 C-terminal domain |
PF00542 |
IPR013823 |
|
 |
|
PP-binding |
Phosphopantetheine attachment site |
PF00550 |
IPR006163 |
|
 |
|
CLP_protease |
Clp protease |
PF00574 |
IPR001907 |
|
 |
|
Ribonuclease_3 |
RNase3 domain |
PF00636 |
IPR000999 |
|
 |
|
Ran_BP1 |
RanBP1 domain |
PF00638 |
IPR000156 |
|
 |
|
Acyl_transf_1 |
Acyl transferase domain |
PF00698 |
IPR014043 |
|
 |
|
IF3_C |
Translation initiation factor IF-3, C-terminal domain |
PF00707 |
IPR019815 |
|
 |
|
DNA_pol3_beta |
DNA polymerase III beta subunit, N-terminal domain |
PF00712 |
IPR022634 |
|
 |
|
DnaB |
DnaB-like helicase N terminal domain |
PF00772 |
IPR007693 |
|
 |
|
Ribosomal_L21p |
Ribosomal prokaryotic L21 protein |
PF00829 |
IPR001787 |
|
 |
|
Ribosomal_L28 |
Ribosomal L28 family |
PF00830 |
IPR001383 |
|
 |
|
PseudoU_synth_2 |
RNA pseudouridylate synthase |
PF00849 |
IPR006145 |
|
 |
|
Ribosomal_S16 |
Ribosomal protein S16 |
PF00886 |
IPR000307 |
|
 |
|
EF_TS |
Elongation factor TS |
PF00889 |
IPR014039 |
|
 |
|
Transpeptidase |
Penicillin binding protein transpeptidase domain |
PF00905 |
IPR001460 |
|
 |
|
Transgly |
Transglycosylase |
PF00912 |
IPR001264 |
|
 |
|
RNA_pol_A_bac |
RNA polymerase Rpb3/RpoA insert domain |
PF01000 |
IPR011262 |
|
 |
|
Ribosomal_L27 |
Ribosomal L27 protein |
PF01016 |
IPR001684 |
|
 |
|
NusB |
NusB family |
PF01029 |
IPR006027 |
|
 |
|
Ribosomal_S18 |
Ribosomal protein S18 |
PF01084 |
IPR001648 |
|
 |
|
FTSW_RODA_SPOVE |
Cell cycle protein |
PF01098 |
IPR001182 |
|
 |
|
DNA_mis_repair |
DNA mismatch repair protein, C-terminal domain |
PF01119 |
IPR013507 |
|
 |
|
CoaE |
Dephospho-CoA kinase |
PF01121 |
IPR001977 |
|
 |
|
EFP |
Elongation factor P (EF-P) OB domain |
PF01132 |
IPR001059 |
|
 |
|
GIDA |
Glucose inhibited division protein A |
PF01134 |
IPR002218 |
|
 |
|
CTP_transf_1 |
Cytidylyltransferase family |
PF01148 |
IPR000374 |
|
 |
|
Pept_tRNA_hydro |
Peptidyl-tRNA hydrolase |
PF01195 |
IPR001328 |
|
 |
|
Ribosomal_L17 |
Ribosomal protein L17 |
PF01196 |
IPR000456 |
|
 |
|
SKI |
Shikimate kinase |
PF01202 |
IPR000623 |
|
 |
|
Dus |
Dihydrouridine synthase (Dus) |
PF01207 |
IPR001269 |
|
 |
|
Mur_ligase |
Mur ligase family, catalytic domain |
PF01225 |
IPR000713 |
|
 |
|
Ribosomal_L19 |
Ribosomal protein L19 |
PF01245 |
IPR001857 |
|
 |
|
Peptidase_A8 |
Signal peptidase (SPase) II |
PF01252 |
IPR001872 |
|
 |
|
Ribosomal_L9_N |
Ribosomal protein L9, N-terminal domain |
PF01281 |
IPR020070 |
|
 |
|
Ribosomal_L15 |
Ribosomal protein L15 amino terminal region |
PF01305 |
|
|
 |
|
Pep_deformylase |
Polypeptide deformylase |
PF01327 |
IPR000181 |
|
 |
|
5_3_exonuc |
5'-3' exonuclease, C-terminal SAM fold |
PF01367 |
IPR020047 |
|
 |
|
Peptidase_M41 |
Peptidase family M41 |
PF01434 |
IPR000642 |
|
 |
|
LysM |
LysM domain |
PF01476 |
IPR018392 |
|
 |
|
Acyltransferase |
Acyltransferase |
PF01553 |
IPR002123 |
|
 |
|
Ribosomal_L35p |
Ribosomal protein L35 |
PF01632 |
IPR021137 |
|
 |
|
DNA_ligase_aden |
NAD-dependent DNA ligase adenylation domain |
PF01653 |
IPR013839 |
|
 |
|
DUF28 |
Domain of unknown function DUF28 |
PF01709 |
IPR002876 |
|
 |
|
IPPT |
IPP transferase |
PF01715 |
IPR002627 |
|
 |
|
PolyA_pol |
Poly A polymerase head domain |
PF01743 |
IPR002646 |
|
 |
|
tRNA_m1G_MT |
tRNA (Guanine-1)-methyltransferase |
PF01746 |
IPR016009 |
|
 |
|
RRF |
Ribosome recycling factor |
PF01765 |
IPR002661 |
|
 |
|
RimM |
RimM N-terminal domain |
PF01782 |
IPR002676 |
|
 |
|
LGT |
Prolipoprotein diacylglyceryl transferase |
PF01790 |
IPR001640 |
|
 |
|
Methyltransf_5 |
MraW methylase family |
PF01795 |
IPR002903 |
|
 |
|
zf-CHC2 |
CHC2 zinc finger |
PF01807 |
IPR002694 |
|
 |
|
60KD_IMP |
60Kd inner membrane protein |
PF02096 |
IPR001708 |
|
 |
|
NusG |
Transcription termination factor nusG |
PF02357 |
IPR006645 |
|
 |
|
UPF0079 |
Uncharacterised P-loop hydrolase UPF0079 |
PF02367 |
IPR003442 |
|
 |
|
Methyltransf_4 |
Putative methyltransferase |
PF02390 |
IPR003358 |
|
 |
|
DUF143 |
Domain of unknown function DUF143 |
PF02410 |
IPR004394 |
|
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5_3_exonuc_N |
5'-3' exonuclease, N-terminal resolvase-like domain |
PF02739 |
IPR020046 |
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DNA_pol3_beta_2 |
DNA polymerase III beta subunit, central domain |
PF02767 |
IPR022637 |
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DNA_pol3_beta_3 |
DNA polymerase III beta subunit, C-terminal domain |
PF02768 |
IPR022635 |
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Ketoacyl-synt_C |
Beta-ketoacyl synthase, C-terminal domain |
PF02801 |
IPR014031 |
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MurB_C |
UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain |
PF02873 |
IPR011601 |
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Formyl_trans_C |
Formyl transferase, C-terminal domain |
PF02911 |
IPR005793 |
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Phe_tRNA-synt_N |
Aminoacyl tRNA synthetase class II, N-terminal domain |
PF02912 |
IPR004188 |
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Glyco_transf_28 |
Glycosyltransferase family 28 N-terminal domain |
PF03033 |
IPR004276 |
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tRNA_Me_trans |
tRNA methyl transferase |
PF03054 |
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DNA_ligase_OB |
NAD-dependent DNA ligase OB-fold domain |
PF03120 |
IPR004150 |
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FDX-ACB |
Ferredoxin-fold anticodon binding domain |
PF03147 |
IPR005121 |
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TRCF |
TRCF domain |
PF03461 |
IPR005118 |
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PCRF |
PCRF domain |
PF03462 |
IPR005139 |
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CorC_HlyC |
Transporter associated domain |
PF03471 |
IPR005170 |
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Cons_hypoth95 |
Conserved hypothetical protein 95 |
PF03602 |
IPR004398 |
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PBP_dimer |
Penicillin-binding Protein dimerisation domain |
PF03717 |
IPR005311 |
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DnaB_C |
DnaB-like helicase C terminal domain |
PF03796 |
IPR007694 |
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SecG |
Preprotein translocase SecG subunit |
PF03840 |
IPR004692 |
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Rad21_Rec8_N |
N terminus of Rad21 / Rec8 like protein |
PF04825 |
IPR006910 |
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Miro |
Miro-like protein |
PF08477 |
IPR013684 |
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