Pfam ID Description Accession Interpro ID GO ID
Ribosomal_S4 Ribosomal protein S4/S9 N-terminal domain PF00163 IPR001912
GO:0005622
GO:0019843



Ribosomal_S4 forms interactions with

Pfam ID Description Accession Interpro ID GO ID Notes Source
Ribosomal_S3_C Ribosomal protein S3, C-terminal domain PF00189 IPR001351
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 PDB IPFAM 3DID
Ribosomal_S5 Ribosomal protein S5, N-terminal domain PF00333 IPR013810
GO:0003723
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 PDB IPFAM
S4 S4 domain PF01479 IPR002942
GO:0003723
 PDB IPFAM 3DID ME
Ribosomal_S5_C Ribosomal protein S5, C-terminal domain PF03719 IPR005324
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 PDB IPFAM 3DID
Ribosomal_S2 Ribosomal protein S2 PF00318 IPR001865
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 MCP INSITE DOMAINGA
WD40 WD domain, G-beta repeat PF00400 IPR019781
MCP RDFF DOMAINGA
Bystin Bystin PF05291 IPR007955
MCP RCDP DIPD
dsrm Double-stranded RNA binding motif PF00035 IPR001159
GO:0003725
GO:0005622
 LCP DIMA
ketoacyl-synt Beta-ketoacyl synthase, N-terminal domain PF00109 IPR014030
LCP DIMA
TIM Triosephosphate isomerase PF00121 IPR000652
GO:0004807
GO:0008152
 LCP DIMA
Sigma70_r1_2 Sigma-70 factor, region 1.2 PF00140 IPR009042
GO:0003677
GO:0003700
GO:0006352
GO:0006355
GO:0016987
 LCP DIMA
RecA recA bacterial DNA recombination protein PF00154 IPR013765
GO:0003697
GO:0005524
GO:0006281
 LCP DIMA
Cpn10 Chaperonin 10 Kd subunit PF00166 IPR020818
GO:0005737
GO:0006457
 LCP DIMA
Bac_DNA_binding Bacterial DNA-binding protein PF00216 IPR000119
GO:0003677
 LCP DIMA
Ribosomal_L16 Ribosomal protein L16p/L10e PF00252 IPR016180
GO:0003735
GO:0005840
GO:0006412
 LCP DIMA
Bac_DnaA Bacterial dnaA protein PF00308 IPR013317
LCP DIMA
Ribosomal_S3_N Ribosomal protein S3, N-terminal domain PF00417 IPR008282
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
SSB Single-strand binding protein family PF00436 IPR000424
GO:0003697
 LCP DIMA
Ribosomal_L20 Ribosomal protein L20 PF00453 IPR005813
GO:0003735
GO:0005622
GO:0005840
GO:0006412
GO:0019843
 LCP DIMA
Ribosomal_L34 Ribosomal protein L34 PF00468 IPR000271
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
Ribosomal_L33 Ribosomal protein L33 PF00471 IPR001705
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
RF-1 RF-1 domain PF00472 IPR000352
GO:0003747
GO:0006415
 LCP DIMA
DNA_pol_A DNA polymerase family A PF00476 IPR001098
GO:0003677
GO:0003887
GO:0006260
 LCP DIMA
MutS_V MutS domain V PF00488 IPR000432
GO:0005524
GO:0006298
GO:0030983
 LCP DIMA
BRCT BRCA1 C Terminus (BRCT) domain PF00533 IPR001357
GO:0005622
 LCP DIMA
Ribosomal_L12 Ribosomal protein L7/L12 C-terminal domain PF00542 IPR013823
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
PP-binding Phosphopantetheine attachment site PF00550 IPR006163
GO:0048037
 LCP DIMA
CLP_protease Clp protease PF00574 IPR001907
GO:0004252
GO:0006508
 LCP DIMA
Ribonuclease_3 RNase3 domain PF00636 IPR000999
GO:0003723
GO:0004525
GO:0006396
 LCP DIMA
IF3_C Translation initiation factor IF-3, C-terminal domain PF00707 IPR019815
GO:0003743
GO:0006413
 LCP DIMA
DNA_pol3_beta DNA polymerase III beta subunit, N-terminal domain PF00712 IPR022634
GO:0003677
GO:0003887
GO:0006260
GO:0008408
GO:0009360
 LCP DIMA
DnaB DnaB-like helicase N terminal domain PF00772 IPR007693
GO:0003678
GO:0005524
GO:0006260
 LCP DIMA
Ribosomal_L21p Ribosomal prokaryotic L21 protein PF00829 IPR001787
GO:0003723
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
Ribosomal_L28 Ribosomal L28 family PF00830 IPR001383
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
Ribosomal_S17e Ribosomal S17 PF00833 IPR001210
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DOMAINGA
PseudoU_synth_2 RNA pseudouridylate synthase PF00849 IPR006145
GO:0001522
GO:0003723
GO:0009451
GO:0009982
 LCP DIMA
Ribosomal_S16 Ribosomal protein S16 PF00886 IPR000307
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
EF_TS Elongation factor TS PF00889 IPR014039
GO:0003746
GO:0005622
GO:0006414
 LCP DIMA
Transpeptidase Penicillin binding protein transpeptidase domain PF00905 IPR001460
GO:0008658
GO:0009273
 LCP DIMA
RNA_pol_A_bac RNA polymerase Rpb3/RpoA insert domain PF01000 IPR011262
GO:0003899
GO:0006350
GO:0046983
 LCP DIMA
Ribosomal_L27 Ribosomal L27 protein PF01016 IPR001684
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
SecA_PP_bind SecA preprotein cross-linking domain PF01043 IPR011130
GO:0005515
GO:0016020
GO:0017038
 LCP DIMA
Ribosomal_S18 Ribosomal protein S18 PF01084 IPR001648
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
Ribosomal_S19e Ribosomal protein S19e PF01090 IPR001266
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DOMAINGA
Ribosomal_S6e Ribosomal protein S6e PF01092 IPR001377
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DOMAINGA
FTSW_RODA_SPOVE Cell cycle protein PF01098 IPR001182
GO:0007049
GO:0016021
 LCP DIMA
CoaE Dephospho-CoA kinase PF01121 IPR001977
GO:0004140
GO:0005524
GO:0015937
 LCP DIMA
EFP Elongation factor P (EF-P) OB domain PF01132 IPR001059
GO:0003746
GO:0006414
 LCP DIMA
GIDA Glucose inhibited division protein A PF01134 IPR002218
GO:0008033
GO:0050660
 LCP DIMA
CTP_transf_1 Cytidylyltransferase family PF01148 IPR000374
GO:0016020
GO:0016772
 LCP DIMA
Pept_tRNA_hydro Peptidyl-tRNA hydrolase PF01195 IPR001328
GO:0004045
GO:0006412
 LCP DIMA
Ribosomal_L17 Ribosomal protein L17 PF01196 IPR000456
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
Dus Dihydrouridine synthase (Dus) PF01207 IPR001269
GO:0008033
GO:0017150
GO:0050660
GO:0055114
 LCP DIMA
Ribosomal_L19 Ribosomal protein L19 PF01245 IPR001857
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
Ribosomal_S6 Ribosomal protein S6 PF01250 IPR000529
GO:0003735
GO:0005840
GO:0006412
GO:0019843
 LCP DIMA
Peptidase_A8 Signal peptidase (SPase) II PF01252 IPR001872
GO:0004190
GO:0006508
GO:0016020
 LCP DIMA
Ribosomal_L9_N Ribosomal protein L9, N-terminal domain PF01281 IPR020070
LCP DIMA
Ribosomal_S26e Ribosomal protein S26e PF01283 IPR000892
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DOMAINGA
Ribosomal_L15 Ribosomal protein L15 amino terminal region PF01305
LCP DIMA
Pep_deformylase Polypeptide deformylase PF01327 IPR000181
GO:0005506
GO:0006412
GO:0042586
 LCP DIMA
5_3_exonuc 5'-3' exonuclease, C-terminal SAM fold PF01367 IPR020047
GO:0003677
GO:0008409
 LCP DIMA
Peptidase_M41 Peptidase family M41 PF01434 IPR000642
GO:0004222
GO:0005524
GO:0006508
 LCP DIMA
LysM LysM domain PF01476 IPR018392
GO:0016998
 LCP DIMA
Acyltransferase Acyltransferase PF01553 IPR002123
GO:0008152
GO:0008415
 LCP DIMA
DUF21 Domain of unknown function DUF21 PF01595 IPR002550
LCP DIMA
Ribosomal_L35p Ribosomal protein L35 PF01632 IPR021137
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
ACPS 4'-phosphopantetheinyl transferase superfamily PF01648 IPR008278
GO:0000287
GO:0008897
GO:0009059
 LCP DIMA
Ribosomal_S20p Ribosomal protein S20 PF01649 IPR002583
GO:0003723
GO:0003735
GO:0005622
GO:0005840
GO:0006412
 LCP DIMA
IF4E Eukaryotic initiation factor 4E PF01652 IPR001040
GO:0003723
GO:0003743
GO:0005737
GO:0006413
 LCP INSITE
DNA_ligase_aden NAD-dependent DNA ligase adenylation domain PF01653 IPR013839
GO:0003911
 LCP DIMA
SmpB SmpB protein PF01668 IPR000037
GO:0003723
GO:0006412
 LCP DIMA
Flavokinase Riboflavin kinase PF01687 IPR015865
GO:0008531
GO:0009231
 LCP DIMA
DUF28 Domain of unknown function DUF28 PF01709 IPR002876
LCP DIMA
IPPT IPP transferase PF01715 IPR002627
GO:0004811
GO:0005524
GO:0008033
 LCP DIMA
PolyA_pol Poly A polymerase head domain PF01743 IPR002646
GO:0003723
GO:0006396
GO:0016779
 LCP DIMA
tRNA_m1G_MT tRNA (Guanine-1)-methyltransferase PF01746 IPR016009
LCP DIMA
RRF Ribosome recycling factor PF01765 IPR002661
GO:0006412
 LCP DIMA
LGT Prolipoprotein diacylglyceryl transferase PF01790 IPR001640
GO:0009249
GO:0016020
GO:0016757
GO:0042158
 LCP DIMA
Methyltransf_5 MraW methylase family PF01795 IPR002903
GO:0008168
 LCP DIMA
zf-CHC2 CHC2 zinc finger PF01807 IPR002694
GO:0003677
GO:0003896
GO:0006260
GO:0008270
 LCP DIMA
60KD_IMP 60Kd inner membrane protein PF02096 IPR001708
GO:0016021
GO:0051205
 LCP DIMA
NusG Transcription termination factor nusG PF02357 IPR006645
GO:0003711
GO:0032968
 LCP DIMA
Methyltransf_4 Putative methyltransferase PF02390 IPR003358
GO:0006400
GO:0008176
 LCP DIMA
DUF149 Uncharacterised BCR, YbaB family COG0718 PF02575 IPR004401
LCP DIMA
5_3_exonuc_N 5'-3' exonuclease, N-terminal resolvase-like domain PF02739 IPR020046
GO:0003677
GO:0008409
 LCP DIMA
DNA_pol3_beta_3 DNA polymerase III beta subunit, C-terminal domain PF02768 IPR022635
GO:0003677
GO:0003887
GO:0006260
GO:0008408
GO:0009360
 LCP DIMA
S-AdoMet_synt_M S-adenosylmethionine synthetase, central domain PF02772 IPR022629
LCP DIMA
S-AdoMet_synt_C S-adenosylmethionine synthetase, C-terminal domain PF02773 IPR022630
LCP DIMA
Ketoacyl-synt_C Beta-ketoacyl synthase, C-terminal domain PF02801 IPR014031
LCP DIMA
MurB_C UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain PF02873 IPR011601
GO:0008762
GO:0009252
GO:0055114
 LCP DIMA
Formyl_trans_C Formyl transferase, C-terminal domain PF02911 IPR005793
GO:0009058
GO:0016742
 LCP DIMA
Glyco_transf_28 Glycosyltransferase family 28 N-terminal domain PF03033 IPR004276
GO:0005975
GO:0016758
GO:0030259
 LCP DIMA
tRNA_Me_trans tRNA methyl transferase PF03054
GO:0005737
GO:0008033
GO:0016740
 LCP DIMA
RNA_pol_A_CTD Bacterial RNA polymerase, alpha chain C terminal domain PF03118 IPR011260
GO:0003677
GO:0003899
GO:0006350
 LCP DIMA
DNA_ligase_OB NAD-dependent DNA ligase OB-fold domain PF03120 IPR004150
GO:0003911
GO:0006260
GO:0006281
 LCP DIMA
FDX-ACB Ferredoxin-fold anticodon binding domain PF03147 IPR005121
GO:0000049
GO:0000287
GO:0004826
GO:0005524
GO:0006432
GO:0008033
 LCP DIMA
PCRF PCRF domain PF03462 IPR005139
GO:0005737
GO:0006415
GO:0016149
 LCP DIMA
S10_plectin Plectin/S10 domain PF03501 IPR005326
LCP DOMAINGA
UPF0081 Uncharacterised protein family (UPF0081) PF03652 IPR005227
GO:0005737
GO:0006281
GO:0006310
GO:0006974
GO:0016788
 LCP DIMA
Competence Competence protein PF03772 IPR004477
LCP DIMA
DnaB_C DnaB-like helicase C terminal domain PF03796 IPR007694
GO:0003678
GO:0005524
GO:0006260
 LCP DIMA
Mpp10 Mpp10 protein PF04006 IPR007151
LCP INSITE
PWP2 Periodic tryptophan protein 2 WD repeat associated presumed domain PF04047
LCP DIPD
SPC12 Microsomal signal peptidase 12 kDa subunit (SPC12) PF06645 IPR009542
GO:0005787
GO:0006465
GO:0008233
GO:0016021
 LCP INSITE
U3_snoRNA_assoc U3 snoRNA associated PF08297 IPR013268
LCP INSITE



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