Pfam ID
Description
Accession
Interpro ID
GO ID
rve
Integrase core domain
PF00665
IPR001584
GO:0003677
GO:0015074
rve
forms interactions with
Pfam ID
Description
Accession
Interpro ID
GO ID
Notes
Source
Integrase
Integrase DNA binding domain
PF00552
IPR001037
GO:0003676
GO:0008907
rve
Integrase core domain
PF00665
IPR001584
GO:0003677
GO:0015074
Integrase_Zn
Integrase Zinc binding domain
PF02022
IPR003308
GO:0003677
GO:0008270
GO:0008907
GO:0015074
RnaseH
RNase H
PF00075
IPR002156
GO:0003676
GO:0004523
RVP
Retroviral aspartyl protease
PF00077
IPR018061
RVT_1
Reverse transcriptase (RNA-dependent DNA polymerase)
PF00078
IPR000477
GO:0003723
GO:0003964
GO:0006278
Gag_p17
gag gene protein p17 (matrix protein)
PF00540
IPR000071
GO:0005198
Gag_p24
gag gene protein p24 (core nucleocapsid protein)
PF00607
IPR000721
GO:0016032
dUTPase
dUTPase
PF00692
IPR008180
GO:0016787
GO:0046080
RVT_connect
Reverse transcriptase connection domain
PF06815
IPR010659
GO:0003964
GO:0006278
RVT_thumb
Reverse transcriptase thumb domain
PF06817
IPR010661
GO:0003964
GO:0006278
HLH
Helix-loop-helix DNA-binding domain
PF00010
IPR001092
GO:0030528
GO:0045449
zf-CCHC
Zinc knuckle
PF00098
IPR001878
GO:0003676
GO:0008270
TYA
TYA transposon protein
PF01021
IPR015820
GO:0003723
GO:0005737
LSM
LSM domain
PF01423
IPR001163
Transposase_8
Transposase
PF01527
IPR002514
GO:0003677
GO:0004803
GO:0006313
Transposase_12
Transposase
PF01610
IPR002560
GO:0003677
GO:0004803
GO:0006313
Spuma_A9PTase
Spumavirus aspartic protease (A9)
PF03539
IPR001641
GO:0004190
GO:0006508
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Copyright © 2007, Raghavachari et al.
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