Pfam ID
Description
Accession
Interpro ID
GO ID
CTP_transf_1
Cytidylyltransferase family
PF01148
IPR000374
GO:0016020
GO:0016772
CTP_transf_1
forms interactions with
Pfam ID
Description
Accession
Interpro ID
GO ID
Notes
Source
dsrm
Double-stranded RNA binding motif
PF00035
IPR001159
GO:0003725
GO:0005622
TIM
Triosephosphate isomerase
PF00121
IPR000652
GO:0004807
GO:0008152
Sigma70_r1_2
Sigma-70 factor, region 1.2
PF00140
IPR009042
GO:0003677
GO:0003700
GO:0006352
GO:0006355
GO:0016987
Ribosomal_S4
Ribosomal protein S4/S9 N-terminal domain
PF00163
IPR001912
GO:0005622
GO:0019843
Cpn10
Chaperonin 10 Kd subunit
PF00166
IPR020818
GO:0005737
GO:0006457
Ribosomal_L16
Ribosomal protein L16p/L10e
PF00252
IPR016180
GO:0003735
GO:0005840
GO:0006412
Bac_DnaA
Bacterial dnaA protein
PF00308
IPR013317
Ribosomal_S3_N
Ribosomal protein S3, N-terminal domain
PF00417
IPR008282
GO:0003735
GO:0005622
GO:0005840
GO:0006412
SSB
Single-strand binding protein family
PF00436
IPR000424
GO:0003697
Ribosomal_L20
Ribosomal protein L20
PF00453
IPR005813
GO:0003735
GO:0005622
GO:0005840
GO:0006412
GO:0019843
Ribosomal_L34
Ribosomal protein L34
PF00468
IPR000271
GO:0003735
GO:0005622
GO:0005840
GO:0006412
RF-1
RF-1 domain
PF00472
IPR000352
GO:0003747
GO:0006415
BRCT
BRCA1 C Terminus (BRCT) domain
PF00533
IPR001357
GO:0005622
Ribosomal_L12
Ribosomal protein L7/L12 C-terminal domain
PF00542
IPR013823
GO:0003735
GO:0005622
GO:0005840
GO:0006412
PP-binding
Phosphopantetheine attachment site
PF00550
IPR006163
GO:0048037
Ribonuclease_3
RNase3 domain
PF00636
IPR000999
GO:0003723
GO:0004525
GO:0006396
IF3_C
Translation initiation factor IF-3, C-terminal domain
PF00707
IPR019815
GO:0003743
GO:0006413
Ribosomal_L21p
Ribosomal prokaryotic L21 protein
PF00829
IPR001787
GO:0003723
GO:0003735
GO:0005622
GO:0005840
GO:0006412
Ribosomal_L28
Ribosomal L28 family
PF00830
IPR001383
GO:0003735
GO:0005622
GO:0005840
GO:0006412
PseudoU_synth_2
RNA pseudouridylate synthase
PF00849
IPR006145
GO:0001522
GO:0003723
GO:0009451
GO:0009982
Ribosomal_S16
Ribosomal protein S16
PF00886
IPR000307
GO:0003735
GO:0005622
GO:0005840
GO:0006412
EF_TS
Elongation factor TS
PF00889
IPR014039
GO:0003746
GO:0005622
GO:0006414
RNA_pol_A_bac
RNA polymerase Rpb3/RpoA insert domain
PF01000
IPR011262
GO:0003899
GO:0006350
GO:0046983
Ribosomal_L27
Ribosomal L27 protein
PF01016
IPR001684
GO:0003735
GO:0005622
GO:0005840
GO:0006412
Ribosomal_S18
Ribosomal protein S18
PF01084
IPR001648
GO:0003735
GO:0005622
GO:0005840
GO:0006412
CoaE
Dephospho-CoA kinase
PF01121
IPR001977
GO:0004140
GO:0005524
GO:0015937
EFP
Elongation factor P (EF-P) OB domain
PF01132
IPR001059
GO:0003746
GO:0006414
GIDA
Glucose inhibited division protein A
PF01134
IPR002218
GO:0008033
GO:0050660
Pept_tRNA_hydro
Peptidyl-tRNA hydrolase
PF01195
IPR001328
GO:0004045
GO:0006412
Ribosomal_L17
Ribosomal protein L17
PF01196
IPR000456
GO:0003735
GO:0005622
GO:0005840
GO:0006412
Ribosomal_L19
Ribosomal protein L19
PF01245
IPR001857
GO:0003735
GO:0005622
GO:0005840
GO:0006412
Ribosomal_L9_N
Ribosomal protein L9, N-terminal domain
PF01281
IPR020070
Ribosomal_L15
Ribosomal protein L15 amino terminal region
PF01305
Pep_deformylase
Polypeptide deformylase
PF01327
IPR000181
GO:0005506
GO:0006412
GO:0042586
5_3_exonuc
5'-3' exonuclease, C-terminal SAM fold
PF01367
IPR020047
GO:0003677
GO:0008409
Peptidase_M41
Peptidase family M41
PF01434
IPR000642
GO:0004222
GO:0005524
GO:0006508
Acyltransferase
Acyltransferase
PF01553
IPR002123
GO:0008152
GO:0008415
DUF21
Domain of unknown function DUF21
PF01595
IPR002550
Ribosomal_L35p
Ribosomal protein L35
PF01632
IPR021137
GO:0003735
GO:0005622
GO:0005840
GO:0006412
DNA_ligase_aden
NAD-dependent DNA ligase adenylation domain
PF01653
IPR013839
GO:0003911
DUF28
Domain of unknown function DUF28
PF01709
IPR002876
IPPT
IPP transferase
PF01715
IPR002627
GO:0004811
GO:0005524
GO:0008033
PolyA_pol
Poly A polymerase head domain
PF01743
IPR002646
GO:0003723
GO:0006396
GO:0016779
tRNA_m1G_MT
tRNA (Guanine-1)-methyltransferase
PF01746
IPR016009
RRF
Ribosome recycling factor
PF01765
IPR002661
GO:0006412
LGT
Prolipoprotein diacylglyceryl transferase
PF01790
IPR001640
GO:0009249
GO:0016020
GO:0016757
GO:0042158
Methyltransf_5
MraW methylase family
PF01795
IPR002903
GO:0008168
zf-CHC2
CHC2 zinc finger
PF01807
IPR002694
GO:0003677
GO:0003896
GO:0006260
GO:0008270
60KD_IMP
60Kd inner membrane protein
PF02096
IPR001708
GO:0016021
GO:0051205
Methyltransf_4
Putative methyltransferase
PF02390
IPR003358
GO:0006400
GO:0008176
5_3_exonuc_N
5'-3' exonuclease, N-terminal resolvase-like domain
PF02739
IPR020046
GO:0003677
GO:0008409
Formyl_trans_C
Formyl transferase, C-terminal domain
PF02911
IPR005793
GO:0009058
GO:0016742
tRNA_Me_trans
tRNA methyl transferase
PF03054
GO:0005737
GO:0008033
GO:0016740
DNA_ligase_OB
NAD-dependent DNA ligase OB-fold domain
PF03120
IPR004150
GO:0003911
GO:0006260
GO:0006281
PCRF
PCRF domain
PF03462
IPR005139
GO:0005737
GO:0006415
GO:0016149
DnaB_C
DnaB-like helicase C terminal domain
PF03796
IPR007694
GO:0003678
GO:0005524
GO:0006260
KRE9
Yeast cell wall synthesis protein KRE9/KNH1
PF05390
IPR008659
GO:0005576
GO:0042546
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Copyright © 2007, Raghavachari et al.
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