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| Pfam ID | Description | Accession | Interpro ID | GO ID | |
| VHS | VHS domain | PF00790 | IPR002014 |
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VHS
forms interactions with
| Pfam ID | Description | Accession | Interpro ID | GO ID | Notes | Source | ||||
| ubiquitin | Ubiquitin family | PF00240 | IPR000626 |
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| VHS | VHS domain | PF00790 | IPR002014 |
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| FYVE | FYVE zinc finger | PF01363 | IPR000306 |
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| Man-6-P_recep | Cation-dependent mannose-6-phosphate receptor | PF02157 |
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| Alpha_adaptinC2 | Adaptin C-terminal domain | PF02883 | IPR008152 |
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| SH3_1 | SH3 domain | PF00018 | IPR001452 |
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| Clathrin | Region in Clathrin and VPS | PF00637 |
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| UIM | Ubiquitin interaction motif | PF02809 | IPR003903 |
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| Iso_dh | Isocitrate/isopropylmalate dehydrogenase | PF00180 | IPR001804 |
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| Clathrin_propel | Clathrin propeller repeat | PF01394 | IPR022365 |
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| Paf1 | Paf1 | PF03985 | IPR007133 |
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| Bul1_C | Bul1 C terminus | PF04426 |
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