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| Pfam ID | Description | Accession | Interpro ID | GO ID |
| Paf1 | Paf1 | PF03985 | IPR007133 |
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Paf1
forms interactions with
| Pfam ID | Description | Accession | Interpro ID | GO ID | Notes | Source | |||
| Leo1 | Leo1-like protein | PF04004 | IPR007149 |
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| Pkinase | Protein kinase domain | PF00069 | IPR017442 |
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| Lactamase_B | Metallo-beta-lactamase superfamily | PF00753 |
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| VHS | VHS domain | PF00790 | IPR002014 |
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| Transferase | Transferase family | PF02458 | IPR003480 |
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| UIM | Ubiquitin interaction motif | PF02809 | IPR003903 |
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| YEATS | YEATS family | PF03366 | IPR005033 |
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| Supt5 | Supt5 repeat | PF03439 | IPR005100 |
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| RNA_pol_Rpb1_R | RNA polymerase Rpb1 C-terminal repeat | PF05001 | IPR000684 |
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| CDC73 | RNA pol II accessory factor, Cdc73 family | PF05179 | IPR007852 |
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