Pfam ID |
Description |
Accession |
Interpro ID |
GO ID |
Notes |
Source |
SecY |
eubacterial secY protein |
PF00344 |
IPR002208 |
|
|
|
SecA_SW |
SecA Wing and Scaffold domain |
PF07516 |
IPR011116 |
|
|
|
SecA_DEAD |
SecA DEAD-like domain |
PF07517 |
IPR011115 |
|
|
|
dsrm |
Double-stranded RNA binding motif |
PF00035 |
IPR001159 |
|
|
|
Sigma70_r1_2 |
Sigma-70 factor, region 1.2 |
PF00140 |
IPR009042 |
|
|
|
RecA |
recA bacterial DNA recombination protein |
PF00154 |
IPR013765 |
|
|
|
Cpn10 |
Chaperonin 10 Kd subunit |
PF00166 |
IPR020818 |
|
|
|
Bac_DNA_binding |
Bacterial DNA-binding protein |
PF00216 |
IPR000119 |
|
|
|
Helicase_C |
Helicase conserved C-terminal domain |
PF00271 |
IPR001650 |
|
|
|
Bac_DnaA |
Bacterial dnaA protein |
PF00308 |
IPR013317 |
|
|
|
Ribosomal_S3_N |
Ribosomal protein S3, N-terminal domain |
PF00417 |
IPR008282 |
|
|
|
SSB |
Single-strand binding protein family |
PF00436 |
IPR000424 |
|
|
|
Ribosomal_L20 |
Ribosomal protein L20 |
PF00453 |
IPR005813 |
|
|
|
DNA_pol_A |
DNA polymerase family A |
PF00476 |
IPR001098 |
|
|
|
BRCT |
BRCA1 C Terminus (BRCT) domain |
PF00533 |
IPR001357 |
|
|
|
PP-binding |
Phosphopantetheine attachment site |
PF00550 |
IPR006163 |
|
|
|
CLP_protease |
Clp protease |
PF00574 |
IPR001907 |
|
|
|
IF3_C |
Translation initiation factor IF-3, C-terminal domain |
PF00707 |
IPR019815 |
|
|
|
DNA_pol3_beta |
DNA polymerase III beta subunit, N-terminal domain |
PF00712 |
IPR022634 |
|
|
|
DnaB |
DnaB-like helicase N terminal domain |
PF00772 |
IPR007693 |
|
|
|
Ribosomal_L21p |
Ribosomal prokaryotic L21 protein |
PF00829 |
IPR001787 |
|
|
|
EF_TS |
Elongation factor TS |
PF00889 |
IPR014039 |
|
|
|
Transpeptidase |
Penicillin binding protein transpeptidase domain |
PF00905 |
IPR001460 |
|
|
|
Transgly |
Transglycosylase |
PF00912 |
IPR001264 |
|
|
|
RNA_pol_A_bac |
RNA polymerase Rpb3/RpoA insert domain |
PF01000 |
IPR011262 |
|
|
|
NusB |
NusB family |
PF01029 |
IPR006027 |
|
|
|
SecA_PP_bind |
SecA preprotein cross-linking domain |
PF01043 |
IPR011130 |
|
|
|
FTSW_RODA_SPOVE |
Cell cycle protein |
PF01098 |
IPR001182 |
|
|
|
EFP |
Elongation factor P (EF-P) OB domain |
PF01132 |
IPR001059 |
|
|
|
Dus |
Dihydrouridine synthase (Dus) |
PF01207 |
IPR001269 |
|
|
|
Mur_ligase |
Mur ligase family, catalytic domain |
PF01225 |
IPR000713 |
|
|
|
Ribosomal_L19 |
Ribosomal protein L19 |
PF01245 |
IPR001857 |
|
|
|
Ribosomal_S6 |
Ribosomal protein S6 |
PF01250 |
IPR000529 |
|
|
|
Peptidase_A8 |
Signal peptidase (SPase) II |
PF01252 |
IPR001872 |
|
|
|
Ribosomal_L9_N |
Ribosomal protein L9, N-terminal domain |
PF01281 |
IPR020070 |
|
|
|
Pep_deformylase |
Polypeptide deformylase |
PF01327 |
IPR000181 |
|
|
|
5_3_exonuc |
5'-3' exonuclease, C-terminal SAM fold |
PF01367 |
IPR020047 |
|
|
|
LysM |
LysM domain |
PF01476 |
IPR018392 |
|
|
|
Ribosomal_L35p |
Ribosomal protein L35 |
PF01632 |
IPR021137 |
|
|
|
Ribosomal_S20p |
Ribosomal protein S20 |
PF01649 |
IPR002583 |
|
|
|
DNA_ligase_aden |
NAD-dependent DNA ligase adenylation domain |
PF01653 |
IPR013839 |
|
|
|
SmpB |
SmpB protein |
PF01668 |
IPR000037 |
|
|
|
IPPT |
IPP transferase |
PF01715 |
IPR002627 |
|
|
|
PolyA_pol |
Poly A polymerase head domain |
PF01743 |
IPR002646 |
|
|
|
tRNA_m1G_MT |
tRNA (Guanine-1)-methyltransferase |
PF01746 |
IPR016009 |
|
|
|
RimM |
RimM N-terminal domain |
PF01782 |
IPR002676 |
|
|
|
LGT |
Prolipoprotein diacylglyceryl transferase |
PF01790 |
IPR001640 |
|
|
|
Methyltransf_5 |
MraW methylase family |
PF01795 |
IPR002903 |
|
|
|
zf-CHC2 |
CHC2 zinc finger |
PF01807 |
IPR002694 |
|
|
|
Dala_Dala_lig_N |
D-ala D-ala ligase N-terminus |
PF01820 |
IPR011127 |
|
|
|
RBFA |
Ribosome-binding factor A |
PF02033 |
IPR000238 |
|
|
|
NusG |
Transcription termination factor nusG |
PF02357 |
IPR006645 |
|
|
|
UPF0079 |
Uncharacterised P-loop hydrolase UPF0079 |
PF02367 |
IPR003442 |
|
|
|
DUF143 |
Domain of unknown function DUF143 |
PF02410 |
IPR004394 |
|
|
|
DUF150 |
Uncharacterised BCR, YhbC family COG0779 |
PF02576 |
IPR003728 |
|
|
|
5_3_exonuc_N |
5'-3' exonuclease, N-terminal resolvase-like domain |
PF02739 |
IPR020046 |
|
|
|
DNA_pol3_beta_2 |
DNA polymerase III beta subunit, central domain |
PF02767 |
IPR022637 |
|
|
|
DNA_pol3_beta_3 |
DNA polymerase III beta subunit, C-terminal domain |
PF02768 |
IPR022635 |
|
|
|
MurB_C |
UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain |
PF02873 |
IPR011601 |
|
|
|
Formyl_trans_C |
Formyl transferase, C-terminal domain |
PF02911 |
IPR005793 |
|
|
|
Phe_tRNA-synt_N |
Aminoacyl tRNA synthetase class II, N-terminal domain |
PF02912 |
IPR004188 |
|
|
|
Glyco_transf_28 |
Glycosyltransferase family 28 N-terminal domain |
PF03033 |
IPR004276 |
|
|
|
RNA_pol_A_CTD |
Bacterial RNA polymerase, alpha chain C terminal domain |
PF03118 |
IPR011260 |
|
|
|
DNA_ligase_OB |
NAD-dependent DNA ligase OB-fold domain |
PF03120 |
IPR004150 |
|
|
|
TRCF |
TRCF domain |
PF03461 |
IPR005118 |
|
|
|
CorC_HlyC |
Transporter associated domain |
PF03471 |
IPR005170 |
|
|
|
Cons_hypoth95 |
Conserved hypothetical protein 95 |
PF03602 |
IPR004398 |
|
|
|
PBP_dimer |
Penicillin-binding Protein dimerisation domain |
PF03717 |
IPR005311 |
|
|
|
Competence |
Competence protein |
PF03772 |
IPR004477 |
|
|
|
DnaB_C |
DnaB-like helicase C terminal domain |
PF03796 |
IPR007694 |
|
|
|
SecG |
Preprotein translocase SecG subunit |
PF03840 |
IPR004692 |
|
|
|