Pfam ID
Description
Accession
Interpro ID
GO ID
Dus
Dihydrouridine synthase (Dus)
PF01207
IPR001269
GO:0008033
GO:0017150
GO:0050660
GO:0055114
Dus
forms interactions with
Pfam ID
Description
Accession
Interpro ID
GO ID
Notes
Source
Pkinase
Protein kinase domain
PF00069
IPR017442
GO:0004672
GO:0005524
GO:0006468
IPPT
IPP transferase
PF01715
IPR002627
GO:0004811
GO:0005524
GO:0008033
MurB_C
UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain
PF02873
IPR011601
GO:0008762
GO:0009252
GO:0055114
FDX-ACB
Ferredoxin-fold anticodon binding domain
PF03147
IPR005121
GO:0000049
GO:0000287
GO:0004826
GO:0005524
GO:0006432
GO:0008033
Actin
Actin
PF00022
IPR004000
GO:0005515
dsrm
Double-stranded RNA binding motif
PF00035
IPR001159
GO:0003725
GO:0005622
ketoacyl-synt
Beta-ketoacyl synthase, N-terminal domain
PF00109
IPR014030
RecA
recA bacterial DNA recombination protein
PF00154
IPR013765
GO:0003697
GO:0005524
GO:0006281
Ribosomal_S4
Ribosomal protein S4/S9 N-terminal domain
PF00163
IPR001912
GO:0005622
GO:0019843
Cpn10
Chaperonin 10 Kd subunit
PF00166
IPR020818
GO:0005737
GO:0006457
Ribosomal_L16
Ribosomal protein L16p/L10e
PF00252
IPR016180
GO:0003735
GO:0005840
GO:0006412
SSB
Single-strand binding protein family
PF00436
IPR000424
GO:0003697
RF-1
RF-1 domain
PF00472
IPR000352
GO:0003747
GO:0006415
DNA_pol_A
DNA polymerase family A
PF00476
IPR001098
GO:0003677
GO:0003887
GO:0006260
MutS_V
MutS domain V
PF00488
IPR000432
GO:0005524
GO:0006298
GO:0030983
BRCT
BRCA1 C Terminus (BRCT) domain
PF00533
IPR001357
GO:0005622
Ribosomal_L12
Ribosomal protein L7/L12 C-terminal domain
PF00542
IPR013823
GO:0003735
GO:0005622
GO:0005840
GO:0006412
PP-binding
Phosphopantetheine attachment site
PF00550
IPR006163
GO:0048037
CLP_protease
Clp protease
PF00574
IPR001907
GO:0004252
GO:0006508
zf-CCCH
Zinc finger C-x8-C-x5-C-x3-H type (and similar)
PF00642
IPR000571
GO:0003676
GO:0008270
Acyl_transf_1
Acyl transferase domain
PF00698
IPR014043
DNA_pol3_beta
DNA polymerase III beta subunit, N-terminal domain
PF00712
IPR022634
GO:0003677
GO:0003887
GO:0006260
GO:0008408
GO:0009360
DnaB
DnaB-like helicase N terminal domain
PF00772
IPR007693
GO:0003678
GO:0005524
GO:0006260
PseudoU_synth_2
RNA pseudouridylate synthase
PF00849
IPR006145
GO:0001522
GO:0003723
GO:0009451
GO:0009982
Transpeptidase
Penicillin binding protein transpeptidase domain
PF00905
IPR001460
GO:0008658
GO:0009273
RNA_pol_A_bac
RNA polymerase Rpb3/RpoA insert domain
PF01000
IPR011262
GO:0003899
GO:0006350
GO:0046983
Ribosomal_L27
Ribosomal L27 protein
PF01016
IPR001684
GO:0003735
GO:0005622
GO:0005840
GO:0006412
FTSW_RODA_SPOVE
Cell cycle protein
PF01098
IPR001182
GO:0007049
GO:0016021
CoaE
Dephospho-CoA kinase
PF01121
IPR001977
GO:0004140
GO:0005524
GO:0015937
Pept_tRNA_hydro
Peptidyl-tRNA hydrolase
PF01195
IPR001328
GO:0004045
GO:0006412
Ribosomal_L15
Ribosomal protein L15 amino terminal region
PF01305
LysM
LysM domain
PF01476
IPR018392
GO:0016998
PolyA_pol
Poly A polymerase head domain
PF01743
IPR002646
GO:0003723
GO:0006396
GO:0016779
RRF
Ribosome recycling factor
PF01765
IPR002661
GO:0006412
Dala_Dala_lig_N
D-ala D-ala ligase N-terminus
PF01820
IPR011127
GO:0005618
GO:0008716
GO:0009252
60KD_IMP
60Kd inner membrane protein
PF02096
IPR001708
GO:0016021
GO:0051205
NusG
Transcription termination factor nusG
PF02357
IPR006645
GO:0003711
GO:0032968
UPF0079
Uncharacterised P-loop hydrolase UPF0079
PF02367
IPR003442
DUF143
Domain of unknown function DUF143
PF02410
IPR004394
DUF150
Uncharacterised BCR, YhbC family COG0779
PF02576
IPR003728
DNA_pol3_beta_2
DNA polymerase III beta subunit, central domain
PF02767
IPR022637
GO:0003677
GO:0003887
GO:0006260
GO:0008408
GO:0009360
Ketoacyl-synt_C
Beta-ketoacyl synthase, C-terminal domain
PF02801
IPR014031
Clp_N
Clp amino terminal domain
PF02861
IPR004176
GO:0005515
GO:0019538
Glyco_transf_28
Glycosyltransferase family 28 N-terminal domain
PF03033
IPR004276
GO:0005975
GO:0016758
GO:0030259
TRCF
TRCF domain
PF03461
IPR005118
GO:0003684
GO:0004386
GO:0005524
GO:0006281
PCRF
PCRF domain
PF03462
IPR005139
GO:0005737
GO:0006415
GO:0016149
CorC_HlyC
Transporter associated domain
PF03471
IPR005170
Cons_hypoth95
Conserved hypothetical protein 95
PF03602
IPR004398
GO:0008168
GO:0031167
PBP_dimer
Penicillin-binding Protein dimerisation domain
PF03717
IPR005311
GO:0008658
Competence
Competence protein
PF03772
IPR004477
SecG
Preprotein translocase SecG subunit
PF03840
IPR004692
GO:0009306
GO:0015450
GO:0016021
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Copyright © 2007, Raghavachari et al.
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