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| Pfam ID | Description | Accession | Interpro ID | GO ID | |
| UFD1 | Ubiquitin fusion degradation protein UFD1 | PF03152 | IPR004854 |
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UFD1
forms interactions with
| Pfam ID | Description | Accession | Interpro ID | GO ID | Notes | Source | |||
| CDC48_N | Cell division protein 48 (CDC48), N-terminal domain | PF02359 | IPR003338 |
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| V-ATPase_G | Vacuolar (H+)-ATPase G subunit | PF03179 | IPR005124 |
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| PAP_central | Poly(A) polymerase central domain | PF04928 | IPR007012 |
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| zf-NPL4 | NPL4 family, putative zinc binding region | PF05020 | IPR007716 |
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| NPL4 | NPL4 family | PF05021 | IPR007717 |
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| NTP_transf_2 | Nucleotidyltransferase domain | PF01909 | IPR002934 |
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| UPF0061 | Uncharacterized ACR, YdiU/UPF0061 family | PF02696 | IPR003846 |
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| NDT80_PhoG | NDT80 / PhoG like DNA-binding family | PF05224 | IPR007888 |
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| AAA_2 | ATPase family associated with various cellular activities (AAA) | PF07724 | IPR013093 |
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