Pfam ID
Description
Accession
Interpro ID
GO ID
tRNA_anti
OB-fold nucleic acid binding domain
PF01336
IPR004365
GO:0003676
tRNA_anti
forms interactions with
Pfam ID
Description
Accession
Interpro ID
GO ID
Notes
Source
tRNA-synt_2
tRNA synthetases class II (D, K and N)
PF00152
IPR004364
GO:0000166
GO:0004812
GO:0005524
GO:0005737
GO:0006412
GO:0006418
tRNA_anti
OB-fold nucleic acid binding domain
PF01336
IPR004365
GO:0003676
DNA_pol3_alpha
Bacterial DNA polymerase III alpha subunit
PF07733
IPR011708
GO:0005737
GO:0006260
GO:0008408
Rep_fac-A_C
Replication factor-A C terminal domain
PF08646
IPR013955
Rep_fac-A_3
Replication factor A protein 3
PF08661
IPR013970
DEAD
DEAD/DEAH box helicase
PF00270
IPR011545
GO:0003676
GO:0005524
GO:0008026
Helicase_C
Helicase conserved C-terminal domain
PF00271
IPR001650
GO:0003676
GO:0004386
GO:0005524
PHP
PHP domain
PF02811
IPR004013
GO:0003824
GAD
GAD domain
PF02938
IPR004115
GO:0004812
GO:0005524
GO:0005737
GO:0006412
FKBP_C
FKBP-type peptidyl-prolyl cis-trans isomerase
PF00254
IPR001179
GO:0006457
MutS_V
MutS domain V
PF00488
IPR000432
GO:0005524
GO:0006298
GO:0030983
HHH
Helix-hairpin-helix motif
PF00633
IPR000445
GO:0003677
XPA_N
XPA protein N-terminal
PF01286
MutS_I
MutS domain I
PF01624
IPR007695
GO:0005524
GO:0006298
GO:0030983
FAT
FAT domain
PF02259
IPR003151
FATC
FATC domain
PF02260
IPR003152
Rad52_Rad22
Rad52/22 family double-strand break repair protein
PF04098
IPR007232
GO:0006281
GO:0006310
Menin
Menin
PF05053
IPR007747
GO:0005634
AAA
ATPase family associated with various cellular activities (AAA)
PF00004
IPR003959
GO:0005524
Actin
Actin
PF00022
IPR004000
GO:0005515
RRM_1
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
PF00076
IPR000504
GO:0003676
Histone
Core histone H2A/H2B/H3/H4
PF00125
IPR007125
GO:0003677
Metallophos
Calcineurin-like phosphoesterase
PF00149
IPR004843
GO:0016787
Zn_clus
Fungal Zn(2)-Cys(6) binuclear cluster domain
PF00172
IPR001138
GO:0003700
GO:0005634
GO:0006355
GO:0008270
Aconitase
Aconitase family (aconitate hydratase)
PF00330
IPR001030
GO:0008152
WD40
WD domain, G-beta repeat
PF00400
IPR019781
PI3_PI4_kinase
Phosphatidylinositol 3- and 4-kinase
PF00454
IPR000403
GO:0016773
HMG_box
HMG (high mobility group) box
PF00505
IPR000910
GO:0003677
GO:0005634
TPR_1
Tetratricopeptide repeat
PF00515
IPR001440
SNase
Staphylococcal nuclease homologue
PF00565
IPR006021
GO:0003676
GO:0016788
AhpC-TSA
AhpC/TSA family
PF00578
IPR000866
GO:0016209
GO:0016491
Aconitase_C
Aconitase C-terminal domain
PF00694
IPR000573
GO:0008152
Septin
Septin
PF00735
IPR000038
GO:0005525
GO:0007049
Gram_pos_anchor
Gram positive anchor
PF00746
IPR019948
Exonuc_X-T
Exonuclease
PF00929
IPR013520
SUI1
Translation initiation factor SUI1
PF01253
IPR001950
GO:0003743
GO:0006413
LSM
LSM domain
PF01423
IPR001163
Glyco_hydro_47
Glycosyl hydrolase family 47
PF01532
IPR001382
GO:0004571
GO:0005509
GO:0016020
HAT
HAT (Half-A-TPR) repeat
PF02184
IPR003107
GO:0005622
GO:0006396
CDC48_N
Cell division protein 48 (CDC48), N-terminal domain
PF02359
IPR003338
GO:0005524
Exonuc_VII_L
Exonuclease VII, large subunit
PF02601
IPR020579
5_nucleotid_C
5'-nucleotidase, C-terminal domain
PF02872
IPR008334
GO:0009166
GO:0016787
DUF471
Family of unknown function (DUF471)
PF04330
DUF472
Family of unknown function (DUF472)
PF04331
P16-Arc
ARP2/3 complex 16 kDa subunit (p16-Arc)
PF04699
IPR006789
GO:0005856
GO:0030833
XPA_C
XPA protein C-terminus
PF05181
MutS_II
MutS domain II
PF05188
IPR007860
GO:0005524
GO:0006298
GO:0030983
MutS_IV
MutS family domain IV
PF05190
IPR007861
GO:0005524
GO:0006298
GO:0030983
MutS_III
MutS domain III
PF05192
IPR007696
GO:0005524
GO:0006298
GO:0030983
PRP1_N
PRP1 splicing factor, N-terminal
PF06424
IPR010491
GO:0000398
GO:0005634
AAA_2
ATPase family associated with various cellular activities (AAA)
PF07724
IPR013093
GO:0005524
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Copyright © 2007, Raghavachari et al.
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