• User’s Guide

---

• Candidate Gene SNP Selection (GenePipe)
  SNP selection for candidate genes based on Genome Wide Association Study (GWAS) results,
  functional SNP prediction and Linkage Disequilibrium (LD) information.

• GWAS Functional SNP Selection (GenomePipe)
  Functional SNP selection from SNPs that are in high LD with GWAS SNPs

• GWAS SNP Selection in Linkage Loci (LinkagePipe)
  GWAS SNP selection in candidate genomic regions (such as linkage loci)

• LD TAG SNP Selection (TagSNP)
  LD tag SNP selection and visualization for single or multiple populations.
  Finalization of SNP list from various queries.

• SNP Function Prediction (FuncPred)
  Querying SNP function predictions and ethnic-specific allele frequencies.

• SNP Information in DNA Sequence (SNPseq)
  Visualization of SNP related information in the context of DNA sequence.
  Preparing DNA Sequence for PCR Primer Design considering SNP information.
  Detailed infomation of CpG region.

References
Zongli Xu, Jack A. Taylor (2009). SNPinfo: Integrating GWAS and Candidate Gene Information into Functional SNP Selection for Genetic Association Studies. Nucleic Acids Research